Immunhistochemie HER2: Observation


Inhalt

Dieses Profil beschreibt den humanen epidermalen Wachstumsfaktorrezeptor 2 (HER2) im IHC-Bericht.


Verknüpfungen zu anderen Ressourcen


Zeitliche Zuordnung im Verlauf

NameStatusVersionCanonicalBasis
MII_PR_MTB_IMMUNOHISTOCHEMISTRY_HER2draft2024.0.0-ballothttps://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry-her2https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry

Inhalt

idΣ0..1id
id0..1string
extensionC0..*Extension
versionIdΣ0..1id
lastUpdatedΣ0..1instant
sourceΣ0..1uri
profileS Σ0..*canonical(StructureDefinition)
securityΣ0..*CodingBinding
tagΣ0..*Coding
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionC0..*Extension
modifierExtension?! C0..*Extension
identifierS Σ0..*Identifier
basedOnΣ0..*Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest)
partOfΣ0..*Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
id0..1string
extensionC0..*Extension
codingΣ1..1CodingPattern
textΣ0..1string
id0..1string
extensionC0..*Extension
codingΣ1..1CodingPattern
textΣ0..1string
id0..1string
extensionC0..*Extension
codingΣ1..1CodingPattern
textΣ0..1string
id0..1string
extensionC0..*Extension
id0..1string
extensionC0..*Extension
systemS Σ1..1uri
versionΣ0..1string
codeΣ0..1code
displayΣ0..1string
userSelectedΣ0..1boolean
generischS Σ0..1CodingPattern
textΣ0..1string
subjectΣ0..1Reference(Patient | Group | Device | Location)
focusS Σ0..*Reference(MII_PR_Onko_Diagnose_Primaertumor | MII_PR_MTB_Diagnose_Primaertumor)
encounterΣ0..1Reference(Encounter)
effectiveDateTimedateTime
effectivePeriodPeriod
effectiveTimingTiming
effectiveInstantinstant
issuedΣ0..1instant
performerΣ0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueQuantityQuantity
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
id0..1string
extensionC0..*Extension
id0..1string
extensionC0..*Extension
systemΣ0..1uriPattern
versionΣ0..1string
codeΣ0..1codeBinding
displayΣ0..1string
userSelectedΣ0..1boolean
textΣ0..1string
dataAbsentReasonC0..1CodeableConceptBinding
interpretationS0..*CodeableConceptBinding
note0..*Annotation
bodySite0..1CodeableConcept
method0..1CodeableConcept
specimenS0..1Reference(Specimen)
device0..1Reference(Device | DeviceMetric)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
lowC0..1SimpleQuantity
highC0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
age0..1Range
text0..1string
hasMemberΣ0..*Reference(Observation | QuestionnaireResponse | MolecularSequence)
variantΣ0..*Reference(Variant)
genotypeΣ0..*Reference(Genotype)
haplotypeΣ0..*Reference(Haplotype)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConcept
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueCodeableConceptCodeableConcept
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
id0..1string
extensionC0..*Extension
codingΣ0..*CodingPattern
textΣ0..1string
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)

Immunhistrchemistry report

<StructureDefinition xmlns="http://hl7.org/fhir">
<id value="mii-pr-mtb-immunohistochemistry-her2" />
<url value="https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry-her2" />
<version value="2024.0.0-ballot" />
<name value="MII_PR_MTB_IMMUNOHISTOCHEMISTRY_HER2" />
<title value="MII PR MTB Immunohistochemistry" />
<status value="draft" />
<publisher value="Medizininformatik Initiative" />
<system value="url" />
<value value="https://www.medizininformatik-initiative.de" />
</telecom>
</contact>
<description value="Immunhistrchemistry report" />
<fhirVersion value="4.0.1" />
<kind value="resource" />
<abstract value="false" />
<type value="Observation" />
<baseDefinition value="https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry" />
<derivation value="constraint" />
<element id="Observation.code.coding">
<path value="Observation.code.coding" />
<system value="http://loinc.org" />
<code value="18474-7" />
<display value="HER2 Ag [Presence] in Tissue by Immune stain" />
</patternCoding>
</element>
<element id="Observation.value[x]:valueCodeableConcept">
<path value="Observation.value[x]" />
<sliceName value="valueCodeableConcept" />
<code value="CodeableConcept" />
</type>
</element>
<element id="Observation.value[x]:valueCodeableConcept.coding">
<path value="Observation.value[x].coding" />
<short value="0|1+|2+|3+|Indeterminate" />
</element>
<element id="Observation.value[x]:valueCodeableConcept.coding.system">
<path value="Observation.value[x].coding.system" />
<patternUri value="http://loinc.org" />
</element>
<element id="Observation.value[x]:valueCodeableConcept.coding.code">
<path value="Observation.value[x].coding.code" />
<strength value="required" />
<valueSet value="http://loinc.org/vs/LL4396-9" />
</binding>
</element>
<element id="Observation.component:gene-studied">
<path value="Observation.component" />
<sliceName value="gene-studied" />
</element>
<element id="Observation.component:gene-studied.value[x]">
<path value="Observation.component.value[x]" />
<system value="http://www.genenames.org/geneId" />
<code value="HGNC:2064" />
<display value="ERBB2" />
</coding>
</patternCodeableConcept>
</element>
<element id="Observation.component:biomarker-category">
<path value="Observation.component" />
<sliceName value="biomarker-category" />
</element>
<element id="Observation.component:biomarker-category.value[x].coding">
<path value="Observation.component.value[x].coding" />
<code value="immuneStain" />
</patternCoding>
</element>
</differential>
</StructureDefinition>
{
"resourceType": "StructureDefinition",
"id": "mii-pr-mtb-immunohistochemistry-her2",
"url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry-her2",
"version": "2024.0.0-ballot",
"name": "MII_PR_MTB_IMMUNOHISTOCHEMISTRY_HER2",
"title": "MII PR MTB Immunohistochemistry",
"status": "draft",
"publisher": "Medizininformatik Initiative",
"contact": [
{
"telecom": [
{
"system": "url",
"value": "https://www.medizininformatik-initiative.de"
}
]
}
],
"description": "Immunhistrchemistry report",
"fhirVersion": "4.0.1",
"kind": "resource",
"abstract": false,
"type": "Observation",
"baseDefinition": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-immunohistochemistry",
"derivation": "constraint",
"element": [
{
"id": "Observation.code.coding",
"path": "Observation.code.coding",
"code": "18474-7",
"system": "http://loinc.org",
"display": "HER2 Ag [Presence] in Tissue by Immune stain"
}
},
{
"id": "Observation.value[x]:valueCodeableConcept",
"path": "Observation.value[x]",
"sliceName": "valueCodeableConcept",
"type": [
{
"code": "CodeableConcept"
}
]
},
{
"id": "Observation.value[x]:valueCodeableConcept.coding",
"path": "Observation.value[x].coding",
"short": "0|1+|2+|3+|Indeterminate"
},
{
"id": "Observation.value[x]:valueCodeableConcept.coding.system",
"path": "Observation.value[x].coding.system",
"patternUri": "http://loinc.org"
},
{
"id": "Observation.value[x]:valueCodeableConcept.coding.code",
"path": "Observation.value[x].coding.code",
"binding": {
"strength": "required",
"valueSet": "http://loinc.org/vs/LL4396-9"
}
},
{
"id": "Observation.component:gene-studied",
"path": "Observation.component",
"sliceName": "gene-studied"
},
{
"id": "Observation.component:gene-studied.value[x]",
"path": "Observation.component.value[x]",
"coding": [
{
"code": "HGNC:2064",
"system": "http://www.genenames.org/geneId",
"display": "ERBB2"
}
]
}
},
{
"id": "Observation.component:biomarker-category",
"path": "Observation.component",
"sliceName": "biomarker-category"
},
{
"id": "Observation.component:biomarker-category.value[x].coding",
"path": "Observation.component.value[x].coding",
"code": "immuneStain"
}
}
]
}
}

Mapping Datensatz zu FHIR

DatensatzErklaerungFHIR
RNA Fusion

RNA Fusion

MII_PR_MTB_RNA_Seq
Varianten ID

Varianten ID

MII_PR_MTB_RNA_Seq.component[variation-code]
Entrez ID

Entrez ID

MII_PR_MTB_RNA_Seq.component[variation-code]
Ensemble ID

Ensemble ID

MII_PR_MTB_RNA_Seq.component[variation-code]
Gen

Gen

MII_PR_MTB_RNA_Seq.component[gene-studied]
Transcript ID

Transcript ID

MII_PR_MTB_RNA_Seq.component[transcript-id]
Transcripts Per Million

Transcripts Per Million

MII_PR_MTB_RNA_Seq.component[transcripts-per-million]
Tissue Corrected Expression

Tissue Corrected Expression

MII_PR_MTB_RNA_Seq.component[tissue-corrected-expression]
Raw counts

Raw counts

MII_PR_MTB_RNA_Seq.component[raw-counts]
Library size

Library size

MII_PR_MTB_RNA_Seq.component[library-size]
Cohort ranking

Cohort ranking

MII_PR_MTB_RNA_Seq.component[cohort-ranking]

Suchparameter

Folgende Suchparameter sind für das Modul Onkologie relevant, auch in Kombination:

  1. Der Suchparameter "_id" MUSS unterstützt werden:

    Beispiele:

    GET [base]/Observation?_id=12345

    Anwendungshinweise: Weitere Informationen zur Suche nach "_id" finden sich in der FHIR-Basisspezifikation - Abschnitt "Parameters for all resources".

  2. Der Suchparameter "code" MUSS unterstützt werden:

    Beispiele:

    GET [base]/Observation?code=http://snomed.info/sct|1234806008

    Anwendungshinweise: Weitere Informationen zur Suche nach "code" finden sich in der FHIR-Basisspezifikation - Abschnitt "token".

  3. Der Suchparameter "focus" MUSS unterstützt werden:

    Beispiele:

    GET [base]/Observation?focus=Condition/example-mii-mtb-diagnose

    Anwendungshinweise: Weitere Informationen zur Suche nach "focus" finden sich in der FHIR-Basisspezifikation - Abschnitt "reference".

  4. Der Suchparameter "interpretation" MUSS unterstützt werden:

    Beispiele:

    GET [base]/Observation?interpretation=http://hl7.org/fhir/uv/genomics-reporting/ValueSet/high-low-codes-vs|high

    Anwendungshinweise: Weitere Informationen zur Suche nach "interpretation" finden sich in der FHIR-Basisspezifikation - Abschnitt "token".

  5. Der Suchparameter "specimen" MUSS unterstützt werden:

    Beispiele:

    GET [base]/Observation?specimen=Specimen/1234

    Anwendungshinweise: Weitere Informationen zur Suche nach "specimen" finden sich in der FHIR-Basisspezifikation - Abschnitt "reference".


Beispiele