ObservationMicrobiologyResistance

Introduction

The ObservationMicrobiologyResistance profile represents the resistance results done for a microbiology sample and is a profile created from the resource Observation. Since there can be many resistance results for a result of a microbiology sample this separate observation profile is used to record that information.The data available from COSMIC to this profile is only starting from R8.3.03 COSMIC release, information created before this release cannot be taken from this API.

Intended Use

The profile ObservationMicrobiologyResistance is used for communicating resistance test results done for a microbiology sample value in the element observation.value. The API can be used to read resistance results sent from a laboratory to COSMIC. This observation profile is linked to the ObservationMicrobiology profile using the hasMember field in the profile.

Profile Overview

ObservationMicrobiologyResistance

idΣ1..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionI0..*Extension
modifierExtension?! I0..*Extension
identifierΣ0..*Identifier
basedOnΣ I0..*Reference(ServiceRequest)
partOfΣ I0..0Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
id0..1string
extensionI0..*Extension
id0..1string
extensionI0..*Extension
systemΣ0..1uri
versionΣ0..1string
codeΣ0..1codeFixed Value
displayΣ0..1string
userSelectedΣ0..1boolean
textΣ0..1string
codeΣ1..1CodeableConcept
subjectΣ I0..1Reference(Patient)
focusΣ I0..0Reference(Resource)
encounterΣ I0..0Reference(Encounter)
issuedΣ0..0instant
performerΣ I0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonI0..0CodeableConceptBinding
interpretation0..0CodeableConceptBinding
note0..*Annotation
bodySite0..1CodeableConcept
method0..0CodeableConcept
specimenI0..1Reference(Specimen)
deviceI0..0Reference(Device | DeviceMetric)
id0..1string
extensionI0..*Extension
modifierExtensionΣ ?! I0..*Extension
lowI0..1SimpleQuantity
highI0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
ageI0..1Range
text0..1string
hasMemberΣ I0..*Reference(Observation)
derivedFromΣ I0..0Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence)

Statuses

FHIR status Status in COSMIC
Preliminary draft
Final Final
Any other status Unknown
COS version Profile version Required COSMIC version Date Description
3.0.0 1.0.0 R8.3.05 May 2022 initial version

ValueSet

The profile includes bindings to the following FHIR defined value set:

ValueSet