ObservationMicrobiology

Introduction

The ObservationMicrobiology profile represents the result information of a microbiology request and is a profile created from the resource Observation. The Resistance results will not be shown using this Observation profile, only the results of other microbiology examinations done on the sample of the patient. The data available from COSMIC to this profile is only starting from R8.3.03 COSMIC release, information created before this release cannot be taken from this API.

Intended Use

The profile ObservationMicrobiology is used for communicating an entry of a result of a microbiology test done by sending a value in the element observation.value. This profile is referenced in the basedOn field of DiagnosticReport FHIR profile. The API can be used to read result information for a specific microbiology test done as a part of a microbiology.

Organization profile used for performer supports requesting PDL hierarchy details as well, it will have the full hierarchy of units related to performer.

Profile Overview

ObservationMicrobiology

idΣ1..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionI0..*Extension
modifierExtension?! I0..*Extension
identifierΣ0..*Identifier
basedOnΣ I0..*Reference(ServiceRequest)
partOfΣ I0..0Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
category1..1CodeableConceptBinding
codeΣ1..1CodeableConcept
subjectΣ I0..1Reference(Patient)
focusΣ I0..0Reference(Resource)
encounterΣ I0..1Reference(Encounter)
issuedΣ0..1instant
performerΣ I0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonI0..0CodeableConceptBinding
interpretation0..*CodeableConceptBinding
note0..*Annotation
bodySite0..1CodeableConcept
method0..0CodeableConcept
specimenI0..1Reference(Specimen)
deviceI0..0Reference(Device | DeviceMetric)
id0..1string
extensionI0..*Extension
modifierExtensionΣ ?! I0..*Extension
lowI0..1SimpleQuantity
highI0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
ageI0..1Range
text0..1string
hasMemberΣ I0..*Reference(Observation)
derivedFromΣ I0..0Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence)

COS version Profile version Required COSMIC version Date Description
3.0.0 1.0.0 R8.3.05 May 2022 initial version

Statuses

FHIR status Status in COSMIC
Preliminary Preliminary
Amended Additional
Final Final
Any other status Unknown

ValueSet

The profile includes bindings to the following FHIR defined value set:

ValueSet