CodeSystems

The CodeSystems created specifically for use in Genomics are listed below. Some of the CodeSystems listed may still be in draft and pending further changes once requirements for the GMS have been finalised.

Codes for requestable entities (Test Directory codes) are dependent upon the digitisation of the test directory. This is treated as a separate project.

By default, the central Genomic Order Management Broker will validate all CodeSystems included within the Genomics IG. It will also validate core HL7 CodeSystems, SNOMED CT codes and HPO codes (with the system http://human-phenotype-ontology.org) against the UK OntoServer. All other codes, from unknown CodeSystem, will not be validated against.

CodeSystem Additional Information Type Genomics

Usage

CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics defines the following codes:

CodeDisplayDefinition
ConsentConsentConsent for treatment record
ConsignmentNumberConsignment NumberThe specimen consignment number
DiagnosticReportDiagnosticReportThe DiagnosticReport generated upon the task completion
RackIdRack NumberThe specimen rack number
SpecimenSpecimenThe specimen provided for the task execution
WellIdWell Identification NumberThe specimen well identification number

Table View

CodeSystem.id[0]additional-infotype-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics
CodeSystem.version[0]0.1.0
CodeSystem.name[0]AdditionalInfoTypeGenomics
CodeSystem.title[0]Additional Information Type Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-05-31T00:00:00.000Z
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.description[0]CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]Consent
CodeSystem.concept[0].display[0]Consent
CodeSystem.concept[0].definition[0]Consent for treatment record
CodeSystem.concept[1].code[0]ConsignmentNumber
CodeSystem.concept[1].display[0]Consignment Number
CodeSystem.concept[1].definition[0]The specimen consignment number
CodeSystem.concept[2].code[0]DiagnosticReport
CodeSystem.concept[2].display[0]DiagnosticReport
CodeSystem.concept[2].definition[0]The DiagnosticReport generated upon the task completion
CodeSystem.concept[3].code[0]RackId
CodeSystem.concept[3].display[0]Rack Number
CodeSystem.concept[3].definition[0]The specimen rack number
CodeSystem.concept[4].code[0]Specimen
CodeSystem.concept[4].display[0]Specimen
CodeSystem.concept[4].definition[0]The specimen provided for the task execution
CodeSystem.concept[5].code[0]WellId
CodeSystem.concept[5].display[0]Well Identification Number
CodeSystem.concept[5].definition[0]The specimen well identification number

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="additional-infotype-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics" />
<version value="0.1.0" />
<name value="AdditionalInfoTypeGenomics" />
<title value="Additional Information Type Genomics" />
<status value="draft" />
<date value="2024-05-31T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="Consent" />
<display value="Consent" />
<definition value="Consent for treatment record" />
</concept>
<concept>
<code value="ConsignmentNumber" />
<display value="Consignment Number" />
<definition value="The specimen consignment number" />
</concept>
<concept>
<code value="DiagnosticReport" />
<display value="DiagnosticReport" />
<definition value="The DiagnosticReport generated upon the task completion" />
</concept>
<concept>
<code value="RackId" />
<display value="Rack Number" />
<definition value="The specimen rack number" />
</concept>
<concept>
<code value="Specimen" />
<display value="Specimen" />
<definition value="The specimen provided for the task execution" />
</concept>
<concept>
<code value="WellId" />
<display value="Well Identification Number" />
<definition value="The specimen well identification number" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "additional-infotype-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics",
"version": "0.1.0",
"name": "AdditionalInfoTypeGenomics",
"title": "Additional Information Type Genomics",
"status": "draft",
"date": "2024-05-31T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "Consent",
"display": "Consent",
"definition": "Consent for treatment record"
},
{
"code": "ConsignmentNumber",
"display": "Consignment Number",
"definition": "The specimen consignment number"
},
{
"code": "DiagnosticReport",
"display": "DiagnosticReport",
"definition": "The DiagnosticReport generated upon the task completion"
},
{
"code": "RackId",
"display": "Rack Number",
"definition": "The specimen rack number"
},
{
"code": "Specimen",
"display": "Specimen",
"definition": "The specimen provided for the task execution"
},
{
"code": "WellId",
"display": "Well Identification Number",
"definition": "The specimen well identification number"
}
]
}

CodeSystem Business Status Genomics

Usage

Business status for test order Tasks in genomics

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/business-status-genomics defines the following codes:

CodeDisplay
determining-test-recoverabilityDetermining Test Recoverability
test-recoverableTest Recoverable
notifying-requester-of-failureNotifying Requester Of Failure
sample-requestedSample Requested (from external lab)
sample-availability-confirmedSample Availability Confirmed
sample-booked-into-labSample Booked Into Lab
variants-priorities-list-requiredVariants Priorities List Required
variants-priorities-list-retrievedVariants Priorities List Retrieved
previous-genomic-sequence-data-requiredPrevious Genomic Sequence Data Required
previous-genomic-sequence-data-retrievedPrevious Genomic Sequence Data Retrieved
remote-sample-prep-requiredRemote Sample Prep Required
sample-sentSample Sent
sample-receivedSample Received
sample-storedSample Stored
further-sample-prep-requiredFurther Sample Prep Required
remote-processing-requiredRemote Processing Required
remote-genomic-data-processing-requiredRemote Genomic Data Processing Required
remote-interpretation-requiredRemote Interpretation Required
further-clinical-details-requiredFurther Clinical Details Required
further-clinical-details-providedFurther Clinical Details Provided
reflex-confirmatory-test-requiredReflex/Confirmatory Test Required
reflex-confirmatory-test-completeReflex/Confirmatory Test Complete
otherother

Table View

CodeSystem.id[0]business-status-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/business-status-genomics
CodeSystem.version[0]0.4.1
CodeSystem.name[0]BusinessStatusGenomics
CodeSystem.title[0]Business Status Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-07-23
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]Business status for test order Tasks in genomics
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]determining-test-recoverability
CodeSystem.concept[0].display[0]Determining Test Recoverability
CodeSystem.concept[1].code[0]test-recoverable
CodeSystem.concept[1].display[0]Test Recoverable
CodeSystem.concept[2].code[0]notifying-requester-of-failure
CodeSystem.concept[2].display[0]Notifying Requester Of Failure
CodeSystem.concept[3].code[0]sample-requested
CodeSystem.concept[3].display[0]Sample Requested (from external lab)
CodeSystem.concept[4].code[0]sample-availability-confirmed
CodeSystem.concept[4].display[0]Sample Availability Confirmed
CodeSystem.concept[5].code[0]sample-booked-into-lab
CodeSystem.concept[5].display[0]Sample Booked Into Lab
CodeSystem.concept[6].code[0]variants-priorities-list-required
CodeSystem.concept[6].display[0]Variants Priorities List Required
CodeSystem.concept[7].code[0]variants-priorities-list-retrieved
CodeSystem.concept[7].display[0]Variants Priorities List Retrieved
CodeSystem.concept[8].code[0]previous-genomic-sequence-data-required
CodeSystem.concept[8].display[0]Previous Genomic Sequence Data Required
CodeSystem.concept[9].code[0]previous-genomic-sequence-data-retrieved
CodeSystem.concept[9].display[0]Previous Genomic Sequence Data Retrieved
CodeSystem.concept[10].code[0]remote-sample-prep-required
CodeSystem.concept[10].display[0]Remote Sample Prep Required
CodeSystem.concept[11].code[0]sample-sent
CodeSystem.concept[11].display[0]Sample Sent
CodeSystem.concept[12].code[0]sample-received
CodeSystem.concept[12].display[0]Sample Received
CodeSystem.concept[13].code[0]sample-stored
CodeSystem.concept[13].display[0]Sample Stored
CodeSystem.concept[14].code[0]further-sample-prep-required
CodeSystem.concept[14].display[0]Further Sample Prep Required
CodeSystem.concept[15].code[0]remote-processing-required
CodeSystem.concept[15].display[0]Remote Processing Required
CodeSystem.concept[16].code[0]remote-genomic-data-processing-required
CodeSystem.concept[16].display[0]Remote Genomic Data Processing Required
CodeSystem.concept[17].code[0]remote-interpretation-required
CodeSystem.concept[17].display[0]Remote Interpretation Required
CodeSystem.concept[18].code[0]further-clinical-details-required
CodeSystem.concept[18].display[0]Further Clinical Details Required
CodeSystem.concept[19].code[0]further-clinical-details-provided
CodeSystem.concept[19].display[0]Further Clinical Details Provided
CodeSystem.concept[20].code[0]reflex-confirmatory-test-required
CodeSystem.concept[20].display[0]Reflex/Confirmatory Test Required
CodeSystem.concept[21].code[0]reflex-confirmatory-test-complete
CodeSystem.concept[21].display[0]Reflex/Confirmatory Test Complete
CodeSystem.concept[22].code[0]other
CodeSystem.concept[22].display[0]other

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="business-status-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/business-status-genomics" />
<version value="0.4.1" />
<name value="BusinessStatusGenomics" />
<title value="Business Status Genomics" />
<status value="draft" />
<date value="2024-07-23" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="Business status for test order Tasks in genomics" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="determining-test-recoverability" />
<display value="Determining Test Recoverability" />
</concept>
<concept>
<code value="test-recoverable" />
<display value="Test Recoverable" />
</concept>
<concept>
<code value="notifying-requester-of-failure" />
<display value="Notifying Requester Of Failure" />
</concept>
<concept>
<code value="sample-requested" />
<display value="Sample Requested (from external lab)" />
</concept>
<concept>
<code value="sample-availability-confirmed" />
<display value="Sample Availability Confirmed" />
</concept>
<concept>
<code value="sample-booked-into-lab" />
<display value="Sample Booked Into Lab" />
</concept>
<concept>
<code value="variants-priorities-list-required" />
<display value="Variants Priorities List Required" />
</concept>
<concept>
<code value="variants-priorities-list-retrieved" />
<display value="Variants Priorities List Retrieved" />
</concept>
<concept>
<code value="previous-genomic-sequence-data-required" />
<display value="Previous Genomic Sequence Data Required" />
</concept>
<concept>
<code value="previous-genomic-sequence-data-retrieved" />
<display value="Previous Genomic Sequence Data Retrieved" />
</concept>
<concept>
<code value="remote-sample-prep-required" />
<display value="Remote Sample Prep Required" />
</concept>
<concept>
<code value="sample-sent" />
<display value="Sample Sent" />
</concept>
<concept>
<code value="sample-received" />
<display value="Sample Received" />
</concept>
<concept>
<code value="sample-stored" />
<display value="Sample Stored" />
</concept>
<concept>
<code value="further-sample-prep-required" />
<display value="Further Sample Prep Required" />
</concept>
<concept>
<code value="remote-processing-required" />
<display value="Remote Processing Required" />
</concept>
<concept>
<code value="remote-genomic-data-processing-required" />
<display value="Remote Genomic Data Processing Required" />
</concept>
<concept>
<code value="remote-interpretation-required" />
<display value="Remote Interpretation Required" />
</concept>
<concept>
<code value="further-clinical-details-required" />
<display value="Further Clinical Details Required" />
</concept>
<concept>
<code value="further-clinical-details-provided" />
<display value="Further Clinical Details Provided" />
</concept>
<concept>
<code value="reflex-confirmatory-test-required" />
<display value="Reflex/Confirmatory Test Required" />
</concept>
<concept>
<code value="reflex-confirmatory-test-complete" />
<display value="Reflex/Confirmatory Test Complete" />
</concept>
<concept>
<code value="other" />
<display value="other" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "business-status-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/business-status-genomics",
"version": "0.4.1",
"name": "BusinessStatusGenomics",
"title": "Business Status Genomics",
"status": "draft",
"date": "2024-07-23",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "Business status for test order Tasks in genomics",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "determining-test-recoverability",
"display": "Determining Test Recoverability"
},
{
"code": "test-recoverable",
"display": "Test Recoverable"
},
{
"code": "notifying-requester-of-failure",
"display": "Notifying Requester Of Failure"
},
{
"code": "sample-requested",
"display": "Sample Requested (from external lab)"
},
{
"code": "sample-availability-confirmed",
"display": "Sample Availability Confirmed"
},
{
"code": "sample-booked-into-lab",
"display": "Sample Booked Into Lab"
},
{
"code": "variants-priorities-list-required",
"display": "Variants Priorities List Required"
},
{
"code": "variants-priorities-list-retrieved",
"display": "Variants Priorities List Retrieved"
},
{
"code": "previous-genomic-sequence-data-required",
"display": "Previous Genomic Sequence Data Required"
},
{
"code": "previous-genomic-sequence-data-retrieved",
"display": "Previous Genomic Sequence Data Retrieved"
},
{
"code": "remote-sample-prep-required",
"display": "Remote Sample Prep Required"
},
{
"code": "sample-sent",
"display": "Sample Sent"
},
{
"code": "sample-received",
"display": "Sample Received"
},
{
"code": "sample-stored",
"display": "Sample Stored"
},
{
"code": "further-sample-prep-required",
"display": "Further Sample Prep Required"
},
{
"code": "remote-processing-required",
"display": "Remote Processing Required"
},
{
"code": "remote-genomic-data-processing-required",
"display": "Remote Genomic Data Processing Required"
},
{
"code": "remote-interpretation-required",
"display": "Remote Interpretation Required"
},
{
"code": "further-clinical-details-required",
"display": "Further Clinical Details Required"
},
{
"code": "further-clinical-details-provided",
"display": "Further Clinical Details Provided"
},
{
"code": "reflex-confirmatory-test-required",
"display": "Reflex/Confirmatory Test Required"
},
{
"code": "reflex-confirmatory-test-complete",
"display": "Reflex/Confirmatory Test Complete"
},
{
"code": "other",
"display": "other"
}
]
}

CodeSystem MDS Question Tag Genomics

Usage

A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics defines the following codes:

LvlCodeDisplayDefinition
1datagroup-healthcare-professionalHealthcare ProfessionalData group - Healthcare professional
2  HCP-1HCP - Genomic test order roleHCP's function within the genomic test ordering process
2  HCP-2HCP - Full nameHCP's full name.
2  HCP-3HCP - Job titleHCP's job title.
2  HCP-4HCP - Current specialtyHCP's current specialty.
2  HCP-5HCP - PhoneHCP's phone number.
2  HCP-6HCP - Email addressHCP's email address.
2  HCP-7HCP - Organisation nameHCP's organisation name.
2  HCP-8HCP - Organisation addressHCP's organisation address.
2  HCP-9HCP - Organisation ODS codeHCP's organisation ODS code (ORGANISATION IDENTIFIER (CODE OF ORDERING ENTITY))
2  HCP-10HCP - Department nameHCP's department name.
2  HCP-11HCP - Professional registration numberHCP's professional registration number such as their GMC number.
2  HCP-12HCP - Professional registration number typeHCP's professional registration number type such as 'GMC'.
2  HCP-13HCP - Genomic report delivery methodHCP's report preferred delivery method.
2  HCP-14HCP - Central email for address and reporting (many)Central email address provided by a HCP.
1datagroup-patientPatientData group - Patient
2  P-1Patient - TitlePatient's title.
2  P-2Patient - First namePatient's first name.
2  P-3Patient - SurnamePatient's last name.
2  P-4Patient - Date of birthPatient's date of birth.
2  P-5Patient - AddressPatient's home address.
2  P-6Patient - PostcodePatient's home postcode.
2  P-7Patient - CountryPatient's home country.
2  P-8Patient - Life status at time of requestPatient's alive or deceased status when ordering the test.
2  P-9Patient - EthnicityPatient's ethnicity. Includes 'other' / 'not stated'.
2  P-10Patient - Sex registered at birthPatient's phenotypic sex classification. Physical characteristic. Currently determined by the Dr at birth. Gender for PLCM.
2  P-11Patient - Organisation responsible for GP practice ODS codeODS code of organisation responsible for the GP Practice where the patient is registered.
2  P-12Patient - GP practice's ODS CodePatient's GP practice ODS code. Includes 'N/A' and 'Not Known'.
2  P-13Patient - Is from consanguineous unionThe fact of the patient's biological parents being descended from the same ancestor.
2  P-14Patient - GP's full namePatient's GP's full name.
2  P-15Patient - NHS numberPatient's NHS number.
2  P-16Patient - Local identifierPatient's identification code other than NHS number. (LOCAL PATIENT IDENTIFIER (EXTENDED))
2  P-17Patient - Reason for unavailable NHS numberReason for an NHS number not being provided.
2  P-18Patient - Relationship to probandThis patient's relationship to the primary patient.
2  P-19Patient - Gender IdentityPatient's stated gender, determined by the patient.
2  P-20Patient - Date of deathPatient's date/time of death.
2  P-21Patient - Chromosomal sexPatient's genomic / karyotypic characteristic. Determined by genomic testing.
2  P-22Patient - Pregnancy gestation periodPatient's term of active pregnancy at point of test request.
2  P-23Patient - Fetal gestationStage during patient pregnancy at which it terminated.
2  P-24Patient - Estimated delivery date (EDD)Patient's estimated delivery date.
2  P-25Patient - Pregnancy typeType of conception
2  P-26Patient - IVF age of egg donorThe age of the patient who donated the egg at the time of donation.
2  P-27Patient - Diagnosed with or being treated for cancerHas the patient been diagnosed with or are they being treated for cancer.
2  P-28Patient - Had transplantHas the patient ever had a transplant.
2  P-29Patient - Type of transplantWhat type of transplant the patient had.
2  P-30Patient - Transplant dateWhen the patient had the transplant.
2  P-31Patient - Had transfusion in the last 6 weeksHas the patient had a transfusion in the last 6 weeks.
2  P-32Patient - Type of transfusionWhat type of transfusion the patient has had.
2  P-33Patient - Transfusion dateWhen the patient had the transfusion.
2  P-34Patient - Height (m)Patient's height.
2  P-35Patient - Withheld identity reasonConfirmation why the patient is withholding identity details.
2  P-36Patient - GP's professional registration numberPatient's GP's professional registration number.
2  P-37Patient - Pedigree / Family identifierPatient's pedigree or family identifying id.
2  P-38Patient - Pregnancy statusPatient's pregnancy status.
1datagroup-fetusFetusData group - Fetus
2  F-1Fetus - Local identifierFetus' identification code other than NHS number.
2  F-2Fetus - Observed sexFetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM.
2  F-3Fetus - Chromosomal sexFetus' genomic / karyotypic characteristic. Determined by genomic testing.
2  F-4Fetus - Are multiple fetuses being testedConfirmation that multiple fetuses are being tested.
2  F-5Fetus - Is testing for fetal loss from 24 weeks of gestationConfirmation that the test is for a loss of pregnancy after 24 weeks gestation.
2  F-6Fetus - Life status at time of requestFetus' alive or deceased status details at the point of test ordering.
1datagroup-record-of-discussionRecord of DiscussionData group - Record of discussion
2  ROD-1RoD - IncludedHas RoD been included with request.
2  ROD-2RoD - Patient categoryConfirmation of who made the RoD decisions.
2  ROD-3RoD - Recording clinician nameName of the clinician who recorded the RoD details.
2  ROD-4RoD - Record of discussion form - copy attachedMarker to confirm on a test request form that an RoD has been included.
2  ROD-5RoD - Patient choice statusIndication of the patient consenting to the genomic test request.
2  ROD-6RoD - Has research participation been discussedMarker to confirm RoD conversation has taken place.
2  ROD-7RoD - Remote consentWhere consent has been recorded on behalf of the patient via remote confirmation.
2  ROD-8RoD - Test typeIf the test is WGS cancer or WGS rare disease.
2  ROD-9RoD - Research opt out reasonWhy patient has opted out of research.
2  ROD-10RoD - Responsible clinician nameName of the clinician who is responsible for the patient's genomic test request.
2  ROD-11RoD - Patient conversation taken place, ROD form to followMarker to confirm RoD conversation has taken place but will be sent separately.
2  ROD-12RoD - SignatureCopy of wet signature or valid e-signature.
2  ROD-13RoD - Document/LinkA copy of/or link to the previous genomic or non-genomic report.
1datagroup-test-requestTest RequestData group - Test Request
2  TR-1Test Request - Test request idUnique id to identify this test request.
2  TR-2Test Request - Payment statusHow the test request is funded
2  TR-3Test Request - Date and time request sentDate and time the test request was sent from the requesting clinician (TEST REQUEST DATE).
2  TR-4Test Request - Reason for testingThe reason for a genomic test.
2  TR-5Test Request - High level test identifierThe high level id which identifies the requested test. Options provided by Test Directory.
2  TR-6Test Request - High level test identifier descriptionThe high level name of the CI referred to.
2  TR-7Test Request - Low level test identifierThe low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE).
2  TR-8Test Request - Low level test identifier descriptionThe low level CITT name of the considered test.
2  TR-9Test Request - Low level multipurpose test identifierThe low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION).
2  TR-10Test Request - Low level multipurpose test identifier descriptionThe low level name of the test to be actioned when the CITT code is multipurpose.
2  TR-11Test Request - Count of patients to be testedCount of patients to be tested including the proband/primary patient.
2  TR-12Test Request - Urgency reasonThe test request urgency reason.
2  TR-13Test Request - Reason for reanalysisThe reason reanalysis has been requested.
2  TR-14Test Request - Detail of reason for reanalysisFurther detail associated to the reason reanalysis has been requested.
2  TR-15Test Request - Type of reanalysisThe type of reanalysis which has been requested.
2  TR-16Test Request - DNA storage informationIf the reason for testing is DNA storage, this captures further detail.
2  TR-17Test Request - Is urgentConfirmation if the test request is urgent.
2  TR-18Test Request - Date report required byThe date a completed genomic report is required by.
2  TR-19Test Request - Recipient ODS codeODS code of the first organisation which receives the genomic test request.
1datagroup-primary-samplePrimary SampleData group - Primary Sample
2  PS-1Primary Sample - Destination organisation ODS codeDestination for primary sample.
2  PS-2Primary Sample - Id (many)Id of primary sample provided, linked to the stated assigning authority.
2  PS-3Primary Sample - Id assigning authority ODS code (many)Authority who assigned the primary sample id.
2  PS-4Primary Sample - Received dateDate at which a primary sample was received at a laboratory (SAMPLE RECEIPT DATE).
2  PS-5Primary Sample - Sample storage detailsWhere a primary sample is in storage or where it needs to be stored.
2  PS-6Primary Sample - VolumeVolume of provided primary sample.
2  PS-7Primary Sample - Test request IdThe id of the associated genomic test being requested.
2  PS-8Primary Sample - Patient NHS numberPatient NHS number.
2  PS-9Primary Sample - Patient local identifierPatient identification code other than NHS number.
2  PS-10Primary Sample - Obtained dateDate at which a specimen/biopsy was obtained from patient.
2  PS-11Primary Sample - Primary sampleInitial sample from patient submitted into a laboratory.
2  PS-12Primary Sample - Primary sample stateHow the primary sample is preserved.
2  PS-13Primary Sample - Necrosis% necrotic cells in primary sample.
2  PS-14Primary Sample - Nucleated cell countNucleated cell count in the primary sample (Solid Tumour and Haem-Onc).
2  PS-15Primary Sample - Tumour nuclear contentNeoplastic cell content in the primary sample(Solid Tumour) - sourced at local lab. (%)
2  PS-16Primary Sample - Tumour cellularityThe proportion of the primary sample which is tumour nuclei.
2  PS-17Primary Sample - Solid tumour morphologyThe histology and likely course of development of a tumour.
2  PS-18Primary Sample - Solid tumour topographyThe tumour sample site. e.g. from colon, stomach etc.
2  PS-19Primary Sample - Biopsy siteSite where the primary sample was taken from.
2  PS-20Primary Sample - Skin/Bone sample affectedIf the skin or bone provided is unaffected or affected.
2  PS-21Primary Sample - Maternal cell contamination (MCC)Confirmation if MCC remains in the primary sample.
2  PS-22Primary Sample - Option for all products of conceptionFuture management for products of conception.
2  PS-23Primary Sample - Blasts %Blast count in the primary sample (Haemonc) - sourced at local SIHMDS.
2  PS-24Primary Sample - High infection risk reasonThe high contamination risk reason for a primary sample.
1datagroup-sample-preparationSample PreparationData group - Sample Preparation
2  SP-1Sample Preparation - Parent primary sample idId of primary sample this derived from
2  SP-2Sample Preparation - Id (many)Id of sample preparation provided, linked to the stated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER).
2  SP-3Sample Preparation - Id assigning authority ODS code (many)Authority who assigned the sample preparation id(ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY))
2  SP-4Sample Preparation - Sample storage detailsWhere sample preparation is in storage or where it needs to be stored.
2  SP-5Sample Preparation - VolumeVolume of provided sample preparation.
2  SP-6Sample Preparation - Performed dateDate at which the sample preparation was completed.
2  SP-7Sample Preparation - Received dateDate at which sample preparation was received at a laboratory (SAMPLE RECEIPT DATE).
2  SP-8Sample Preparation - Sample preparationCell separation applied to a primary sample.
1datagroup-final-sampleFinal SampleData group - Final Sample
2  FS-1Final Sample - Parent primary sample idId of primary this derived from.
2  FS-2Final Sample - Parent sample preparation idId of sample preparation this derived from.
2  FS-3Final Sample - Id (many)Id of final sample provided, linked to the associated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER).
2  FS-4Final Sample - Id assigning authority ODS code (many)Authority who assigned the final sample id ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY).
2  FS-5Final Sample - Sample storage detailsWhere a final sample is in storage or where it needs to be stored.
2  FS-6Final Sample - VolumeVolume of provided final sample.
2  FS-7Final Sample - Performed dateDate at which the final sample was extracted.
2  FS-8Final Sample - Received dateDate at which a final sample was received at a laboratory (SAMPLE RECEIPT DATE).
2  FS-9Final Sample - Final sampleMaterial to be genomically tested.
1datagroup-previous-genomic-reportPrevious Genomic ReportData group - Previous Genomic Report
2  PGR-1Previous Genomic Report - Report referral summaryReferring clinician's summary of the previous genomic report to support test request.
2  PGR-2Previous Genomic Report - Report file/linkA copy of/or link to the previous genomic report.
2  PGR-3Previous Genomic Report - Test performed dateThe date a previous genomic test was performed.
2  PGR-4Previous Genomic Report - Report identifierThe identifier for the previous genomic report.
2  PGR-5Previous Genomic Report - Patient's first nameThe first name of the patient on the previous genomic report.
2  PGR-6Previous Genomic Report - Patient's surnameThe surname of the patient on the previous genomic report.
2  PGR-7Previous Genomic Report - Patient's addressThe address of the patient on the previous genomic report.
2  PGR-8Previous Genomic Report - Patient's post codeThe postcode of the patient on the previous genomic report.
2  PGR-9Previous Genomic Report - Patient's countryThe country of the patient on the previous genomic report.
2  PGR-10Previous Genomic Report - Patient's date of birthThe date of birth of the patient on the previous genomic report.
2  PGR-11Previous Genomic Report - Patient's NHS numberThe NHS number of the patient on the previous genomic report.
2  PGR-12Previous Genomic Report - Patient's alternative identifierThe alternative identifier of the patient on the previous genomic report.
2  PGR-13Previous Genomic Report - Patient's relationship to requesting patientThe relationship of the patient on the previous genomic report to the requesting patient.
2  PGR-14Previous Genomic Report - Patient's clinical genetic numberThe individual clinical genetic number of the patient on the previous genomic report.
2  PGR-15Previous Genomic Report - Patient's pedigree numberThe pedigree number of the patient on the previous genomic report which links their family.
2  PGR-16Previous Genomic Report - Report lab test numberThe lab test number from the previous genomic report.
2  PGR-17Previous Genomic Report - Report of genetic analysisThe clinical outcomes from the previous genomic report.
2  PGR-18Previous Genomic Report - Report performer full nameThe full name of the individual that authored the previous genomic test report.
2  PGR-19Previous Genomic Report - Report performer organisation ODS codeThe organisation ODS code of the individual that authored the previous genomic test report.
2  PGR-20Previous Genomic Report - Original requester full nameThe full name of the individual that requested the previous genomic test report.
2  PGR-21Previous Genomic Report - Original requester organisation ODS codeThe organisation ODS code of the individual that requested the previous genomic test report.
2  PGR-22Previous Genomic Report - Original requester reason for requestThe reason for requesting the previous genomic test report.
1datagroup-relevant-clinical-reportRelevant Clinical ReportData group - Relevant Clinical Report
2  RCP-1Relevant Clinical Report - Report titleTitle of relevant clinical report.
2  RCP-2Relevant Clinical Report - Report referral summaryReferring clinician's summary of the previous relevant clinical report to support test request.
2  RCP-3Relevant Clinical Report - Report file/linkA copy of/or link to the relevant clinical report.
2  RCP-4Relevant Clinical Report - Test performed dateThe date a relevant clinical report was performed.
2  RCP-5Relevant Clinical Report - Report identifierThe identifier for the relevant clinical report.
2  RCP-6Relevant Clinical Report - Test typeA name that describes the relevant clinical report.
2  RCP-7Relevant Clinical Report - Test result value comparatorA comparator that may be used to indicate whether the actual value is greater or less than the stated value. Applies to numeric values only.
2  RCP-8Relevant Clinical Report - Test result value unit of measureThe name and code of the unit of measure associated with the test result value. Applies to numeric values only.
2  RCP-9Relevant Clinical Report - Test result reference range lowThe reference range low value.
2  RCP-10Relevant Clinical Report - Test result reference range highThe reference range high value.
2  RCP-11Relevant Clinical Report - Test result test methodThe method of testing/observation that was used.
2  RCP-12Relevant Clinical Report - Test result reference range textA human readable text-based description to provide additional information about the reference range. For example, the target population that the reference range applies to and/or differences based on factors such as age or sex.
2  RCP-13Relevant Clinical Report - Test result clinical summaryA human readable text-based clinical interpretation of the test result and any additional notes provided by the performing organisation.
2  RCP-14Relevant Clinical Report - Report resultReference to the result(s)/result groups contained in the relevant clinical report
2  RCP-15Relevant Clinical Report - Report performer full nameThe full name of the individual that authored the relevant clinical report.
2  RCP-16Relevant Clinical Report - Report performer organisation ODS codeThe identifier of the org which authored the patient's relevant clinical report.
2  RCP-17Relevant Clinical Report - Original requester full nameThe full name of the individual that requested the relevant clinical report.
2  RCP-18Relevant Clinical Report - Original requester organisation ODS codeThe organisation ODS code of the individual that requested the relevant clinical report.
2  RCP-19Relevant Clinical Report - Original requester reason for requestThe reason for requesting the relevant clinical report.
1datagroup-patient-clinical-informationPatient Clinical InformationData group - Patient Clinical Information
2  PCI-1Genomic EthnicityPatient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish
2  PCI-2Disease StatusIf the patient is affected, unaffected, or it is unknown.
2  PCI-3Date of DiagnosisThe patient's date of diagnosis.
2  PCI-4Age at disease onsetThe age when a change in patients' health was first noted in line with suspected diagnosis.
2  PCI-5Known/Suspected DiseaseDisease a patient is believed, known to have, or be at risk of developing.
2  PCI-6Phenotypic details (many)The HPO (or alternative ontology as appropriate) term names for the observable disease traits.
2  PCI-7Symptoms at onsetThe patient's symptoms at onset.
2  PCI-8Disease penetranceConfirms if all individuals with a disease show clinical symptoms or if there are carriers who do not.
2  PCI-9Has multiple tumoursDoes the patient have multiple tumours.
2  PCI-10Count of tumoursHow many tumours the patient has.
2  PCI-11Site of tumour (many)Location of the tumours on the body.
2  PCI-12Solid Tumour TypeThe patient's solid tumour type.
2  PCI-13Liquid Tumour TypeThe patient's liquid tumour type.
2  PCI-14Tumour sites - Body image diagramImage attachment of body with tumour sites highlighted.
2  PCI-15Pedigree details / Relevant family historyThe patient's pedigree/family history details (inc family history of cancer).
2  PCI-16Pedigree diagramImage attachment of pedigree details
2  PCI-17Laterality of hearing lossLaterality of the hearing loss i.e. bilateral or unilateral.
2  PCI-18Fetal maternal screening genotypeMaternal screening genotype for haemoglobinopathy testing.
2  PCI-19Is patient on TKI therapyIf the patient is on tyrosine kinase inhibitor therapy.
2  PCI-20Is patient in treatment free remissionIf the patient is in treatment free remission.
2  PCI-21Legal considerationsLegal considerations for a given request.
2  PCI-22Fetal paternal screening genotypePaternal screening genotype for haemoglobinopathy testing.
2  PCI-23Expected Maternity Unit - Organisation nameRequesting clinician's organisation name.
2  PCI-24Expected Maternity Unit - Organisation addressRequesting clinician's organisation address.
2  PCI-25Expected Maternity Unit - Organisation ODS codeRequesting clinician's organisation ODS code.
2  PCI-26Expected Maternity Unit - Department nameRequesting clinician's department name.
2  PCI-27Growth historySummary passage of text to highlight patient centile history e.g. head circumference, weight, etc.
2  PCI-28Severity of hearing lossFree text regarding hearing loss
2  PCI-29Retinal degenerationFree text regarding retinal degeneration
2  PCI-30Risk factorsToxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication.
2  PCI-31Suspected inborn error type(s)Suspected inborn error type(s)
2  PCI-32Abnormal infection history siteAbnormal infection history site organism
2  PCI-33Abnormal infection history site organismAbnormal infection history site organism
2  PCI-34Is on ig replacementIf the patient is on immunoglobin replacement treatment.
1further-supporting-informationFurther Supporting InformationData group - Further Supporting Information
2  FSI-1Further Supporting InformationSupporting information which has not been captured elsewhere.

Table View

CodeSystem.id[0]mds-questiontag-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics
CodeSystem.version[0]0.1.0
CodeSystem.name[0]MDSQuestionTagGenomics
CodeSystem.title[0]MDS Question Tag Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2025-07-29T00:00:00.000Z
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.description[0]A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag.
CodeSystem.copyright[0]Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.hierarchyMeaning[0]grouped-by
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]datagroup-healthcare-professional
CodeSystem.concept[0].display[0]Healthcare Professional
CodeSystem.concept[0].definition[0]Data group - Healthcare professional
CodeSystem.concept[0].concept[0].code[0]HCP-1
CodeSystem.concept[0].concept[0].display[0]HCP - Genomic test order role
CodeSystem.concept[0].concept[0].definition[0]HCP's function within the genomic test ordering process
CodeSystem.concept[0].concept[1].code[0]HCP-2
CodeSystem.concept[0].concept[1].display[0]HCP - Full name
CodeSystem.concept[0].concept[1].definition[0]HCP's full name.
CodeSystem.concept[0].concept[2].code[0]HCP-3
CodeSystem.concept[0].concept[2].display[0]HCP - Job title
CodeSystem.concept[0].concept[2].definition[0]HCP's job title.
CodeSystem.concept[0].concept[3].code[0]HCP-4
CodeSystem.concept[0].concept[3].display[0]HCP - Current specialty
CodeSystem.concept[0].concept[3].definition[0]HCP's current specialty.
CodeSystem.concept[0].concept[4].code[0]HCP-5
CodeSystem.concept[0].concept[4].display[0]HCP - Phone
CodeSystem.concept[0].concept[4].definition[0]HCP's phone number.
CodeSystem.concept[0].concept[5].code[0]HCP-6
CodeSystem.concept[0].concept[5].display[0]HCP - Email address
CodeSystem.concept[0].concept[5].definition[0]HCP's email address.
CodeSystem.concept[0].concept[6].code[0]HCP-7
CodeSystem.concept[0].concept[6].display[0]HCP - Organisation name
CodeSystem.concept[0].concept[6].definition[0]HCP's organisation name.
CodeSystem.concept[0].concept[7].code[0]HCP-8
CodeSystem.concept[0].concept[7].display[0]HCP - Organisation address
CodeSystem.concept[0].concept[7].definition[0]HCP's organisation address.
CodeSystem.concept[0].concept[8].code[0]HCP-9
CodeSystem.concept[0].concept[8].display[0]HCP - Organisation ODS code
CodeSystem.concept[0].concept[8].definition[0]HCP's organisation ODS code (ORGANISATION IDENTIFIER (CODE OF ORDERING ENTITY))
CodeSystem.concept[0].concept[9].code[0]HCP-10
CodeSystem.concept[0].concept[9].display[0]HCP - Department name
CodeSystem.concept[0].concept[9].definition[0]HCP's department name.
CodeSystem.concept[0].concept[10].code[0]HCP-11
CodeSystem.concept[0].concept[10].display[0]HCP - Professional registration number
CodeSystem.concept[0].concept[10].definition[0]HCP's professional registration number such as their GMC number.
CodeSystem.concept[0].concept[11].code[0]HCP-12
CodeSystem.concept[0].concept[11].display[0]HCP - Professional registration number type
CodeSystem.concept[0].concept[11].definition[0]HCP's professional registration number type such as 'GMC'.
CodeSystem.concept[0].concept[12].code[0]HCP-13
CodeSystem.concept[0].concept[12].display[0]HCP - Genomic report delivery method
CodeSystem.concept[0].concept[12].definition[0]HCP's report preferred delivery method.
CodeSystem.concept[0].concept[13].code[0]HCP-14
CodeSystem.concept[0].concept[13].display[0]HCP - Central email for address and reporting (many)
CodeSystem.concept[0].concept[13].definition[0]Central email address provided by a HCP.
CodeSystem.concept[1].code[0]datagroup-patient
CodeSystem.concept[1].display[0]Patient
CodeSystem.concept[1].definition[0]Data group - Patient
CodeSystem.concept[1].concept[0].code[0]P-1
CodeSystem.concept[1].concept[0].display[0]Patient - Title
CodeSystem.concept[1].concept[0].definition[0]Patient's title.
CodeSystem.concept[1].concept[1].code[0]P-2
CodeSystem.concept[1].concept[1].display[0]Patient - First name
CodeSystem.concept[1].concept[1].definition[0]Patient's first name.
CodeSystem.concept[1].concept[2].code[0]P-3
CodeSystem.concept[1].concept[2].display[0]Patient - Surname
CodeSystem.concept[1].concept[2].definition[0]Patient's last name.
CodeSystem.concept[1].concept[3].code[0]P-4
CodeSystem.concept[1].concept[3].display[0]Patient - Date of birth
CodeSystem.concept[1].concept[3].definition[0]Patient's date of birth.
CodeSystem.concept[1].concept[4].code[0]P-5
CodeSystem.concept[1].concept[4].display[0]Patient - Address
CodeSystem.concept[1].concept[4].definition[0]Patient's home address.
CodeSystem.concept[1].concept[5].code[0]P-6
CodeSystem.concept[1].concept[5].display[0]Patient - Postcode
CodeSystem.concept[1].concept[5].definition[0]Patient's home postcode.
CodeSystem.concept[1].concept[6].code[0]P-7
CodeSystem.concept[1].concept[6].display[0]Patient - Country
CodeSystem.concept[1].concept[6].definition[0]Patient's home country.
CodeSystem.concept[1].concept[7].code[0]P-8
CodeSystem.concept[1].concept[7].display[0]Patient - Life status at time of request
CodeSystem.concept[1].concept[7].definition[0]Patient's alive or deceased status when ordering the test.
CodeSystem.concept[1].concept[8].code[0]P-9
CodeSystem.concept[1].concept[8].display[0]Patient - Ethnicity
CodeSystem.concept[1].concept[8].definition[0]Patient's ethnicity. Includes 'other' / 'not stated'.
CodeSystem.concept[1].concept[9].code[0]P-10
CodeSystem.concept[1].concept[9].display[0]Patient - Sex registered at birth
CodeSystem.concept[1].concept[9].definition[0]Patient's phenotypic sex classification. Physical characteristic. Currently determined by the Dr at birth. Gender for PLCM.
CodeSystem.concept[1].concept[10].code[0]P-11
CodeSystem.concept[1].concept[10].display[0]Patient - Organisation responsible for GP practice ODS code
CodeSystem.concept[1].concept[10].definition[0]ODS code of organisation responsible for the GP Practice where the patient is registered.
CodeSystem.concept[1].concept[11].code[0]P-12
CodeSystem.concept[1].concept[11].display[0]Patient - GP practice's ODS Code
CodeSystem.concept[1].concept[11].definition[0]Patient's GP practice ODS code. Includes 'N/A' and 'Not Known'.
CodeSystem.concept[1].concept[12].code[0]P-13
CodeSystem.concept[1].concept[12].display[0]Patient - Is from consanguineous union
CodeSystem.concept[1].concept[12].definition[0]The fact of the patient's biological parents being descended from the same ancestor.
CodeSystem.concept[1].concept[13].code[0]P-14
CodeSystem.concept[1].concept[13].display[0]Patient - GP's full name
CodeSystem.concept[1].concept[13].definition[0]Patient's GP's full name.
CodeSystem.concept[1].concept[14].code[0]P-15
CodeSystem.concept[1].concept[14].display[0]Patient - NHS number
CodeSystem.concept[1].concept[14].definition[0]Patient's NHS number.
CodeSystem.concept[1].concept[15].code[0]P-16
CodeSystem.concept[1].concept[15].display[0]Patient - Local identifier
CodeSystem.concept[1].concept[15].definition[0]Patient's identification code other than NHS number. (LOCAL PATIENT IDENTIFIER (EXTENDED))
CodeSystem.concept[1].concept[16].code[0]P-17
CodeSystem.concept[1].concept[16].display[0]Patient - Reason for unavailable NHS number
CodeSystem.concept[1].concept[16].definition[0]Reason for an NHS number not being provided.
CodeSystem.concept[1].concept[17].code[0]P-18
CodeSystem.concept[1].concept[17].display[0]Patient - Relationship to proband
CodeSystem.concept[1].concept[17].definition[0]This patient's relationship to the primary patient.
CodeSystem.concept[1].concept[18].code[0]P-19
CodeSystem.concept[1].concept[18].display[0]Patient - Gender Identity
CodeSystem.concept[1].concept[18].definition[0]Patient's stated gender, determined by the patient.
CodeSystem.concept[1].concept[19].code[0]P-20
CodeSystem.concept[1].concept[19].display[0]Patient - Date of death
CodeSystem.concept[1].concept[19].definition[0]Patient's date/time of death.
CodeSystem.concept[1].concept[20].code[0]P-21
CodeSystem.concept[1].concept[20].display[0]Patient - Chromosomal sex
CodeSystem.concept[1].concept[20].definition[0]Patient's genomic / karyotypic characteristic. Determined by genomic testing.
CodeSystem.concept[1].concept[21].code[0]P-22
CodeSystem.concept[1].concept[21].display[0]Patient - Pregnancy gestation period
CodeSystem.concept[1].concept[21].definition[0]Patient's term of active pregnancy at point of test request.
CodeSystem.concept[1].concept[22].code[0]P-23
CodeSystem.concept[1].concept[22].display[0]Patient - Fetal gestation
CodeSystem.concept[1].concept[22].definition[0]Stage during patient pregnancy at which it terminated.
CodeSystem.concept[1].concept[23].code[0]P-24
CodeSystem.concept[1].concept[23].display[0]Patient - Estimated delivery date (EDD)
CodeSystem.concept[1].concept[23].definition[0]Patient's estimated delivery date.
CodeSystem.concept[1].concept[24].code[0]P-25
CodeSystem.concept[1].concept[24].display[0]Patient - Pregnancy type
CodeSystem.concept[1].concept[24].definition[0]Type of conception
CodeSystem.concept[1].concept[25].code[0]P-26
CodeSystem.concept[1].concept[25].display[0]Patient - IVF age of egg donor
CodeSystem.concept[1].concept[25].definition[0]The age of the patient who donated the egg at the time of donation.
CodeSystem.concept[1].concept[26].code[0]P-27
CodeSystem.concept[1].concept[26].display[0]Patient - Diagnosed with or being treated for cancer
CodeSystem.concept[1].concept[26].definition[0]Has the patient been diagnosed with or are they being treated for cancer.
CodeSystem.concept[1].concept[27].code[0]P-28
CodeSystem.concept[1].concept[27].display[0]Patient - Had transplant
CodeSystem.concept[1].concept[27].definition[0]Has the patient ever had a transplant.
CodeSystem.concept[1].concept[28].code[0]P-29
CodeSystem.concept[1].concept[28].display[0]Patient - Type of transplant
CodeSystem.concept[1].concept[28].definition[0]What type of transplant the patient had.
CodeSystem.concept[1].concept[29].code[0]P-30
CodeSystem.concept[1].concept[29].display[0]Patient - Transplant date
CodeSystem.concept[1].concept[29].definition[0]When the patient had the transplant.
CodeSystem.concept[1].concept[30].code[0]P-31
CodeSystem.concept[1].concept[30].display[0]Patient - Had transfusion in the last 6 weeks
CodeSystem.concept[1].concept[30].definition[0]Has the patient had a transfusion in the last 6 weeks.
CodeSystem.concept[1].concept[31].code[0]P-32
CodeSystem.concept[1].concept[31].display[0]Patient - Type of transfusion
CodeSystem.concept[1].concept[31].definition[0]What type of transfusion the patient has had.
CodeSystem.concept[1].concept[32].code[0]P-33
CodeSystem.concept[1].concept[32].display[0]Patient - Transfusion date
CodeSystem.concept[1].concept[32].definition[0]When the patient had the transfusion.
CodeSystem.concept[1].concept[33].code[0]P-34
CodeSystem.concept[1].concept[33].display[0]Patient - Height (m)
CodeSystem.concept[1].concept[33].definition[0]Patient's height.
CodeSystem.concept[1].concept[34].code[0]P-35
CodeSystem.concept[1].concept[34].display[0]Patient - Withheld identity reason
CodeSystem.concept[1].concept[34].definition[0]Confirmation why the patient is withholding identity details.
CodeSystem.concept[1].concept[35].code[0]P-36
CodeSystem.concept[1].concept[35].display[0]Patient - GP's professional registration number
CodeSystem.concept[1].concept[35].definition[0]Patient's GP's professional registration number.
CodeSystem.concept[1].concept[36].code[0]P-37
CodeSystem.concept[1].concept[36].display[0]Patient - Pedigree / Family identifier
CodeSystem.concept[1].concept[36].definition[0]Patient's pedigree or family identifying id.
CodeSystem.concept[1].concept[37].code[0]P-38
CodeSystem.concept[1].concept[37].display[0]Patient - Pregnancy status
CodeSystem.concept[1].concept[37].definition[0]Patient's pregnancy status.
CodeSystem.concept[2].code[0]datagroup-fetus
CodeSystem.concept[2].display[0]Fetus
CodeSystem.concept[2].definition[0]Data group - Fetus
CodeSystem.concept[2].concept[0].code[0]F-1
CodeSystem.concept[2].concept[0].display[0]Fetus - Local identifier
CodeSystem.concept[2].concept[0].definition[0]Fetus' identification code other than NHS number.
CodeSystem.concept[2].concept[1].code[0]F-2
CodeSystem.concept[2].concept[1].display[0]Fetus - Observed sex
CodeSystem.concept[2].concept[1].definition[0]Fetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM.
CodeSystem.concept[2].concept[2].code[0]F-3
CodeSystem.concept[2].concept[2].display[0]Fetus - Chromosomal sex
CodeSystem.concept[2].concept[2].definition[0]Fetus' genomic / karyotypic characteristic. Determined by genomic testing.
CodeSystem.concept[2].concept[3].code[0]F-4
CodeSystem.concept[2].concept[3].display[0]Fetus - Are multiple fetuses being tested
CodeSystem.concept[2].concept[3].definition[0]Confirmation that multiple fetuses are being tested.
CodeSystem.concept[2].concept[4].code[0]F-5
CodeSystem.concept[2].concept[4].display[0]Fetus - Is testing for fetal loss from 24 weeks of gestation
CodeSystem.concept[2].concept[4].definition[0]Confirmation that the test is for a loss of pregnancy after 24 weeks gestation.
CodeSystem.concept[2].concept[5].code[0]F-6
CodeSystem.concept[2].concept[5].display[0]Fetus - Life status at time of request
CodeSystem.concept[2].concept[5].definition[0]Fetus' alive or deceased status details at the point of test ordering.
CodeSystem.concept[3].code[0]datagroup-record-of-discussion
CodeSystem.concept[3].display[0]Record of Discussion
CodeSystem.concept[3].definition[0]Data group - Record of discussion
CodeSystem.concept[3].concept[0].code[0]ROD-1
CodeSystem.concept[3].concept[0].display[0]RoD - Included
CodeSystem.concept[3].concept[0].definition[0]Has RoD been included with request.
CodeSystem.concept[3].concept[1].code[0]ROD-2
CodeSystem.concept[3].concept[1].display[0]RoD - Patient category
CodeSystem.concept[3].concept[1].definition[0]Confirmation of who made the RoD decisions.
CodeSystem.concept[3].concept[2].code[0]ROD-3
CodeSystem.concept[3].concept[2].display[0]RoD - Recording clinician name
CodeSystem.concept[3].concept[2].definition[0]Name of the clinician who recorded the RoD details.
CodeSystem.concept[3].concept[3].code[0]ROD-4
CodeSystem.concept[3].concept[3].display[0]RoD - Record of discussion form - copy attached
CodeSystem.concept[3].concept[3].definition[0]Marker to confirm on a test request form that an RoD has been included.
CodeSystem.concept[3].concept[4].code[0]ROD-5
CodeSystem.concept[3].concept[4].display[0]RoD - Patient choice status
CodeSystem.concept[3].concept[4].definition[0]Indication of the patient consenting to the genomic test request.
CodeSystem.concept[3].concept[5].code[0]ROD-6
CodeSystem.concept[3].concept[5].display[0]RoD - Has research participation been discussed
CodeSystem.concept[3].concept[5].definition[0]Marker to confirm RoD conversation has taken place.
CodeSystem.concept[3].concept[6].code[0]ROD-7
CodeSystem.concept[3].concept[6].display[0]RoD - Remote consent
CodeSystem.concept[3].concept[6].definition[0]Where consent has been recorded on behalf of the patient via remote confirmation.
CodeSystem.concept[3].concept[7].code[0]ROD-8
CodeSystem.concept[3].concept[7].display[0]RoD - Test type
CodeSystem.concept[3].concept[7].definition[0]If the test is WGS cancer or WGS rare disease.
CodeSystem.concept[3].concept[8].code[0]ROD-9
CodeSystem.concept[3].concept[8].display[0]RoD - Research opt out reason
CodeSystem.concept[3].concept[8].definition[0]Why patient has opted out of research.
CodeSystem.concept[3].concept[9].code[0]ROD-10
CodeSystem.concept[3].concept[9].display[0]RoD - Responsible clinician name
CodeSystem.concept[3].concept[9].definition[0]Name of the clinician who is responsible for the patient's genomic test request.
CodeSystem.concept[3].concept[10].code[0]ROD-11
CodeSystem.concept[3].concept[10].display[0]RoD - Patient conversation taken place, ROD form to follow
CodeSystem.concept[3].concept[10].definition[0]Marker to confirm RoD conversation has taken place but will be sent separately.
CodeSystem.concept[3].concept[11].code[0]ROD-12
CodeSystem.concept[3].concept[11].display[0]RoD - Signature
CodeSystem.concept[3].concept[11].definition[0]Copy of wet signature or valid e-signature.
CodeSystem.concept[3].concept[12].code[0]ROD-13
CodeSystem.concept[3].concept[12].display[0]RoD - Document/Link
CodeSystem.concept[3].concept[12].definition[0]A copy of/or link to the previous genomic or non-genomic report.
CodeSystem.concept[4].code[0]datagroup-test-request
CodeSystem.concept[4].display[0]Test Request
CodeSystem.concept[4].definition[0]Data group - Test Request
CodeSystem.concept[4].concept[0].code[0]TR-1
CodeSystem.concept[4].concept[0].display[0]Test Request - Test request id
CodeSystem.concept[4].concept[0].definition[0]Unique id to identify this test request.
CodeSystem.concept[4].concept[1].code[0]TR-2
CodeSystem.concept[4].concept[1].display[0]Test Request - Payment status
CodeSystem.concept[4].concept[1].definition[0]How the test request is funded
CodeSystem.concept[4].concept[2].code[0]TR-3
CodeSystem.concept[4].concept[2].display[0]Test Request - Date and time request sent
CodeSystem.concept[4].concept[2].definition[0]Date and time the test request was sent from the requesting clinician (TEST REQUEST DATE).
CodeSystem.concept[4].concept[3].code[0]TR-4
CodeSystem.concept[4].concept[3].display[0]Test Request - Reason for testing
CodeSystem.concept[4].concept[3].definition[0]The reason for a genomic test.
CodeSystem.concept[4].concept[4].code[0]TR-5
CodeSystem.concept[4].concept[4].display[0]Test Request - High level test identifier
CodeSystem.concept[4].concept[4].definition[0]The high level id which identifies the requested test. Options provided by Test Directory.
CodeSystem.concept[4].concept[5].code[0]TR-6
CodeSystem.concept[4].concept[5].display[0]Test Request - High level test identifier description
CodeSystem.concept[4].concept[5].definition[0]The high level name of the CI referred to.
CodeSystem.concept[4].concept[6].code[0]TR-7
CodeSystem.concept[4].concept[6].display[0]Test Request - Low level test identifier
CodeSystem.concept[4].concept[6].definition[0]The low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE).
CodeSystem.concept[4].concept[7].code[0]TR-8
CodeSystem.concept[4].concept[7].display[0]Test Request - Low level test identifier description
CodeSystem.concept[4].concept[7].definition[0]The low level CITT name of the considered test.
CodeSystem.concept[4].concept[8].code[0]TR-9
CodeSystem.concept[4].concept[8].display[0]Test Request - Low level multipurpose test identifier
CodeSystem.concept[4].concept[8].definition[0]The low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION).
CodeSystem.concept[4].concept[9].code[0]TR-10
CodeSystem.concept[4].concept[9].display[0]Test Request - Low level multipurpose test identifier description
CodeSystem.concept[4].concept[9].definition[0]The low level name of the test to be actioned when the CITT code is multipurpose.
CodeSystem.concept[4].concept[10].code[0]TR-11
CodeSystem.concept[4].concept[10].display[0]Test Request - Count of patients to be tested
CodeSystem.concept[4].concept[10].definition[0]Count of patients to be tested including the proband/primary patient.
CodeSystem.concept[4].concept[11].code[0]TR-12
CodeSystem.concept[4].concept[11].display[0]Test Request - Urgency reason
CodeSystem.concept[4].concept[11].definition[0]The test request urgency reason.
CodeSystem.concept[4].concept[12].code[0]TR-13
CodeSystem.concept[4].concept[12].display[0]Test Request - Reason for reanalysis
CodeSystem.concept[4].concept[12].definition[0]The reason reanalysis has been requested.
CodeSystem.concept[4].concept[13].code[0]TR-14
CodeSystem.concept[4].concept[13].display[0]Test Request - Detail of reason for reanalysis
CodeSystem.concept[4].concept[13].definition[0]Further detail associated to the reason reanalysis has been requested.
CodeSystem.concept[4].concept[14].code[0]TR-15
CodeSystem.concept[4].concept[14].display[0]Test Request - Type of reanalysis
CodeSystem.concept[4].concept[14].definition[0]The type of reanalysis which has been requested.
CodeSystem.concept[4].concept[15].code[0]TR-16
CodeSystem.concept[4].concept[15].display[0]Test Request - DNA storage information
CodeSystem.concept[4].concept[15].definition[0]If the reason for testing is DNA storage, this captures further detail.
CodeSystem.concept[4].concept[16].code[0]TR-17
CodeSystem.concept[4].concept[16].display[0]Test Request - Is urgent
CodeSystem.concept[4].concept[16].definition[0]Confirmation if the test request is urgent.
CodeSystem.concept[4].concept[17].code[0]TR-18
CodeSystem.concept[4].concept[17].display[0]Test Request - Date report required by
CodeSystem.concept[4].concept[17].definition[0]The date a completed genomic report is required by.
CodeSystem.concept[4].concept[18].code[0]TR-19
CodeSystem.concept[4].concept[18].display[0]Test Request - Recipient ODS code
CodeSystem.concept[4].concept[18].definition[0]ODS code of the first organisation which receives the genomic test request.
CodeSystem.concept[5].code[0]datagroup-primary-sample
CodeSystem.concept[5].display[0]Primary Sample
CodeSystem.concept[5].definition[0]Data group - Primary Sample
CodeSystem.concept[5].concept[0].code[0]PS-1
CodeSystem.concept[5].concept[0].display[0]Primary Sample - Destination organisation ODS code
CodeSystem.concept[5].concept[0].definition[0]Destination for primary sample.
CodeSystem.concept[5].concept[1].code[0]PS-2
CodeSystem.concept[5].concept[1].display[0]Primary Sample - Id (many)
CodeSystem.concept[5].concept[1].definition[0]Id of primary sample provided, linked to the stated assigning authority.
CodeSystem.concept[5].concept[2].code[0]PS-3
CodeSystem.concept[5].concept[2].display[0]Primary Sample - Id assigning authority ODS code (many)
CodeSystem.concept[5].concept[2].definition[0]Authority who assigned the primary sample id.
CodeSystem.concept[5].concept[3].code[0]PS-4
CodeSystem.concept[5].concept[3].display[0]Primary Sample - Received date
CodeSystem.concept[5].concept[3].definition[0]Date at which a primary sample was received at a laboratory (SAMPLE RECEIPT DATE).
CodeSystem.concept[5].concept[4].code[0]PS-5
CodeSystem.concept[5].concept[4].display[0]Primary Sample - Sample storage details
CodeSystem.concept[5].concept[4].definition[0]Where a primary sample is in storage or where it needs to be stored.
CodeSystem.concept[5].concept[5].code[0]PS-6
CodeSystem.concept[5].concept[5].display[0]Primary Sample - Volume
CodeSystem.concept[5].concept[5].definition[0]Volume of provided primary sample.
CodeSystem.concept[5].concept[6].code[0]PS-7
CodeSystem.concept[5].concept[6].display[0]Primary Sample - Test request Id
CodeSystem.concept[5].concept[6].definition[0]The id of the associated genomic test being requested.
CodeSystem.concept[5].concept[7].code[0]PS-8
CodeSystem.concept[5].concept[7].display[0]Primary Sample - Patient NHS number
CodeSystem.concept[5].concept[7].definition[0]Patient NHS number.
CodeSystem.concept[5].concept[8].code[0]PS-9
CodeSystem.concept[5].concept[8].display[0]Primary Sample - Patient local identifier
CodeSystem.concept[5].concept[8].definition[0]Patient identification code other than NHS number.
CodeSystem.concept[5].concept[9].code[0]PS-10
CodeSystem.concept[5].concept[9].display[0]Primary Sample - Obtained date
CodeSystem.concept[5].concept[9].definition[0]Date at which a specimen/biopsy was obtained from patient.
CodeSystem.concept[5].concept[10].code[0]PS-11
CodeSystem.concept[5].concept[10].display[0]Primary Sample - Primary sample
CodeSystem.concept[5].concept[10].definition[0]Initial sample from patient submitted into a laboratory.
CodeSystem.concept[5].concept[11].code[0]PS-12
CodeSystem.concept[5].concept[11].display[0]Primary Sample - Primary sample state
CodeSystem.concept[5].concept[11].definition[0]How the primary sample is preserved.
CodeSystem.concept[5].concept[12].code[0]PS-13
CodeSystem.concept[5].concept[12].display[0]Primary Sample - Necrosis
CodeSystem.concept[5].concept[12].definition[0]% necrotic cells in primary sample.
CodeSystem.concept[5].concept[13].code[0]PS-14
CodeSystem.concept[5].concept[13].display[0]Primary Sample - Nucleated cell count
CodeSystem.concept[5].concept[13].definition[0]Nucleated cell count in the primary sample (Solid Tumour and Haem-Onc).
CodeSystem.concept[5].concept[14].code[0]PS-15
CodeSystem.concept[5].concept[14].display[0]Primary Sample - Tumour nuclear content
CodeSystem.concept[5].concept[14].definition[0]Neoplastic cell content in the primary sample(Solid Tumour) - sourced at local lab. (%)
CodeSystem.concept[5].concept[15].code[0]PS-16
CodeSystem.concept[5].concept[15].display[0]Primary Sample - Tumour cellularity
CodeSystem.concept[5].concept[15].definition[0]The proportion of the primary sample which is tumour nuclei.
CodeSystem.concept[5].concept[16].code[0]PS-17
CodeSystem.concept[5].concept[16].display[0]Primary Sample - Solid tumour morphology
CodeSystem.concept[5].concept[16].definition[0]The histology and likely course of development of a tumour.
CodeSystem.concept[5].concept[17].code[0]PS-18
CodeSystem.concept[5].concept[17].display[0]Primary Sample - Solid tumour topography
CodeSystem.concept[5].concept[17].definition[0]The tumour sample site. e.g. from colon, stomach etc.
CodeSystem.concept[5].concept[18].code[0]PS-19
CodeSystem.concept[5].concept[18].display[0]Primary Sample - Biopsy site
CodeSystem.concept[5].concept[18].definition[0]Site where the primary sample was taken from.
CodeSystem.concept[5].concept[19].code[0]PS-20
CodeSystem.concept[5].concept[19].display[0]Primary Sample - Skin/Bone sample affected
CodeSystem.concept[5].concept[19].definition[0]If the skin or bone provided is unaffected or affected.
CodeSystem.concept[5].concept[20].code[0]PS-21
CodeSystem.concept[5].concept[20].display[0]Primary Sample - Maternal cell contamination (MCC)
CodeSystem.concept[5].concept[20].definition[0]Confirmation if MCC remains in the primary sample.
CodeSystem.concept[5].concept[21].code[0]PS-22
CodeSystem.concept[5].concept[21].display[0]Primary Sample - Option for all products of conception
CodeSystem.concept[5].concept[21].definition[0]Future management for products of conception.
CodeSystem.concept[5].concept[22].code[0]PS-23
CodeSystem.concept[5].concept[22].display[0]Primary Sample - Blasts %
CodeSystem.concept[5].concept[22].definition[0]Blast count in the primary sample (Haemonc) - sourced at local SIHMDS.
CodeSystem.concept[5].concept[23].code[0]PS-24
CodeSystem.concept[5].concept[23].display[0]Primary Sample - High infection risk reason
CodeSystem.concept[5].concept[23].definition[0]The high contamination risk reason for a primary sample.
CodeSystem.concept[6].code[0]datagroup-sample-preparation
CodeSystem.concept[6].display[0]Sample Preparation
CodeSystem.concept[6].definition[0]Data group - Sample Preparation
CodeSystem.concept[6].concept[0].code[0]SP-1
CodeSystem.concept[6].concept[0].display[0]Sample Preparation - Parent primary sample id
CodeSystem.concept[6].concept[0].definition[0]Id of primary sample this derived from
CodeSystem.concept[6].concept[1].code[0]SP-2
CodeSystem.concept[6].concept[1].display[0]Sample Preparation - Id (many)
CodeSystem.concept[6].concept[1].definition[0]Id of sample preparation provided, linked to the stated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER).
CodeSystem.concept[6].concept[2].code[0]SP-3
CodeSystem.concept[6].concept[2].display[0]Sample Preparation - Id assigning authority ODS code (many)
CodeSystem.concept[6].concept[2].definition[0]Authority who assigned the sample preparation id(ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY))
CodeSystem.concept[6].concept[3].code[0]SP-4
CodeSystem.concept[6].concept[3].display[0]Sample Preparation - Sample storage details
CodeSystem.concept[6].concept[3].definition[0]Where sample preparation is in storage or where it needs to be stored.
CodeSystem.concept[6].concept[4].code[0]SP-5
CodeSystem.concept[6].concept[4].display[0]Sample Preparation - Volume
CodeSystem.concept[6].concept[4].definition[0]Volume of provided sample preparation.
CodeSystem.concept[6].concept[5].code[0]SP-6
CodeSystem.concept[6].concept[5].display[0]Sample Preparation - Performed date
CodeSystem.concept[6].concept[5].definition[0]Date at which the sample preparation was completed.
CodeSystem.concept[6].concept[6].code[0]SP-7
CodeSystem.concept[6].concept[6].display[0]Sample Preparation - Received date
CodeSystem.concept[6].concept[6].definition[0]Date at which sample preparation was received at a laboratory (SAMPLE RECEIPT DATE).
CodeSystem.concept[6].concept[7].code[0]SP-8
CodeSystem.concept[6].concept[7].display[0]Sample Preparation - Sample preparation
CodeSystem.concept[6].concept[7].definition[0]Cell separation applied to a primary sample.
CodeSystem.concept[7].code[0]datagroup-final-sample
CodeSystem.concept[7].display[0]Final Sample
CodeSystem.concept[7].definition[0]Data group - Final Sample
CodeSystem.concept[7].concept[0].code[0]FS-1
CodeSystem.concept[7].concept[0].display[0]Final Sample - Parent primary sample id
CodeSystem.concept[7].concept[0].definition[0]Id of primary this derived from.
CodeSystem.concept[7].concept[1].code[0]FS-2
CodeSystem.concept[7].concept[1].display[0]Final Sample - Parent sample preparation id
CodeSystem.concept[7].concept[1].definition[0]Id of sample preparation this derived from.
CodeSystem.concept[7].concept[2].code[0]FS-3
CodeSystem.concept[7].concept[2].display[0]Final Sample - Id (many)
CodeSystem.concept[7].concept[2].definition[0]Id of final sample provided, linked to the associated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER).
CodeSystem.concept[7].concept[3].code[0]FS-4
CodeSystem.concept[7].concept[3].display[0]Final Sample - Id assigning authority ODS code (many)
CodeSystem.concept[7].concept[3].definition[0]Authority who assigned the final sample id ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY).
CodeSystem.concept[7].concept[4].code[0]FS-5
CodeSystem.concept[7].concept[4].display[0]Final Sample - Sample storage details
CodeSystem.concept[7].concept[4].definition[0]Where a final sample is in storage or where it needs to be stored.
CodeSystem.concept[7].concept[5].code[0]FS-6
CodeSystem.concept[7].concept[5].display[0]Final Sample - Volume
CodeSystem.concept[7].concept[5].definition[0]Volume of provided final sample.
CodeSystem.concept[7].concept[6].code[0]FS-7
CodeSystem.concept[7].concept[6].display[0]Final Sample - Performed date
CodeSystem.concept[7].concept[6].definition[0]Date at which the final sample was extracted.
CodeSystem.concept[7].concept[7].code[0]FS-8
CodeSystem.concept[7].concept[7].display[0]Final Sample - Received date
CodeSystem.concept[7].concept[7].definition[0]Date at which a final sample was received at a laboratory (SAMPLE RECEIPT DATE).
CodeSystem.concept[7].concept[8].code[0]FS-9
CodeSystem.concept[7].concept[8].display[0]Final Sample - Final sample
CodeSystem.concept[7].concept[8].definition[0]Material to be genomically tested.
CodeSystem.concept[8].code[0]datagroup-previous-genomic-report
CodeSystem.concept[8].display[0]Previous Genomic Report
CodeSystem.concept[8].definition[0]Data group - Previous Genomic Report
CodeSystem.concept[8].concept[0].code[0]PGR-1
CodeSystem.concept[8].concept[0].display[0]Previous Genomic Report - Report referral summary
CodeSystem.concept[8].concept[0].definition[0]Referring clinician's summary of the previous genomic report to support test request.
CodeSystem.concept[8].concept[1].code[0]PGR-2
CodeSystem.concept[8].concept[1].display[0]Previous Genomic Report - Report file/link
CodeSystem.concept[8].concept[1].definition[0]A copy of/or link to the previous genomic report.
CodeSystem.concept[8].concept[2].code[0]PGR-3
CodeSystem.concept[8].concept[2].display[0]Previous Genomic Report - Test performed date
CodeSystem.concept[8].concept[2].definition[0]The date a previous genomic test was performed.
CodeSystem.concept[8].concept[3].code[0]PGR-4
CodeSystem.concept[8].concept[3].display[0]Previous Genomic Report - Report identifier
CodeSystem.concept[8].concept[3].definition[0]The identifier for the previous genomic report.
CodeSystem.concept[8].concept[4].code[0]PGR-5
CodeSystem.concept[8].concept[4].display[0]Previous Genomic Report - Patient's first name
CodeSystem.concept[8].concept[4].definition[0]The first name of the patient on the previous genomic report.
CodeSystem.concept[8].concept[5].code[0]PGR-6
CodeSystem.concept[8].concept[5].display[0]Previous Genomic Report - Patient's surname
CodeSystem.concept[8].concept[5].definition[0]The surname of the patient on the previous genomic report.
CodeSystem.concept[8].concept[6].code[0]PGR-7
CodeSystem.concept[8].concept[6].display[0]Previous Genomic Report - Patient's address
CodeSystem.concept[8].concept[6].definition[0]The address of the patient on the previous genomic report.
CodeSystem.concept[8].concept[7].code[0]PGR-8
CodeSystem.concept[8].concept[7].display[0]Previous Genomic Report - Patient's post code
CodeSystem.concept[8].concept[7].definition[0]The postcode of the patient on the previous genomic report.
CodeSystem.concept[8].concept[8].code[0]PGR-9
CodeSystem.concept[8].concept[8].display[0]Previous Genomic Report - Patient's country
CodeSystem.concept[8].concept[8].definition[0]The country of the patient on the previous genomic report.
CodeSystem.concept[8].concept[9].code[0]PGR-10
CodeSystem.concept[8].concept[9].display[0]Previous Genomic Report - Patient's date of birth
CodeSystem.concept[8].concept[9].definition[0]The date of birth of the patient on the previous genomic report.
CodeSystem.concept[8].concept[10].code[0]PGR-11
CodeSystem.concept[8].concept[10].display[0]Previous Genomic Report - Patient's NHS number
CodeSystem.concept[8].concept[10].definition[0]The NHS number of the patient on the previous genomic report.
CodeSystem.concept[8].concept[11].code[0]PGR-12
CodeSystem.concept[8].concept[11].display[0]Previous Genomic Report - Patient's alternative identifier
CodeSystem.concept[8].concept[11].definition[0]The alternative identifier of the patient on the previous genomic report.
CodeSystem.concept[8].concept[12].code[0]PGR-13
CodeSystem.concept[8].concept[12].display[0]Previous Genomic Report - Patient's relationship to requesting patient
CodeSystem.concept[8].concept[12].definition[0]The relationship of the patient on the previous genomic report to the requesting patient.
CodeSystem.concept[8].concept[13].code[0]PGR-14
CodeSystem.concept[8].concept[13].display[0]Previous Genomic Report - Patient's clinical genetic number
CodeSystem.concept[8].concept[13].definition[0]The individual clinical genetic number of the patient on the previous genomic report.
CodeSystem.concept[8].concept[14].code[0]PGR-15
CodeSystem.concept[8].concept[14].display[0]Previous Genomic Report - Patient's pedigree number
CodeSystem.concept[8].concept[14].definition[0]The pedigree number of the patient on the previous genomic report which links their family.
CodeSystem.concept[8].concept[15].code[0]PGR-16
CodeSystem.concept[8].concept[15].display[0]Previous Genomic Report - Report lab test number
CodeSystem.concept[8].concept[15].definition[0]The lab test number from the previous genomic report.
CodeSystem.concept[8].concept[16].code[0]PGR-17
CodeSystem.concept[8].concept[16].display[0]Previous Genomic Report - Report of genetic analysis
CodeSystem.concept[8].concept[16].definition[0]The clinical outcomes from the previous genomic report.
CodeSystem.concept[8].concept[17].code[0]PGR-18
CodeSystem.concept[8].concept[17].display[0]Previous Genomic Report - Report performer full name
CodeSystem.concept[8].concept[17].definition[0]The full name of the individual that authored the previous genomic test report.
CodeSystem.concept[8].concept[18].code[0]PGR-19
CodeSystem.concept[8].concept[18].display[0]Previous Genomic Report - Report performer organisation ODS code
CodeSystem.concept[8].concept[18].definition[0]The organisation ODS code of the individual that authored the previous genomic test report.
CodeSystem.concept[8].concept[19].code[0]PGR-20
CodeSystem.concept[8].concept[19].display[0]Previous Genomic Report - Original requester full name
CodeSystem.concept[8].concept[19].definition[0]The full name of the individual that requested the previous genomic test report.
CodeSystem.concept[8].concept[20].code[0]PGR-21
CodeSystem.concept[8].concept[20].display[0]Previous Genomic Report - Original requester organisation ODS code
CodeSystem.concept[8].concept[20].definition[0]The organisation ODS code of the individual that requested the previous genomic test report.
CodeSystem.concept[8].concept[21].code[0]PGR-22
CodeSystem.concept[8].concept[21].display[0]Previous Genomic Report - Original requester reason for request
CodeSystem.concept[8].concept[21].definition[0]The reason for requesting the previous genomic test report.
CodeSystem.concept[9].code[0]datagroup-relevant-clinical-report
CodeSystem.concept[9].display[0]Relevant Clinical Report
CodeSystem.concept[9].definition[0]Data group - Relevant Clinical Report
CodeSystem.concept[9].concept[0].code[0]RCP-1
CodeSystem.concept[9].concept[0].display[0]Relevant Clinical Report - Report title
CodeSystem.concept[9].concept[0].definition[0]Title of relevant clinical report.
CodeSystem.concept[9].concept[1].code[0]RCP-2
CodeSystem.concept[9].concept[1].display[0]Relevant Clinical Report - Report referral summary
CodeSystem.concept[9].concept[1].definition[0]Referring clinician's summary of the previous relevant clinical report to support test request.
CodeSystem.concept[9].concept[2].code[0]RCP-3
CodeSystem.concept[9].concept[2].display[0]Relevant Clinical Report - Report file/link
CodeSystem.concept[9].concept[2].definition[0]A copy of/or link to the relevant clinical report.
CodeSystem.concept[9].concept[3].code[0]RCP-4
CodeSystem.concept[9].concept[3].display[0]Relevant Clinical Report - Test performed date
CodeSystem.concept[9].concept[3].definition[0]The date a relevant clinical report was performed.
CodeSystem.concept[9].concept[4].code[0]RCP-5
CodeSystem.concept[9].concept[4].display[0]Relevant Clinical Report - Report identifier
CodeSystem.concept[9].concept[4].definition[0]The identifier for the relevant clinical report.
CodeSystem.concept[9].concept[5].code[0]RCP-6
CodeSystem.concept[9].concept[5].display[0]Relevant Clinical Report - Test type
CodeSystem.concept[9].concept[5].definition[0]A name that describes the relevant clinical report.
CodeSystem.concept[9].concept[6].code[0]RCP-7
CodeSystem.concept[9].concept[6].display[0]Relevant Clinical Report - Test result value comparator
CodeSystem.concept[9].concept[6].definition[0]A comparator that may be used to indicate whether the actual value is greater or less than the stated value. Applies to numeric values only.
CodeSystem.concept[9].concept[7].code[0]RCP-8
CodeSystem.concept[9].concept[7].display[0]Relevant Clinical Report - Test result value unit of measure
CodeSystem.concept[9].concept[7].definition[0]The name and code of the unit of measure associated with the test result value. Applies to numeric values only.
CodeSystem.concept[9].concept[8].code[0]RCP-9
CodeSystem.concept[9].concept[8].display[0]Relevant Clinical Report - Test result reference range low
CodeSystem.concept[9].concept[8].definition[0]The reference range low value.
CodeSystem.concept[9].concept[9].code[0]RCP-10
CodeSystem.concept[9].concept[9].display[0]Relevant Clinical Report - Test result reference range high
CodeSystem.concept[9].concept[9].definition[0]The reference range high value.
CodeSystem.concept[9].concept[10].code[0]RCP-11
CodeSystem.concept[9].concept[10].display[0]Relevant Clinical Report - Test result test method
CodeSystem.concept[9].concept[10].definition[0]The method of testing/observation that was used.
CodeSystem.concept[9].concept[11].code[0]RCP-12
CodeSystem.concept[9].concept[11].display[0]Relevant Clinical Report - Test result reference range text
CodeSystem.concept[9].concept[11].definition[0]A human readable text-based description to provide additional information about the reference range. For example, the target population that the reference range applies to and/or differences based on factors such as age or sex.
CodeSystem.concept[9].concept[12].code[0]RCP-13
CodeSystem.concept[9].concept[12].display[0]Relevant Clinical Report - Test result clinical summary
CodeSystem.concept[9].concept[12].definition[0]A human readable text-based clinical interpretation of the test result and any additional notes provided by the performing organisation.
CodeSystem.concept[9].concept[13].code[0]RCP-14
CodeSystem.concept[9].concept[13].display[0]Relevant Clinical Report - Report result
CodeSystem.concept[9].concept[13].definition[0]Reference to the result(s)/result groups contained in the relevant clinical report
CodeSystem.concept[9].concept[14].code[0]RCP-15
CodeSystem.concept[9].concept[14].display[0]Relevant Clinical Report - Report performer full name
CodeSystem.concept[9].concept[14].definition[0]The full name of the individual that authored the relevant clinical report.
CodeSystem.concept[9].concept[15].code[0]RCP-16
CodeSystem.concept[9].concept[15].display[0]Relevant Clinical Report - Report performer organisation ODS code
CodeSystem.concept[9].concept[15].definition[0]The identifier of the org which authored the patient's relevant clinical report.
CodeSystem.concept[9].concept[16].code[0]RCP-17
CodeSystem.concept[9].concept[16].display[0]Relevant Clinical Report - Original requester full name
CodeSystem.concept[9].concept[16].definition[0]The full name of the individual that requested the relevant clinical report.
CodeSystem.concept[9].concept[17].code[0]RCP-18
CodeSystem.concept[9].concept[17].display[0]Relevant Clinical Report - Original requester organisation ODS code
CodeSystem.concept[9].concept[17].definition[0]The organisation ODS code of the individual that requested the relevant clinical report.
CodeSystem.concept[9].concept[18].code[0]RCP-19
CodeSystem.concept[9].concept[18].display[0]Relevant Clinical Report - Original requester reason for request
CodeSystem.concept[9].concept[18].definition[0]The reason for requesting the relevant clinical report.
CodeSystem.concept[10].code[0]datagroup-patient-clinical-information
CodeSystem.concept[10].display[0]Patient Clinical Information
CodeSystem.concept[10].definition[0]Data group - Patient Clinical Information
CodeSystem.concept[10].concept[0].code[0]PCI-1
CodeSystem.concept[10].concept[0].display[0]Genomic Ethnicity
CodeSystem.concept[10].concept[0].definition[0]Patient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish
CodeSystem.concept[10].concept[1].code[0]PCI-2
CodeSystem.concept[10].concept[1].display[0]Disease Status
CodeSystem.concept[10].concept[1].definition[0]If the patient is affected, unaffected, or it is unknown.
CodeSystem.concept[10].concept[2].code[0]PCI-3
CodeSystem.concept[10].concept[2].display[0]Date of Diagnosis
CodeSystem.concept[10].concept[2].definition[0]The patient's date of diagnosis.
CodeSystem.concept[10].concept[3].code[0]PCI-4
CodeSystem.concept[10].concept[3].display[0]Age at disease onset
CodeSystem.concept[10].concept[3].definition[0]The age when a change in patients' health was first noted in line with suspected diagnosis.
CodeSystem.concept[10].concept[4].code[0]PCI-5
CodeSystem.concept[10].concept[4].display[0]Known/Suspected Disease
CodeSystem.concept[10].concept[4].definition[0]Disease a patient is believed, known to have, or be at risk of developing.
CodeSystem.concept[10].concept[5].code[0]PCI-6
CodeSystem.concept[10].concept[5].display[0]Phenotypic details (many)
CodeSystem.concept[10].concept[5].definition[0]The HPO (or alternative ontology as appropriate) term names for the observable disease traits.
CodeSystem.concept[10].concept[6].code[0]PCI-7
CodeSystem.concept[10].concept[6].display[0]Symptoms at onset
CodeSystem.concept[10].concept[6].definition[0]The patient's symptoms at onset.
CodeSystem.concept[10].concept[7].code[0]PCI-8
CodeSystem.concept[10].concept[7].display[0]Disease penetrance
CodeSystem.concept[10].concept[7].definition[0]Confirms if all individuals with a disease show clinical symptoms or if there are carriers who do not.
CodeSystem.concept[10].concept[8].code[0]PCI-9
CodeSystem.concept[10].concept[8].display[0]Has multiple tumours
CodeSystem.concept[10].concept[8].definition[0]Does the patient have multiple tumours.
CodeSystem.concept[10].concept[9].code[0]PCI-10
CodeSystem.concept[10].concept[9].display[0]Count of tumours
CodeSystem.concept[10].concept[9].definition[0]How many tumours the patient has.
CodeSystem.concept[10].concept[10].code[0]PCI-11
CodeSystem.concept[10].concept[10].display[0]Site of tumour (many)
CodeSystem.concept[10].concept[10].definition[0]Location of the tumours on the body.
CodeSystem.concept[10].concept[11].code[0]PCI-12
CodeSystem.concept[10].concept[11].display[0]Solid Tumour Type
CodeSystem.concept[10].concept[11].definition[0]The patient's solid tumour type.
CodeSystem.concept[10].concept[12].code[0]PCI-13
CodeSystem.concept[10].concept[12].display[0]Liquid Tumour Type
CodeSystem.concept[10].concept[12].definition[0]The patient's liquid tumour type.
CodeSystem.concept[10].concept[13].code[0]PCI-14
CodeSystem.concept[10].concept[13].display[0]Tumour sites - Body image diagram
CodeSystem.concept[10].concept[13].definition[0]Image attachment of body with tumour sites highlighted.
CodeSystem.concept[10].concept[14].code[0]PCI-15
CodeSystem.concept[10].concept[14].display[0]Pedigree details / Relevant family history
CodeSystem.concept[10].concept[14].definition[0]The patient's pedigree/family history details (inc family history of cancer).
CodeSystem.concept[10].concept[15].code[0]PCI-16
CodeSystem.concept[10].concept[15].display[0]Pedigree diagram
CodeSystem.concept[10].concept[15].definition[0]Image attachment of pedigree details
CodeSystem.concept[10].concept[16].code[0]PCI-17
CodeSystem.concept[10].concept[16].display[0]Laterality of hearing loss
CodeSystem.concept[10].concept[16].definition[0]Laterality of the hearing loss i.e. bilateral or unilateral.
CodeSystem.concept[10].concept[17].code[0]PCI-18
CodeSystem.concept[10].concept[17].display[0]Fetal maternal screening genotype
CodeSystem.concept[10].concept[17].definition[0]Maternal screening genotype for haemoglobinopathy testing.
CodeSystem.concept[10].concept[18].code[0]PCI-19
CodeSystem.concept[10].concept[18].display[0]Is patient on TKI therapy
CodeSystem.concept[10].concept[18].definition[0]If the patient is on tyrosine kinase inhibitor therapy.
CodeSystem.concept[10].concept[19].code[0]PCI-20
CodeSystem.concept[10].concept[19].display[0]Is patient in treatment free remission
CodeSystem.concept[10].concept[19].definition[0]If the patient is in treatment free remission.
CodeSystem.concept[10].concept[20].code[0]PCI-21
CodeSystem.concept[10].concept[20].display[0]Legal considerations
CodeSystem.concept[10].concept[20].definition[0]Legal considerations for a given request.
CodeSystem.concept[10].concept[21].code[0]PCI-22
CodeSystem.concept[10].concept[21].display[0]Fetal paternal screening genotype
CodeSystem.concept[10].concept[21].definition[0]Paternal screening genotype for haemoglobinopathy testing.
CodeSystem.concept[10].concept[22].code[0]PCI-23
CodeSystem.concept[10].concept[22].display[0]Expected Maternity Unit - Organisation name
CodeSystem.concept[10].concept[22].definition[0]Requesting clinician's organisation name.
CodeSystem.concept[10].concept[23].code[0]PCI-24
CodeSystem.concept[10].concept[23].display[0]Expected Maternity Unit - Organisation address
CodeSystem.concept[10].concept[23].definition[0]Requesting clinician's organisation address.
CodeSystem.concept[10].concept[24].code[0]PCI-25
CodeSystem.concept[10].concept[24].display[0]Expected Maternity Unit - Organisation ODS code
CodeSystem.concept[10].concept[24].definition[0]Requesting clinician's organisation ODS code.
CodeSystem.concept[10].concept[25].code[0]PCI-26
CodeSystem.concept[10].concept[25].display[0]Expected Maternity Unit - Department name
CodeSystem.concept[10].concept[25].definition[0]Requesting clinician's department name.
CodeSystem.concept[10].concept[26].code[0]PCI-27
CodeSystem.concept[10].concept[26].display[0]Growth history
CodeSystem.concept[10].concept[26].definition[0]Summary passage of text to highlight patient centile history e.g. head circumference, weight, etc.
CodeSystem.concept[10].concept[27].code[0]PCI-28
CodeSystem.concept[10].concept[27].display[0]Severity of hearing loss
CodeSystem.concept[10].concept[27].definition[0]Free text regarding hearing loss
CodeSystem.concept[10].concept[28].code[0]PCI-29
CodeSystem.concept[10].concept[28].display[0]Retinal degeneration
CodeSystem.concept[10].concept[28].definition[0]Free text regarding retinal degeneration
CodeSystem.concept[10].concept[29].code[0]PCI-30
CodeSystem.concept[10].concept[29].display[0]Risk factors
CodeSystem.concept[10].concept[29].definition[0]Toxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication.
CodeSystem.concept[10].concept[30].code[0]PCI-31
CodeSystem.concept[10].concept[30].display[0]Suspected inborn error type(s)
CodeSystem.concept[10].concept[30].definition[0]Suspected inborn error type(s)
CodeSystem.concept[10].concept[31].code[0]PCI-32
CodeSystem.concept[10].concept[31].display[0]Abnormal infection history site
CodeSystem.concept[10].concept[31].definition[0]Abnormal infection history site organism
CodeSystem.concept[10].concept[32].code[0]PCI-33
CodeSystem.concept[10].concept[32].display[0]Abnormal infection history site organism
CodeSystem.concept[10].concept[32].definition[0]Abnormal infection history site organism
CodeSystem.concept[10].concept[33].code[0]PCI-34
CodeSystem.concept[10].concept[33].display[0]Is on ig replacement
CodeSystem.concept[10].concept[33].definition[0]If the patient is on immunoglobin replacement treatment.
CodeSystem.concept[11].code[0]further-supporting-information
CodeSystem.concept[11].display[0]Further Supporting Information
CodeSystem.concept[11].definition[0]Data group - Further Supporting Information
CodeSystem.concept[11].concept[0].code[0]FSI-1
CodeSystem.concept[11].concept[0].display[0]Further Supporting Information
CodeSystem.concept[11].concept[0].definition[0]Supporting information which has not been captured elsewhere.

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="mds-questiontag-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics" />
<version value="0.1.0" />
<name value="MDSQuestionTagGenomics" />
<title value="MDS Question Tag Genomics" />
<status value="draft" />
<date value="2025-07-29T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag." />
<copyright value="Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<hierarchyMeaning value="grouped-by" />
<content value="complete" />
<concept>
<code value="datagroup-healthcare-professional" />
<display value="Healthcare Professional" />
<definition value="Data group - Healthcare professional" />
<concept>
<code value="HCP-1" />
<display value="HCP - Genomic test order role" />
<definition value="HCP's function within the genomic test ordering process" />
</concept>
<concept>
<code value="HCP-2" />
<display value="HCP - Full name" />
<definition value="HCP's full name." />
</concept>
<concept>
<code value="HCP-3" />
<display value="HCP - Job title" />
<definition value="HCP's job title." />
</concept>
<concept>
<code value="HCP-4" />
<display value="HCP - Current specialty" />
<definition value="HCP's current specialty." />
</concept>
<concept>
<code value="HCP-5" />
<display value="HCP - Phone" />
<definition value="HCP's phone number." />
</concept>
<concept>
<code value="HCP-6" />
<display value="HCP - Email address" />
<definition value="HCP's email address." />
</concept>
<concept>
<code value="HCP-7" />
<display value="HCP - Organisation name" />
<definition value="HCP's organisation name." />
</concept>
<concept>
<code value="HCP-8" />
<display value="HCP - Organisation address" />
<definition value="HCP's organisation address." />
</concept>
<concept>
<code value="HCP-9" />
<display value="HCP - Organisation ODS code" />
<definition value="HCP's organisation ODS code (ORGANISATION IDENTIFIER (CODE OF ORDERING ENTITY))" />
</concept>
<concept>
<code value="HCP-10" />
<display value="HCP - Department name" />
<definition value="HCP's department name." />
</concept>
<concept>
<code value="HCP-11" />
<display value="HCP - Professional registration number" />
<definition value="HCP's professional registration number such as their GMC number." />
</concept>
<concept>
<code value="HCP-12" />
<display value="HCP - Professional registration number type" />
<definition value="HCP's professional registration number type such as 'GMC'." />
</concept>
<concept>
<code value="HCP-13" />
<display value="HCP - Genomic report delivery method" />
<definition value="HCP's report preferred delivery method." />
</concept>
<concept>
<code value="HCP-14" />
<display value="HCP - Central email for address and reporting (many)" />
<definition value="Central email address provided by a HCP." />
</concept>
</concept>
<concept>
<code value="datagroup-patient" />
<display value="Patient" />
<definition value="Data group - Patient" />
<concept>
<code value="P-1" />
<display value="Patient - Title" />
<definition value="Patient's title." />
</concept>
<concept>
<code value="P-2" />
<display value="Patient - First name" />
<definition value="Patient's first name." />
</concept>
<concept>
<code value="P-3" />
<display value="Patient - Surname" />
<definition value="Patient's last name." />
</concept>
<concept>
<code value="P-4" />
<display value="Patient - Date of birth" />
<definition value="Patient's date of birth." />
</concept>
<concept>
<code value="P-5" />
<display value="Patient - Address" />
<definition value="Patient's home address." />
</concept>
<concept>
<code value="P-6" />
<display value="Patient - Postcode" />
<definition value="Patient's home postcode." />
</concept>
<concept>
<code value="P-7" />
<display value="Patient - Country" />
<definition value="Patient's home country." />
</concept>
<concept>
<code value="P-8" />
<display value="Patient - Life status at time of request" />
<definition value="Patient's alive or deceased status when ordering the test." />
</concept>
<concept>
<code value="P-9" />
<display value="Patient - Ethnicity" />
<definition value="Patient's ethnicity. Includes 'other' / 'not stated'." />
</concept>
<concept>
<code value="P-10" />
<display value="Patient - Sex registered at birth" />
<definition value="Patient's phenotypic sex classification. Physical characteristic. Currently determined by the Dr at birth. Gender for PLCM." />
</concept>
<concept>
<code value="P-11" />
<display value="Patient - Organisation responsible for GP practice ODS code" />
<definition value="ODS code of organisation responsible for the GP Practice where the patient is registered." />
</concept>
<concept>
<code value="P-12" />
<display value="Patient - GP practice's ODS Code" />
<definition value="Patient's GP practice ODS code. Includes 'N/A' and 'Not Known'." />
</concept>
<concept>
<code value="P-13" />
<display value="Patient - Is from consanguineous union" />
<definition value="The fact of the patient's biological parents being descended from the same ancestor." />
</concept>
<concept>
<code value="P-14" />
<display value="Patient - GP's full name" />
<definition value="Patient's GP's full name." />
</concept>
<concept>
<code value="P-15" />
<display value="Patient - NHS number" />
<definition value="Patient's NHS number." />
</concept>
<concept>
<code value="P-16" />
<display value="Patient - Local identifier" />
<definition value="Patient's identification code other than NHS number. (LOCAL PATIENT IDENTIFIER (EXTENDED))" />
</concept>
<concept>
<code value="P-17" />
<display value="Patient - Reason for unavailable NHS number" />
<definition value="Reason for an NHS number not being provided." />
</concept>
<concept>
<code value="P-18" />
<display value="Patient - Relationship to proband" />
<definition value="This patient's relationship to the primary patient." />
</concept>
<concept>
<code value="P-19" />
<display value="Patient - Gender Identity" />
<definition value="Patient's stated gender, determined by the patient." />
</concept>
<concept>
<code value="P-20" />
<display value="Patient - Date of death" />
<definition value="Patient's date/time of death." />
</concept>
<concept>
<code value="P-21" />
<display value="Patient - Chromosomal sex" />
<definition value="Patient's genomic / karyotypic characteristic. Determined by genomic testing." />
</concept>
<concept>
<code value="P-22" />
<display value="Patient - Pregnancy gestation period" />
<definition value="Patient's term of active pregnancy at point of test request." />
</concept>
<concept>
<code value="P-23" />
<display value="Patient - Fetal gestation" />
<definition value="Stage during patient pregnancy at which it terminated." />
</concept>
<concept>
<code value="P-24" />
<display value="Patient - Estimated delivery date (EDD)" />
<definition value="Patient's estimated delivery date." />
</concept>
<concept>
<code value="P-25" />
<display value="Patient - Pregnancy type" />
<definition value="Type of conception" />
</concept>
<concept>
<code value="P-26" />
<display value="Patient - IVF age of egg donor" />
<definition value="The age of the patient who donated the egg at the time of donation." />
</concept>
<concept>
<code value="P-27" />
<display value="Patient - Diagnosed with or being treated for cancer" />
<definition value="Has the patient been diagnosed with or are they being treated for cancer." />
</concept>
<concept>
<code value="P-28" />
<display value="Patient - Had transplant" />
<definition value="Has the patient ever had a transplant." />
</concept>
<concept>
<code value="P-29" />
<display value="Patient - Type of transplant" />
<definition value="What type of transplant the patient had." />
</concept>
<concept>
<code value="P-30" />
<display value="Patient - Transplant date" />
<definition value="When the patient had the transplant." />
</concept>
<concept>
<code value="P-31" />
<display value="Patient - Had transfusion in the last 6 weeks" />
<definition value="Has the patient had a transfusion in the last 6 weeks." />
</concept>
<concept>
<code value="P-32" />
<display value="Patient - Type of transfusion" />
<definition value="What type of transfusion the patient has had." />
</concept>
<concept>
<code value="P-33" />
<display value="Patient - Transfusion date" />
<definition value="When the patient had the transfusion." />
</concept>
<concept>
<code value="P-34" />
<display value="Patient - Height (m)" />
<definition value="Patient's height." />
</concept>
<concept>
<code value="P-35" />
<display value="Patient - Withheld identity reason" />
<definition value="Confirmation why the patient is withholding identity details." />
</concept>
<concept>
<code value="P-36" />
<display value="Patient - GP's professional registration number" />
<definition value="Patient's GP's professional registration number." />
</concept>
<concept>
<code value="P-37" />
<display value="Patient - Pedigree / Family identifier" />
<definition value="Patient's pedigree or family identifying id." />
</concept>
<concept>
<code value="P-38" />
<display value="Patient - Pregnancy status" />
<definition value="Patient's pregnancy status." />
</concept>
</concept>
<concept>
<code value="datagroup-fetus" />
<display value="Fetus" />
<definition value="Data group - Fetus" />
<concept>
<code value="F-1" />
<display value="Fetus - Local identifier" />
<definition value="Fetus' identification code other than NHS number." />
</concept>
<concept>
<code value="F-2" />
<display value="Fetus - Observed sex" />
<definition value="Fetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM." />
</concept>
<concept>
<code value="F-3" />
<display value="Fetus - Chromosomal sex" />
<definition value="Fetus' genomic / karyotypic characteristic. Determined by genomic testing." />
</concept>
<concept>
<code value="F-4" />
<display value="Fetus - Are multiple fetuses being tested" />
<definition value="Confirmation that multiple fetuses are being tested." />
</concept>
<concept>
<code value="F-5" />
<display value="Fetus - Is testing for fetal loss from 24 weeks of gestation" />
<definition value="Confirmation that the test is for a loss of pregnancy after 24 weeks gestation." />
</concept>
<concept>
<code value="F-6" />
<display value="Fetus - Life status at time of request" />
<definition value="Fetus' alive or deceased status details at the point of test ordering." />
</concept>
</concept>
<concept>
<code value="datagroup-record-of-discussion" />
<display value="Record of Discussion" />
<definition value="Data group - Record of discussion" />
<concept>
<code value="ROD-1" />
<display value="RoD - Included" />
<definition value="Has RoD been included with request." />
</concept>
<concept>
<code value="ROD-2" />
<display value="RoD - Patient category" />
<definition value="Confirmation of who made the RoD decisions." />
</concept>
<concept>
<code value="ROD-3" />
<display value="RoD - Recording clinician name" />
<definition value="Name of the clinician who recorded the RoD details." />
</concept>
<concept>
<code value="ROD-4" />
<display value="RoD - Record of discussion form - copy attached" />
<definition value="Marker to confirm on a test request form that an RoD has been included." />
</concept>
<concept>
<code value="ROD-5" />
<display value="RoD - Patient choice status" />
<definition value="Indication of the patient consenting to the genomic test request." />
</concept>
<concept>
<code value="ROD-6" />
<display value="RoD - Has research participation been discussed" />
<definition value="Marker to confirm RoD conversation has taken place." />
</concept>
<concept>
<code value="ROD-7" />
<display value="RoD - Remote consent" />
<definition value="Where consent has been recorded on behalf of the patient via remote confirmation." />
</concept>
<concept>
<code value="ROD-8" />
<display value="RoD - Test type" />
<definition value="If the test is WGS cancer or WGS rare disease." />
</concept>
<concept>
<code value="ROD-9" />
<display value="RoD - Research opt out reason" />
<definition value="Why patient has opted out of research." />
</concept>
<concept>
<code value="ROD-10" />
<display value="RoD - Responsible clinician name" />
<definition value="Name of the clinician who is responsible for the patient's genomic test request." />
</concept>
<concept>
<code value="ROD-11" />
<display value="RoD - Patient conversation taken place, ROD form to follow" />
<definition value="Marker to confirm RoD conversation has taken place but will be sent separately." />
</concept>
<concept>
<code value="ROD-12" />
<display value="RoD - Signature" />
<definition value="Copy of wet signature or valid e-signature." />
</concept>
<concept>
<code value="ROD-13" />
<display value="RoD - Document/Link" />
<definition value="A copy of/or link to the previous genomic or non-genomic report." />
</concept>
</concept>
<concept>
<code value="datagroup-test-request" />
<display value="Test Request" />
<definition value="Data group - Test Request" />
<concept>
<code value="TR-1" />
<display value="Test Request - Test request id" />
<definition value="Unique id to identify this test request." />
</concept>
<concept>
<code value="TR-2" />
<display value="Test Request - Payment status" />
<definition value="How the test request is funded" />
</concept>
<concept>
<code value="TR-3" />
<display value="Test Request - Date and time request sent" />
<definition value="Date and time the test request was sent from the requesting clinician (TEST REQUEST DATE)." />
</concept>
<concept>
<code value="TR-4" />
<display value="Test Request - Reason for testing" />
<definition value="The reason for a genomic test." />
</concept>
<concept>
<code value="TR-5" />
<display value="Test Request - High level test identifier" />
<definition value="The high level id which identifies the requested test. Options provided by Test Directory." />
</concept>
<concept>
<code value="TR-6" />
<display value="Test Request - High level test identifier description" />
<definition value="The high level name of the CI referred to." />
</concept>
<concept>
<code value="TR-7" />
<display value="Test Request - Low level test identifier" />
<definition value="The low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE)." />
</concept>
<concept>
<code value="TR-8" />
<display value="Test Request - Low level test identifier description" />
<definition value="The low level CITT name of the considered test." />
</concept>
<concept>
<code value="TR-9" />
<display value="Test Request - Low level multipurpose test identifier" />
<definition value="The low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION)." />
</concept>
<concept>
<code value="TR-10" />
<display value="Test Request - Low level multipurpose test identifier description" />
<definition value="The low level name of the test to be actioned when the CITT code is multipurpose." />
</concept>
<concept>
<code value="TR-11" />
<display value="Test Request - Count of patients to be tested" />
<definition value="Count of patients to be tested including the proband/primary patient." />
</concept>
<concept>
<code value="TR-12" />
<display value="Test Request - Urgency reason" />
<definition value="The test request urgency reason." />
</concept>
<concept>
<code value="TR-13" />
<display value="Test Request - Reason for reanalysis" />
<definition value="The reason reanalysis has been requested." />
</concept>
<concept>
<code value="TR-14" />
<display value="Test Request - Detail of reason for reanalysis" />
<definition value="Further detail associated to the reason reanalysis has been requested." />
</concept>
<concept>
<code value="TR-15" />
<display value="Test Request - Type of reanalysis" />
<definition value="The type of reanalysis which has been requested." />
</concept>
<concept>
<code value="TR-16" />
<display value="Test Request - DNA storage information" />
<definition value="If the reason for testing is DNA storage, this captures further detail." />
</concept>
<concept>
<code value="TR-17" />
<display value="Test Request - Is urgent" />
<definition value="Confirmation if the test request is urgent." />
</concept>
<concept>
<code value="TR-18" />
<display value="Test Request - Date report required by" />
<definition value="The date a completed genomic report is required by." />
</concept>
<concept>
<code value="TR-19" />
<display value="Test Request - Recipient ODS code" />
<definition value="ODS code of the first organisation which receives the genomic test request." />
</concept>
</concept>
<concept>
<code value="datagroup-primary-sample" />
<display value="Primary Sample" />
<definition value="Data group - Primary Sample" />
<concept>
<code value="PS-1" />
<display value="Primary Sample - Destination organisation ODS code" />
<definition value="Destination for primary sample." />
</concept>
<concept>
<code value="PS-2" />
<display value="Primary Sample - Id (many)" />
<definition value="Id of primary sample provided, linked to the stated assigning authority." />
</concept>
<concept>
<code value="PS-3" />
<display value="Primary Sample - Id assigning authority ODS code (many)" />
<definition value="Authority who assigned the primary sample id." />
</concept>
<concept>
<code value="PS-4" />
<display value="Primary Sample - Received date" />
<definition value="Date at which a primary sample was received at a laboratory (SAMPLE RECEIPT DATE)." />
</concept>
<concept>
<code value="PS-5" />
<display value="Primary Sample - Sample storage details" />
<definition value="Where a primary sample is in storage or where it needs to be stored." />
</concept>
<concept>
<code value="PS-6" />
<display value="Primary Sample - Volume" />
<definition value="Volume of provided primary sample." />
</concept>
<concept>
<code value="PS-7" />
<display value="Primary Sample - Test request Id" />
<definition value="The id of the associated genomic test being requested." />
</concept>
<concept>
<code value="PS-8" />
<display value="Primary Sample - Patient NHS number" />
<definition value="Patient NHS number." />
</concept>
<concept>
<code value="PS-9" />
<display value="Primary Sample - Patient local identifier" />
<definition value="Patient identification code other than NHS number." />
</concept>
<concept>
<code value="PS-10" />
<display value="Primary Sample - Obtained date" />
<definition value="Date at which a specimen/biopsy was obtained from patient." />
</concept>
<concept>
<code value="PS-11" />
<display value="Primary Sample - Primary sample" />
<definition value="Initial sample from patient submitted into a laboratory." />
</concept>
<concept>
<code value="PS-12" />
<display value="Primary Sample - Primary sample state" />
<definition value="How the primary sample is preserved." />
</concept>
<concept>
<code value="PS-13" />
<display value="Primary Sample - Necrosis" />
<definition value="% necrotic cells in primary sample." />
</concept>
<concept>
<code value="PS-14" />
<display value="Primary Sample - Nucleated cell count" />
<definition value="Nucleated cell count in the primary sample (Solid Tumour and Haem-Onc)." />
</concept>
<concept>
<code value="PS-15" />
<display value="Primary Sample - Tumour nuclear content" />
<definition value="Neoplastic cell content in the primary sample(Solid Tumour) - sourced at local lab. (%)" />
</concept>
<concept>
<code value="PS-16" />
<display value="Primary Sample - Tumour cellularity" />
<definition value="The proportion of the primary sample which is tumour nuclei." />
</concept>
<concept>
<code value="PS-17" />
<display value="Primary Sample - Solid tumour morphology" />
<definition value="The histology and likely course of development of a tumour." />
</concept>
<concept>
<code value="PS-18" />
<display value="Primary Sample - Solid tumour topography" />
<definition value="The tumour sample site. e.g. from colon, stomach etc." />
</concept>
<concept>
<code value="PS-19" />
<display value="Primary Sample - Biopsy site" />
<definition value="Site where the primary sample was taken from." />
</concept>
<concept>
<code value="PS-20" />
<display value="Primary Sample - Skin/Bone sample affected" />
<definition value="If the skin or bone provided is unaffected or affected." />
</concept>
<concept>
<code value="PS-21" />
<display value="Primary Sample - Maternal cell contamination (MCC)" />
<definition value="Confirmation if MCC remains in the primary sample." />
</concept>
<concept>
<code value="PS-22" />
<display value="Primary Sample - Option for all products of conception" />
<definition value="Future management for products of conception." />
</concept>
<concept>
<code value="PS-23" />
<display value="Primary Sample - Blasts %" />
<definition value="Blast count in the primary sample (Haemonc) - sourced at local SIHMDS." />
</concept>
<concept>
<code value="PS-24" />
<display value="Primary Sample - High infection risk reason" />
<definition value="The high contamination risk reason for a primary sample." />
</concept>
</concept>
<concept>
<code value="datagroup-sample-preparation" />
<display value="Sample Preparation" />
<definition value="Data group - Sample Preparation" />
<concept>
<code value="SP-1" />
<display value="Sample Preparation - Parent primary sample id" />
<definition value="Id of primary sample this derived from" />
</concept>
<concept>
<code value="SP-2" />
<display value="Sample Preparation - Id (many)" />
<definition value="Id of sample preparation provided, linked to the stated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER)." />
</concept>
<concept>
<code value="SP-3" />
<display value="Sample Preparation - Id assigning authority ODS code (many)" />
<definition value="Authority who assigned the sample preparation id(ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY))" />
</concept>
<concept>
<code value="SP-4" />
<display value="Sample Preparation - Sample storage details" />
<definition value="Where sample preparation is in storage or where it needs to be stored." />
</concept>
<concept>
<code value="SP-5" />
<display value="Sample Preparation - Volume" />
<definition value="Volume of provided sample preparation." />
</concept>
<concept>
<code value="SP-6" />
<display value="Sample Preparation - Performed date" />
<definition value="Date at which the sample preparation was completed." />
</concept>
<concept>
<code value="SP-7" />
<display value="Sample Preparation - Received date" />
<definition value="Date at which sample preparation was received at a laboratory (SAMPLE RECEIPT DATE)." />
</concept>
<concept>
<code value="SP-8" />
<display value="Sample Preparation - Sample preparation" />
<definition value="Cell separation applied to a primary sample." />
</concept>
</concept>
<concept>
<code value="datagroup-final-sample" />
<display value="Final Sample" />
<definition value="Data group - Final Sample" />
<concept>
<code value="FS-1" />
<display value="Final Sample - Parent primary sample id" />
<definition value="Id of primary this derived from." />
</concept>
<concept>
<code value="FS-2" />
<display value="Final Sample - Parent sample preparation id" />
<definition value="Id of sample preparation this derived from." />
</concept>
<concept>
<code value="FS-3" />
<display value="Final Sample - Id (many)" />
<definition value="Id of final sample provided, linked to the associated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER)." />
</concept>
<concept>
<code value="FS-4" />
<display value="Final Sample - Id assigning authority ODS code (many)" />
<definition value="Authority who assigned the final sample id ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY)." />
</concept>
<concept>
<code value="FS-5" />
<display value="Final Sample - Sample storage details" />
<definition value="Where a final sample is in storage or where it needs to be stored." />
</concept>
<concept>
<code value="FS-6" />
<display value="Final Sample - Volume" />
<definition value="Volume of provided final sample." />
</concept>
<concept>
<code value="FS-7" />
<display value="Final Sample - Performed date" />
<definition value="Date at which the final sample was extracted." />
</concept>
<concept>
<code value="FS-8" />
<display value="Final Sample - Received date" />
<definition value="Date at which a final sample was received at a laboratory (SAMPLE RECEIPT DATE)." />
</concept>
<concept>
<code value="FS-9" />
<display value="Final Sample - Final sample" />
<definition value="Material to be genomically tested." />
</concept>
</concept>
<concept>
<code value="datagroup-previous-genomic-report" />
<display value="Previous Genomic Report" />
<definition value="Data group - Previous Genomic Report" />
<concept>
<code value="PGR-1" />
<display value="Previous Genomic Report - Report referral summary" />
<definition value="Referring clinician's summary of the previous genomic report to support test request." />
</concept>
<concept>
<code value="PGR-2" />
<display value="Previous Genomic Report - Report file/link" />
<definition value="A copy of/or link to the previous genomic report." />
</concept>
<concept>
<code value="PGR-3" />
<display value="Previous Genomic Report - Test performed date" />
<definition value="The date a previous genomic test was performed." />
</concept>
<concept>
<code value="PGR-4" />
<display value="Previous Genomic Report - Report identifier" />
<definition value="The identifier for the previous genomic report." />
</concept>
<concept>
<code value="PGR-5" />
<display value="Previous Genomic Report - Patient's first name" />
<definition value="The first name of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-6" />
<display value="Previous Genomic Report - Patient's surname" />
<definition value="The surname of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-7" />
<display value="Previous Genomic Report - Patient's address" />
<definition value="The address of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-8" />
<display value="Previous Genomic Report - Patient's post code" />
<definition value="The postcode of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-9" />
<display value="Previous Genomic Report - Patient's country" />
<definition value="The country of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-10" />
<display value="Previous Genomic Report - Patient's date of birth" />
<definition value="The date of birth of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-11" />
<display value="Previous Genomic Report - Patient's NHS number" />
<definition value="The NHS number of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-12" />
<display value="Previous Genomic Report - Patient's alternative identifier" />
<definition value="The alternative identifier of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-13" />
<display value="Previous Genomic Report - Patient's relationship to requesting patient" />
<definition value="The relationship of the patient on the previous genomic report to the requesting patient." />
</concept>
<concept>
<code value="PGR-14" />
<display value="Previous Genomic Report - Patient's clinical genetic number" />
<definition value="The individual clinical genetic number of the patient on the previous genomic report." />
</concept>
<concept>
<code value="PGR-15" />
<display value="Previous Genomic Report - Patient's pedigree number" />
<definition value="The pedigree number of the patient on the previous genomic report which links their family." />
</concept>
<concept>
<code value="PGR-16" />
<display value="Previous Genomic Report - Report lab test number" />
<definition value="The lab test number from the previous genomic report." />
</concept>
<concept>
<code value="PGR-17" />
<display value="Previous Genomic Report - Report of genetic analysis" />
<definition value="The clinical outcomes from the previous genomic report." />
</concept>
<concept>
<code value="PGR-18" />
<display value="Previous Genomic Report - Report performer full name" />
<definition value="The full name of the individual that authored the previous genomic test report." />
</concept>
<concept>
<code value="PGR-19" />
<display value="Previous Genomic Report - Report performer organisation ODS code" />
<definition value="The organisation ODS code of the individual that authored the previous genomic test report." />
</concept>
<concept>
<code value="PGR-20" />
<display value="Previous Genomic Report - Original requester full name" />
<definition value="The full name of the individual that requested the previous genomic test report." />
</concept>
<concept>
<code value="PGR-21" />
<display value="Previous Genomic Report - Original requester organisation ODS code" />
<definition value="The organisation ODS code of the individual that requested the previous genomic test report." />
</concept>
<concept>
<code value="PGR-22" />
<display value="Previous Genomic Report - Original requester reason for request" />
<definition value="The reason for requesting the previous genomic test report." />
</concept>
</concept>
<concept>
<code value="datagroup-relevant-clinical-report" />
<display value="Relevant Clinical Report" />
<definition value="Data group - Relevant Clinical Report" />
<concept>
<code value="RCP-1" />
<display value="Relevant Clinical Report - Report title" />
<definition value="Title of relevant clinical report." />
</concept>
<concept>
<code value="RCP-2" />
<display value="Relevant Clinical Report - Report referral summary" />
<definition value="Referring clinician's summary of the previous relevant clinical report to support test request." />
</concept>
<concept>
<code value="RCP-3" />
<display value="Relevant Clinical Report - Report file/link" />
<definition value="A copy of/or link to the relevant clinical report." />
</concept>
<concept>
<code value="RCP-4" />
<display value="Relevant Clinical Report - Test performed date" />
<definition value="The date a relevant clinical report was performed." />
</concept>
<concept>
<code value="RCP-5" />
<display value="Relevant Clinical Report - Report identifier" />
<definition value="The identifier for the relevant clinical report." />
</concept>
<concept>
<code value="RCP-6" />
<display value="Relevant Clinical Report - Test type" />
<definition value="A name that describes the relevant clinical report." />
</concept>
<concept>
<code value="RCP-7" />
<display value="Relevant Clinical Report - Test result value comparator" />
<definition value="A comparator that may be used to indicate whether the actual value is greater or less than the stated value. Applies to numeric values only." />
</concept>
<concept>
<code value="RCP-8" />
<display value="Relevant Clinical Report - Test result value unit of measure" />
<definition value="The name and code of the unit of measure associated with the test result value. Applies to numeric values only." />
</concept>
<concept>
<code value="RCP-9" />
<display value="Relevant Clinical Report - Test result reference range low" />
<definition value="The reference range low value." />
</concept>
<concept>
<code value="RCP-10" />
<display value="Relevant Clinical Report - Test result reference range high" />
<definition value="The reference range high value." />
</concept>
<concept>
<code value="RCP-11" />
<display value="Relevant Clinical Report - Test result test method" />
<definition value="The method of testing/observation that was used." />
</concept>
<concept>
<code value="RCP-12" />
<display value="Relevant Clinical Report - Test result reference range text" />
<definition value="A human readable text-based description to provide additional information about the reference range. For example, the target population that the reference range applies to and/or differences based on factors such as age or sex." />
</concept>
<concept>
<code value="RCP-13" />
<display value="Relevant Clinical Report - Test result clinical summary" />
<definition value="A human readable text-based clinical interpretation of the test result and any additional notes provided by the performing organisation." />
</concept>
<concept>
<code value="RCP-14" />
<display value="Relevant Clinical Report - Report result" />
<definition value="Reference to the result(s)/result groups contained in the relevant clinical report" />
</concept>
<concept>
<code value="RCP-15" />
<display value="Relevant Clinical Report - Report performer full name" />
<definition value="The full name of the individual that authored the relevant clinical report." />
</concept>
<concept>
<code value="RCP-16" />
<display value="Relevant Clinical Report - Report performer organisation ODS code" />
<definition value="The identifier of the org which authored the patient's relevant clinical report." />
</concept>
<concept>
<code value="RCP-17" />
<display value="Relevant Clinical Report - Original requester full name" />
<definition value="The full name of the individual that requested the relevant clinical report." />
</concept>
<concept>
<code value="RCP-18" />
<display value="Relevant Clinical Report - Original requester organisation ODS code" />
<definition value="The organisation ODS code of the individual that requested the relevant clinical report." />
</concept>
<concept>
<code value="RCP-19" />
<display value="Relevant Clinical Report - Original requester reason for request" />
<definition value="The reason for requesting the relevant clinical report." />
</concept>
</concept>
<concept>
<code value="datagroup-patient-clinical-information" />
<display value="Patient Clinical Information" />
<definition value="Data group - Patient Clinical Information" />
<concept>
<code value="PCI-1" />
<display value="Genomic Ethnicity" />
<definition value="Patient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish" />
</concept>
<concept>
<code value="PCI-2" />
<display value="Disease Status" />
<definition value="If the patient is affected, unaffected, or it is unknown." />
</concept>
<concept>
<code value="PCI-3" />
<display value="Date of Diagnosis" />
<definition value="The patient's date of diagnosis." />
</concept>
<concept>
<code value="PCI-4" />
<display value="Age at disease onset" />
<definition value="The age when a change in patients' health was first noted in line with suspected diagnosis." />
</concept>
<concept>
<code value="PCI-5" />
<display value="Known/Suspected Disease" />
<definition value="Disease a patient is believed, known to have, or be at risk of developing." />
</concept>
<concept>
<code value="PCI-6" />
<display value="Phenotypic details (many)" />
<definition value="The HPO (or alternative ontology as appropriate) term names for the observable disease traits." />
</concept>
<concept>
<code value="PCI-7" />
<display value="Symptoms at onset" />
<definition value="The patient's symptoms at onset." />
</concept>
<concept>
<code value="PCI-8" />
<display value="Disease penetrance" />
<definition value="Confirms if all individuals with a disease show clinical symptoms or if there are carriers who do not." />
</concept>
<concept>
<code value="PCI-9" />
<display value="Has multiple tumours" />
<definition value="Does the patient have multiple tumours." />
</concept>
<concept>
<code value="PCI-10" />
<display value="Count of tumours" />
<definition value="How many tumours the patient has." />
</concept>
<concept>
<code value="PCI-11" />
<display value="Site of tumour (many)" />
<definition value="Location of the tumours on the body." />
</concept>
<concept>
<code value="PCI-12" />
<display value="Solid Tumour Type" />
<definition value="The patient's solid tumour type." />
</concept>
<concept>
<code value="PCI-13" />
<display value="Liquid Tumour Type" />
<definition value="The patient's liquid tumour type." />
</concept>
<concept>
<code value="PCI-14" />
<display value="Tumour sites - Body image diagram" />
<definition value="Image attachment of body with tumour sites highlighted." />
</concept>
<concept>
<code value="PCI-15" />
<display value="Pedigree details / Relevant family history" />
<definition value="The patient's pedigree/family history details (inc family history of cancer)." />
</concept>
<concept>
<code value="PCI-16" />
<display value="Pedigree diagram" />
<definition value="Image attachment of pedigree details" />
</concept>
<concept>
<code value="PCI-17" />
<display value="Laterality of hearing loss" />
<definition value="Laterality of the hearing loss i.e. bilateral or unilateral." />
</concept>
<concept>
<code value="PCI-18" />
<display value="Fetal maternal screening genotype" />
<definition value="Maternal screening genotype for haemoglobinopathy testing." />
</concept>
<concept>
<code value="PCI-19" />
<display value="Is patient on TKI therapy" />
<definition value="If the patient is on tyrosine kinase inhibitor therapy." />
</concept>
<concept>
<code value="PCI-20" />
<display value="Is patient in treatment free remission" />
<definition value="If the patient is in treatment free remission." />
</concept>
<concept>
<code value="PCI-21" />
<display value="Legal considerations" />
<definition value="Legal considerations for a given request." />
</concept>
<concept>
<code value="PCI-22" />
<display value="Fetal paternal screening genotype" />
<definition value="Paternal screening genotype for haemoglobinopathy testing." />
</concept>
<concept>
<code value="PCI-23" />
<display value="Expected Maternity Unit - Organisation name" />
<definition value="Requesting clinician's organisation name." />
</concept>
<concept>
<code value="PCI-24" />
<display value="Expected Maternity Unit - Organisation address" />
<definition value="Requesting clinician's organisation address." />
</concept>
<concept>
<code value="PCI-25" />
<display value="Expected Maternity Unit - Organisation ODS code" />
<definition value="Requesting clinician's organisation ODS code." />
</concept>
<concept>
<code value="PCI-26" />
<display value="Expected Maternity Unit - Department name" />
<definition value="Requesting clinician's department name." />
</concept>
<concept>
<code value="PCI-27" />
<display value="Growth history" />
<definition value="Summary passage of text to highlight patient centile history e.g. head circumference, weight, etc." />
</concept>
<concept>
<code value="PCI-28" />
<display value="Severity of hearing loss" />
<definition value="Free text regarding hearing loss" />
</concept>
<concept>
<code value="PCI-29" />
<display value="Retinal degeneration" />
<definition value="Free text regarding retinal degeneration" />
</concept>
<concept>
<code value="PCI-30" />
<display value="Risk factors" />
<definition value="Toxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication." />
</concept>
<concept>
<code value="PCI-31" />
<display value="Suspected inborn error type(s)" />
<definition value="Suspected inborn error type(s)" />
</concept>
<concept>
<code value="PCI-32" />
<display value="Abnormal infection history site" />
<definition value="Abnormal infection history site organism" />
</concept>
<concept>
<code value="PCI-33" />
<display value="Abnormal infection history site organism" />
<definition value="Abnormal infection history site organism" />
</concept>
<concept>
<code value="PCI-34" />
<display value="Is on ig replacement" />
<definition value="If the patient is on immunoglobin replacement treatment." />
</concept>
</concept>
<concept>
<code value="further-supporting-information" />
<display value="Further Supporting Information" />
<definition value="Data group - Further Supporting Information" />
<concept>
<code value="FSI-1" />
<display value="Further Supporting Information" />
<definition value="Supporting information which has not been captured elsewhere." />
</concept>
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "mds-questiontag-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"version": "0.1.0",
"name": "MDSQuestionTagGenomics",
"title": "MDS Question Tag Genomics",
"status": "draft",
"date": "2025-07-29T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag.",
"copyright": "Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"hierarchyMeaning": "grouped-by",
"content": "complete",
"concept": [
{
"code": "datagroup-healthcare-professional",
"display": "Healthcare Professional",
"definition": "Data group - Healthcare professional",
"concept": [
{
"code": "HCP-1",
"display": "HCP - Genomic test order role",
"definition": "HCP's function within the genomic test ordering process"
},
{
"code": "HCP-2",
"display": "HCP - Full name",
"definition": "HCP's full name."
},
{
"code": "HCP-3",
"display": "HCP - Job title",
"definition": "HCP's job title."
},
{
"code": "HCP-4",
"display": "HCP - Current specialty",
"definition": "HCP's current specialty."
},
{
"code": "HCP-5",
"display": "HCP - Phone",
"definition": "HCP's phone number."
},
{
"code": "HCP-6",
"display": "HCP - Email address",
"definition": "HCP's email address."
},
{
"code": "HCP-7",
"display": "HCP - Organisation name",
"definition": "HCP's organisation name."
},
{
"code": "HCP-8",
"display": "HCP - Organisation address",
"definition": "HCP's organisation address."
},
{
"code": "HCP-9",
"display": "HCP - Organisation ODS code",
"definition": "HCP's organisation ODS code (ORGANISATION IDENTIFIER (CODE OF ORDERING ENTITY))"
},
{
"code": "HCP-10",
"display": "HCP - Department name",
"definition": "HCP's department name."
},
{
"code": "HCP-11",
"display": "HCP - Professional registration number",
"definition": "HCP's professional registration number such as their GMC number."
},
{
"code": "HCP-12",
"display": "HCP - Professional registration number type",
"definition": "HCP's professional registration number type such as 'GMC'."
},
{
"code": "HCP-13",
"display": "HCP - Genomic report delivery method",
"definition": "HCP's report preferred delivery method."
},
{
"code": "HCP-14",
"display": "HCP - Central email for address and reporting (many)",
"definition": "Central email address provided by a HCP."
}
]
},
{
"code": "datagroup-patient",
"display": "Patient",
"definition": "Data group - Patient",
"concept": [
{
"code": "P-1",
"display": "Patient - Title",
"definition": "Patient's title."
},
{
"code": "P-2",
"display": "Patient - First name",
"definition": "Patient's first name."
},
{
"code": "P-3",
"display": "Patient - Surname",
"definition": "Patient's last name."
},
{
"code": "P-4",
"display": "Patient - Date of birth",
"definition": "Patient's date of birth."
},
{
"code": "P-5",
"display": "Patient - Address",
"definition": "Patient's home address."
},
{
"code": "P-6",
"display": "Patient - Postcode",
"definition": "Patient's home postcode."
},
{
"code": "P-7",
"display": "Patient - Country",
"definition": "Patient's home country."
},
{
"code": "P-8",
"display": "Patient - Life status at time of request",
"definition": "Patient's alive or deceased status when ordering the test."
},
{
"code": "P-9",
"display": "Patient - Ethnicity",
"definition": "Patient's ethnicity. Includes 'other' / 'not stated'."
},
{
"code": "P-10",
"display": "Patient - Sex registered at birth",
"definition": "Patient's phenotypic sex classification. Physical characteristic. Currently determined by the Dr at birth. Gender for PLCM."
},
{
"code": "P-11",
"display": "Patient - Organisation responsible for GP practice ODS code",
"definition": "ODS code of organisation responsible for the GP Practice where the patient is registered."
},
{
"code": "P-12",
"display": "Patient - GP practice's ODS Code",
"definition": "Patient's GP practice ODS code. Includes 'N/A' and 'Not Known'."
},
{
"code": "P-13",
"display": "Patient - Is from consanguineous union",
"definition": "The fact of the patient's biological parents being descended from the same ancestor."
},
{
"code": "P-14",
"display": "Patient - GP's full name",
"definition": "Patient's GP's full name."
},
{
"code": "P-15",
"display": "Patient - NHS number",
"definition": "Patient's NHS number."
},
{
"code": "P-16",
"display": "Patient - Local identifier",
"definition": "Patient's identification code other than NHS number. (LOCAL PATIENT IDENTIFIER (EXTENDED))"
},
{
"code": "P-17",
"display": "Patient - Reason for unavailable NHS number",
"definition": "Reason for an NHS number not being provided."
},
{
"code": "P-18",
"display": "Patient - Relationship to proband",
"definition": "This patient's relationship to the primary patient."
},
{
"code": "P-19",
"display": "Patient - Gender Identity",
"definition": "Patient's stated gender, determined by the patient."
},
{
"code": "P-20",
"display": "Patient - Date of death",
"definition": "Patient's date/time of death."
},
{
"code": "P-21",
"display": "Patient - Chromosomal sex",
"definition": "Patient's genomic / karyotypic characteristic. Determined by genomic testing."
},
{
"code": "P-22",
"display": "Patient - Pregnancy gestation period",
"definition": "Patient's term of active pregnancy at point of test request."
},
{
"code": "P-23",
"display": "Patient - Fetal gestation",
"definition": "Stage during patient pregnancy at which it terminated."
},
{
"code": "P-24",
"display": "Patient - Estimated delivery date (EDD)",
"definition": "Patient's estimated delivery date."
},
{
"code": "P-25",
"display": "Patient - Pregnancy type",
"definition": "Type of conception"
},
{
"code": "P-26",
"display": "Patient - IVF age of egg donor",
"definition": "The age of the patient who donated the egg at the time of donation."
},
{
"code": "P-27",
"display": "Patient - Diagnosed with or being treated for cancer",
"definition": "Has the patient been diagnosed with or are they being treated for cancer."
},
{
"code": "P-28",
"display": "Patient - Had transplant",
"definition": "Has the patient ever had a transplant."
},
{
"code": "P-29",
"display": "Patient - Type of transplant",
"definition": "What type of transplant the patient had."
},
{
"code": "P-30",
"display": "Patient - Transplant date",
"definition": "When the patient had the transplant."
},
{
"code": "P-31",
"display": "Patient - Had transfusion in the last 6 weeks",
"definition": "Has the patient had a transfusion in the last 6 weeks."
},
{
"code": "P-32",
"display": "Patient - Type of transfusion",
"definition": "What type of transfusion the patient has had."
},
{
"code": "P-33",
"display": "Patient - Transfusion date",
"definition": "When the patient had the transfusion."
},
{
"code": "P-34",
"display": "Patient - Height (m)",
"definition": "Patient's height."
},
{
"code": "P-35",
"display": "Patient - Withheld identity reason",
"definition": "Confirmation why the patient is withholding identity details."
},
{
"code": "P-36",
"display": "Patient - GP's professional registration number",
"definition": "Patient's GP's professional registration number."
},
{
"code": "P-37",
"display": "Patient - Pedigree / Family identifier",
"definition": "Patient's pedigree or family identifying id."
},
{
"code": "P-38",
"display": "Patient - Pregnancy status",
"definition": "Patient's pregnancy status."
}
]
},
{
"code": "datagroup-fetus",
"display": "Fetus",
"definition": "Data group - Fetus",
"concept": [
{
"code": "F-1",
"display": "Fetus - Local identifier",
"definition": "Fetus' identification code other than NHS number."
},
{
"code": "F-2",
"display": "Fetus - Observed sex",
"definition": "Fetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM."
},
{
"code": "F-3",
"display": "Fetus - Chromosomal sex",
"definition": "Fetus' genomic / karyotypic characteristic. Determined by genomic testing."
},
{
"code": "F-4",
"display": "Fetus - Are multiple fetuses being tested",
"definition": "Confirmation that multiple fetuses are being tested."
},
{
"code": "F-5",
"display": "Fetus - Is testing for fetal loss from 24 weeks of gestation",
"definition": "Confirmation that the test is for a loss of pregnancy after 24 weeks gestation."
},
{
"code": "F-6",
"display": "Fetus - Life status at time of request",
"definition": "Fetus' alive or deceased status details at the point of test ordering."
}
]
},
{
"code": "datagroup-record-of-discussion",
"display": "Record of Discussion",
"definition": "Data group - Record of discussion",
"concept": [
{
"code": "ROD-1",
"display": "RoD - Included",
"definition": "Has RoD been included with request."
},
{
"code": "ROD-2",
"display": "RoD - Patient category",
"definition": "Confirmation of who made the RoD decisions."
},
{
"code": "ROD-3",
"display": "RoD - Recording clinician name",
"definition": "Name of the clinician who recorded the RoD details."
},
{
"code": "ROD-4",
"display": "RoD - Record of discussion form - copy attached",
"definition": "Marker to confirm on a test request form that an RoD has been included."
},
{
"code": "ROD-5",
"display": "RoD - Patient choice status",
"definition": "Indication of the patient consenting to the genomic test request."
},
{
"code": "ROD-6",
"display": "RoD - Has research participation been discussed",
"definition": "Marker to confirm RoD conversation has taken place."
},
{
"code": "ROD-7",
"display": "RoD - Remote consent",
"definition": "Where consent has been recorded on behalf of the patient via remote confirmation."
},
{
"code": "ROD-8",
"display": "RoD - Test type",
"definition": "If the test is WGS cancer or WGS rare disease."
},
{
"code": "ROD-9",
"display": "RoD - Research opt out reason",
"definition": "Why patient has opted out of research."
},
{
"code": "ROD-10",
"display": "RoD - Responsible clinician name",
"definition": "Name of the clinician who is responsible for the patient's genomic test request."
},
{
"code": "ROD-11",
"display": "RoD - Patient conversation taken place, ROD form to follow",
"definition": "Marker to confirm RoD conversation has taken place but will be sent separately."
},
{
"code": "ROD-12",
"display": "RoD - Signature",
"definition": "Copy of wet signature or valid e-signature."
},
{
"code": "ROD-13",
"display": "RoD - Document/Link",
"definition": "A copy of/or link to the previous genomic or non-genomic report."
}
]
},
{
"code": "datagroup-test-request",
"display": "Test Request",
"definition": "Data group - Test Request",
"concept": [
{
"code": "TR-1",
"display": "Test Request - Test request id",
"definition": "Unique id to identify this test request."
},
{
"code": "TR-2",
"display": "Test Request - Payment status",
"definition": "How the test request is funded"
},
{
"code": "TR-3",
"display": "Test Request - Date and time request sent",
"definition": "Date and time the test request was sent from the requesting clinician (TEST REQUEST DATE)."
},
{
"code": "TR-4",
"display": "Test Request - Reason for testing",
"definition": "The reason for a genomic test."
},
{
"code": "TR-5",
"display": "Test Request - High level test identifier",
"definition": "The high level id which identifies the requested test. Options provided by Test Directory."
},
{
"code": "TR-6",
"display": "Test Request - High level test identifier description",
"definition": "The high level name of the CI referred to."
},
{
"code": "TR-7",
"display": "Test Request - Low level test identifier",
"definition": "The low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE)."
},
{
"code": "TR-8",
"display": "Test Request - Low level test identifier description",
"definition": "The low level CITT name of the considered test."
},
{
"code": "TR-9",
"display": "Test Request - Low level multipurpose test identifier",
"definition": "The low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION)."
},
{
"code": "TR-10",
"display": "Test Request - Low level multipurpose test identifier description",
"definition": "The low level name of the test to be actioned when the CITT code is multipurpose."
},
{
"code": "TR-11",
"display": "Test Request - Count of patients to be tested",
"definition": "Count of patients to be tested including the proband/primary patient."
},
{
"code": "TR-12",
"display": "Test Request - Urgency reason",
"definition": "The test request urgency reason."
},
{
"code": "TR-13",
"display": "Test Request - Reason for reanalysis",
"definition": "The reason reanalysis has been requested."
},
{
"code": "TR-14",
"display": "Test Request - Detail of reason for reanalysis",
"definition": "Further detail associated to the reason reanalysis has been requested."
},
{
"code": "TR-15",
"display": "Test Request - Type of reanalysis",
"definition": "The type of reanalysis which has been requested."
},
{
"code": "TR-16",
"display": "Test Request - DNA storage information",
"definition": "If the reason for testing is DNA storage, this captures further detail."
},
{
"code": "TR-17",
"display": "Test Request - Is urgent",
"definition": "Confirmation if the test request is urgent."
},
{
"code": "TR-18",
"display": "Test Request - Date report required by",
"definition": "The date a completed genomic report is required by."
},
{
"code": "TR-19",
"display": "Test Request - Recipient ODS code",
"definition": "ODS code of the first organisation which receives the genomic test request."
}
]
},
{
"code": "datagroup-primary-sample",
"display": "Primary Sample",
"definition": "Data group - Primary Sample",
"concept": [
{
"code": "PS-1",
"display": "Primary Sample - Destination organisation ODS code",
"definition": "Destination for primary sample."
},
{
"code": "PS-2",
"display": "Primary Sample - Id (many)",
"definition": "Id of primary sample provided, linked to the stated assigning authority."
},
{
"code": "PS-3",
"display": "Primary Sample - Id assigning authority ODS code (many)",
"definition": "Authority who assigned the primary sample id."
},
{
"code": "PS-4",
"display": "Primary Sample - Received date",
"definition": "Date at which a primary sample was received at a laboratory (SAMPLE RECEIPT DATE)."
},
{
"code": "PS-5",
"display": "Primary Sample - Sample storage details",
"definition": "Where a primary sample is in storage or where it needs to be stored."
},
{
"code": "PS-6",
"display": "Primary Sample - Volume",
"definition": "Volume of provided primary sample."
},
{
"code": "PS-7",
"display": "Primary Sample - Test request Id",
"definition": "The id of the associated genomic test being requested."
},
{
"code": "PS-8",
"display": "Primary Sample - Patient NHS number",
"definition": "Patient NHS number."
},
{
"code": "PS-9",
"display": "Primary Sample - Patient local identifier",
"definition": "Patient identification code other than NHS number."
},
{
"code": "PS-10",
"display": "Primary Sample - Obtained date",
"definition": "Date at which a specimen/biopsy was obtained from patient."
},
{
"code": "PS-11",
"display": "Primary Sample - Primary sample",
"definition": "Initial sample from patient submitted into a laboratory."
},
{
"code": "PS-12",
"display": "Primary Sample - Primary sample state",
"definition": "How the primary sample is preserved."
},
{
"code": "PS-13",
"display": "Primary Sample - Necrosis",
"definition": "% necrotic cells in primary sample."
},
{
"code": "PS-14",
"display": "Primary Sample - Nucleated cell count",
"definition": "Nucleated cell count in the primary sample (Solid Tumour and Haem-Onc)."
},
{
"code": "PS-15",
"display": "Primary Sample - Tumour nuclear content",
"definition": "Neoplastic cell content in the primary sample(Solid Tumour) - sourced at local lab. (%)"
},
{
"code": "PS-16",
"display": "Primary Sample - Tumour cellularity",
"definition": "The proportion of the primary sample which is tumour nuclei."
},
{
"code": "PS-17",
"display": "Primary Sample - Solid tumour morphology",
"definition": "The histology and likely course of development of a tumour."
},
{
"code": "PS-18",
"display": "Primary Sample - Solid tumour topography",
"definition": "The tumour sample site. e.g. from colon, stomach etc."
},
{
"code": "PS-19",
"display": "Primary Sample - Biopsy site",
"definition": "Site where the primary sample was taken from."
},
{
"code": "PS-20",
"display": "Primary Sample - Skin/Bone sample affected",
"definition": "If the skin or bone provided is unaffected or affected."
},
{
"code": "PS-21",
"display": "Primary Sample - Maternal cell contamination (MCC)",
"definition": "Confirmation if MCC remains in the primary sample."
},
{
"code": "PS-22",
"display": "Primary Sample - Option for all products of conception",
"definition": "Future management for products of conception."
},
{
"code": "PS-23",
"display": "Primary Sample - Blasts %",
"definition": "Blast count in the primary sample (Haemonc) - sourced at local SIHMDS."
},
{
"code": "PS-24",
"display": "Primary Sample - High infection risk reason",
"definition": "The high contamination risk reason for a primary sample."
}
]
},
{
"code": "datagroup-sample-preparation",
"display": "Sample Preparation",
"definition": "Data group - Sample Preparation",
"concept": [
{
"code": "SP-1",
"display": "Sample Preparation - Parent primary sample id",
"definition": "Id of primary sample this derived from"
},
{
"code": "SP-2",
"display": "Sample Preparation - Id (many)",
"definition": "Id of sample preparation provided, linked to the stated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER)."
},
{
"code": "SP-3",
"display": "Sample Preparation - Id assigning authority ODS code (many)",
"definition": "Authority who assigned the sample preparation id(ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY))"
},
{
"code": "SP-4",
"display": "Sample Preparation - Sample storage details",
"definition": "Where sample preparation is in storage or where it needs to be stored."
},
{
"code": "SP-5",
"display": "Sample Preparation - Volume",
"definition": "Volume of provided sample preparation."
},
{
"code": "SP-6",
"display": "Sample Preparation - Performed date",
"definition": "Date at which the sample preparation was completed."
},
{
"code": "SP-7",
"display": "Sample Preparation - Received date",
"definition": "Date at which sample preparation was received at a laboratory (SAMPLE RECEIPT DATE)."
},
{
"code": "SP-8",
"display": "Sample Preparation - Sample preparation",
"definition": "Cell separation applied to a primary sample."
}
]
},
{
"code": "datagroup-final-sample",
"display": "Final Sample",
"definition": "Data group - Final Sample",
"concept": [
{
"code": "FS-1",
"display": "Final Sample - Parent primary sample id",
"definition": "Id of primary this derived from."
},
{
"code": "FS-2",
"display": "Final Sample - Parent sample preparation id",
"definition": "Id of sample preparation this derived from."
},
{
"code": "FS-3",
"display": "Final Sample - Id (many)",
"definition": "Id of final sample provided, linked to the associated assigning authority. Occurs multiple times (SAMPLE IDENTIFIER)."
},
{
"code": "FS-4",
"display": "Final Sample - Id assigning authority ODS code (many)",
"definition": "Authority who assigned the final sample id ORGANISATION IDENTIFIER (CODE OF HISTOPATHOLOGY LABORATORY ENTITY)."
},
{
"code": "FS-5",
"display": "Final Sample - Sample storage details",
"definition": "Where a final sample is in storage or where it needs to be stored."
},
{
"code": "FS-6",
"display": "Final Sample - Volume",
"definition": "Volume of provided final sample."
},
{
"code": "FS-7",
"display": "Final Sample - Performed date",
"definition": "Date at which the final sample was extracted."
},
{
"code": "FS-8",
"display": "Final Sample - Received date",
"definition": "Date at which a final sample was received at a laboratory (SAMPLE RECEIPT DATE)."
},
{
"code": "FS-9",
"display": "Final Sample - Final sample",
"definition": "Material to be genomically tested."
}
]
},
{
"code": "datagroup-previous-genomic-report",
"display": "Previous Genomic Report",
"definition": "Data group - Previous Genomic Report",
"concept": [
{
"code": "PGR-1",
"display": "Previous Genomic Report - Report referral summary",
"definition": "Referring clinician's summary of the previous genomic report to support test request."
},
{
"code": "PGR-2",
"display": "Previous Genomic Report - Report file/link",
"definition": "A copy of/or link to the previous genomic report."
},
{
"code": "PGR-3",
"display": "Previous Genomic Report - Test performed date",
"definition": "The date a previous genomic test was performed."
},
{
"code": "PGR-4",
"display": "Previous Genomic Report - Report identifier",
"definition": "The identifier for the previous genomic report."
},
{
"code": "PGR-5",
"display": "Previous Genomic Report - Patient's first name",
"definition": "The first name of the patient on the previous genomic report."
},
{
"code": "PGR-6",
"display": "Previous Genomic Report - Patient's surname",
"definition": "The surname of the patient on the previous genomic report."
},
{
"code": "PGR-7",
"display": "Previous Genomic Report - Patient's address",
"definition": "The address of the patient on the previous genomic report."
},
{
"code": "PGR-8",
"display": "Previous Genomic Report - Patient's post code",
"definition": "The postcode of the patient on the previous genomic report."
},
{
"code": "PGR-9",
"display": "Previous Genomic Report - Patient's country",
"definition": "The country of the patient on the previous genomic report."
},
{
"code": "PGR-10",
"display": "Previous Genomic Report - Patient's date of birth",
"definition": "The date of birth of the patient on the previous genomic report."
},
{
"code": "PGR-11",
"display": "Previous Genomic Report - Patient's NHS number",
"definition": "The NHS number of the patient on the previous genomic report."
},
{
"code": "PGR-12",
"display": "Previous Genomic Report - Patient's alternative identifier",
"definition": "The alternative identifier of the patient on the previous genomic report."
},
{
"code": "PGR-13",
"display": "Previous Genomic Report - Patient's relationship to requesting patient",
"definition": "The relationship of the patient on the previous genomic report to the requesting patient."
},
{
"code": "PGR-14",
"display": "Previous Genomic Report - Patient's clinical genetic number",
"definition": "The individual clinical genetic number of the patient on the previous genomic report."
},
{
"code": "PGR-15",
"display": "Previous Genomic Report - Patient's pedigree number",
"definition": "The pedigree number of the patient on the previous genomic report which links their family."
},
{
"code": "PGR-16",
"display": "Previous Genomic Report - Report lab test number",
"definition": "The lab test number from the previous genomic report."
},
{
"code": "PGR-17",
"display": "Previous Genomic Report - Report of genetic analysis",
"definition": "The clinical outcomes from the previous genomic report."
},
{
"code": "PGR-18",
"display": "Previous Genomic Report - Report performer full name",
"definition": "The full name of the individual that authored the previous genomic test report."
},
{
"code": "PGR-19",
"display": "Previous Genomic Report - Report performer organisation ODS code",
"definition": "The organisation ODS code of the individual that authored the previous genomic test report."
},
{
"code": "PGR-20",
"display": "Previous Genomic Report - Original requester full name",
"definition": "The full name of the individual that requested the previous genomic test report."
},
{
"code": "PGR-21",
"display": "Previous Genomic Report - Original requester organisation ODS code",
"definition": "The organisation ODS code of the individual that requested the previous genomic test report."
},
{
"code": "PGR-22",
"display": "Previous Genomic Report - Original requester reason for request",
"definition": "The reason for requesting the previous genomic test report."
}
]
},
{
"code": "datagroup-relevant-clinical-report",
"display": "Relevant Clinical Report",
"definition": "Data group - Relevant Clinical Report",
"concept": [
{
"code": "RCP-1",
"display": "Relevant Clinical Report - Report title",
"definition": "Title of relevant clinical report."
},
{
"code": "RCP-2",
"display": "Relevant Clinical Report - Report referral summary",
"definition": "Referring clinician's summary of the previous relevant clinical report to support test request."
},
{
"code": "RCP-3",
"display": "Relevant Clinical Report - Report file/link",
"definition": "A copy of/or link to the relevant clinical report."
},
{
"code": "RCP-4",
"display": "Relevant Clinical Report - Test performed date",
"definition": "The date a relevant clinical report was performed."
},
{
"code": "RCP-5",
"display": "Relevant Clinical Report - Report identifier",
"definition": "The identifier for the relevant clinical report."
},
{
"code": "RCP-6",
"display": "Relevant Clinical Report - Test type",
"definition": "A name that describes the relevant clinical report."
},
{
"code": "RCP-7",
"display": "Relevant Clinical Report - Test result value comparator",
"definition": "A comparator that may be used to indicate whether the actual value is greater or less than the stated value. Applies to numeric values only."
},
{
"code": "RCP-8",
"display": "Relevant Clinical Report - Test result value unit of measure",
"definition": "The name and code of the unit of measure associated with the test result value. Applies to numeric values only."
},
{
"code": "RCP-9",
"display": "Relevant Clinical Report - Test result reference range low",
"definition": "The reference range low value."
},
{
"code": "RCP-10",
"display": "Relevant Clinical Report - Test result reference range high",
"definition": "The reference range high value."
},
{
"code": "RCP-11",
"display": "Relevant Clinical Report - Test result test method",
"definition": "The method of testing/observation that was used."
},
{
"code": "RCP-12",
"display": "Relevant Clinical Report - Test result reference range text",
"definition": "A human readable text-based description to provide additional information about the reference range. For example, the target population that the reference range applies to and/or differences based on factors such as age or sex."
},
{
"code": "RCP-13",
"display": "Relevant Clinical Report - Test result clinical summary",
"definition": "A human readable text-based clinical interpretation of the test result and any additional notes provided by the performing organisation."
},
{
"code": "RCP-14",
"display": "Relevant Clinical Report - Report result",
"definition": "Reference to the result(s)/result groups contained in the relevant clinical report"
},
{
"code": "RCP-15",
"display": "Relevant Clinical Report - Report performer full name",
"definition": "The full name of the individual that authored the relevant clinical report."
},
{
"code": "RCP-16",
"display": "Relevant Clinical Report - Report performer organisation ODS code",
"definition": "The identifier of the org which authored the patient's relevant clinical report."
},
{
"code": "RCP-17",
"display": "Relevant Clinical Report - Original requester full name",
"definition": "The full name of the individual that requested the relevant clinical report."
},
{
"code": "RCP-18",
"display": "Relevant Clinical Report - Original requester organisation ODS code",
"definition": "The organisation ODS code of the individual that requested the relevant clinical report."
},
{
"code": "RCP-19",
"display": "Relevant Clinical Report - Original requester reason for request",
"definition": "The reason for requesting the relevant clinical report."
}
]
},
{
"code": "datagroup-patient-clinical-information",
"display": "Patient Clinical Information",
"definition": "Data group - Patient Clinical Information",
"concept": [
{
"code": "PCI-1",
"display": "Genomic Ethnicity",
"definition": "Patient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish"
},
{
"code": "PCI-2",
"display": "Disease Status",
"definition": "If the patient is affected, unaffected, or it is unknown."
},
{
"code": "PCI-3",
"display": "Date of Diagnosis",
"definition": "The patient's date of diagnosis."
},
{
"code": "PCI-4",
"display": "Age at disease onset",
"definition": "The age when a change in patients' health was first noted in line with suspected diagnosis."
},
{
"code": "PCI-5",
"display": "Known/Suspected Disease",
"definition": "Disease a patient is believed, known to have, or be at risk of developing."
},
{
"code": "PCI-6",
"display": "Phenotypic details (many)",
"definition": "The HPO (or alternative ontology as appropriate) term names for the observable disease traits."
},
{
"code": "PCI-7",
"display": "Symptoms at onset",
"definition": "The patient's symptoms at onset."
},
{
"code": "PCI-8",
"display": "Disease penetrance",
"definition": "Confirms if all individuals with a disease show clinical symptoms or if there are carriers who do not."
},
{
"code": "PCI-9",
"display": "Has multiple tumours",
"definition": "Does the patient have multiple tumours."
},
{
"code": "PCI-10",
"display": "Count of tumours",
"definition": "How many tumours the patient has."
},
{
"code": "PCI-11",
"display": "Site of tumour (many)",
"definition": "Location of the tumours on the body."
},
{
"code": "PCI-12",
"display": "Solid Tumour Type",
"definition": "The patient's solid tumour type."
},
{
"code": "PCI-13",
"display": "Liquid Tumour Type",
"definition": "The patient's liquid tumour type."
},
{
"code": "PCI-14",
"display": "Tumour sites - Body image diagram",
"definition": "Image attachment of body with tumour sites highlighted."
},
{
"code": "PCI-15",
"display": "Pedigree details / Relevant family history",
"definition": "The patient's pedigree/family history details (inc family history of cancer)."
},
{
"code": "PCI-16",
"display": "Pedigree diagram",
"definition": "Image attachment of pedigree details"
},
{
"code": "PCI-17",
"display": "Laterality of hearing loss",
"definition": "Laterality of the hearing loss i.e. bilateral or unilateral."
},
{
"code": "PCI-18",
"display": "Fetal maternal screening genotype",
"definition": "Maternal screening genotype for haemoglobinopathy testing."
},
{
"code": "PCI-19",
"display": "Is patient on TKI therapy",
"definition": "If the patient is on tyrosine kinase inhibitor therapy."
},
{
"code": "PCI-20",
"display": "Is patient in treatment free remission",
"definition": "If the patient is in treatment free remission."
},
{
"code": "PCI-21",
"display": "Legal considerations",
"definition": "Legal considerations for a given request."
},
{
"code": "PCI-22",
"display": "Fetal paternal screening genotype",
"definition": "Paternal screening genotype for haemoglobinopathy testing."
},
{
"code": "PCI-23",
"display": "Expected Maternity Unit - Organisation name",
"definition": "Requesting clinician's organisation name."
},
{
"code": "PCI-24",
"display": "Expected Maternity Unit - Organisation address",
"definition": "Requesting clinician's organisation address."
},
{
"code": "PCI-25",
"display": "Expected Maternity Unit - Organisation ODS code",
"definition": "Requesting clinician's organisation ODS code."
},
{
"code": "PCI-26",
"display": "Expected Maternity Unit - Department name",
"definition": "Requesting clinician's department name."
},
{
"code": "PCI-27",
"display": "Growth history",
"definition": "Summary passage of text to highlight patient centile history e.g. head circumference, weight, etc."
},
{
"code": "PCI-28",
"display": "Severity of hearing loss",
"definition": "Free text regarding hearing loss"
},
{
"code": "PCI-29",
"display": "Retinal degeneration",
"definition": "Free text regarding retinal degeneration"
},
{
"code": "PCI-30",
"display": "Risk factors",
"definition": "Toxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication."
},
{
"code": "PCI-31",
"display": "Suspected inborn error type(s)",
"definition": "Suspected inborn error type(s)"
},
{
"code": "PCI-32",
"display": "Abnormal infection history site",
"definition": "Abnormal infection history site organism"
},
{
"code": "PCI-33",
"display": "Abnormal infection history site organism",
"definition": "Abnormal infection history site organism"
},
{
"code": "PCI-34",
"display": "Is on ig replacement",
"definition": "If the patient is on immunoglobin replacement treatment."
}
]
},
{
"code": "further-supporting-information",
"display": "Further Supporting Information",
"definition": "Data group - Further Supporting Information",
"concept": [
{
"code": "FSI-1",
"display": "Further Supporting Information",
"definition": "Supporting information which has not been captured elsewhere."
}
]
}
]
}

CodeSystem Message Events Genomics

Usage

Common messaging events for Genomics Test Orders and Reports.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/message-events-genomics defines the following codes:

CodeDisplayDefinition
genomictestrequestGenomic Test RequestA Service Request bundle for ordering genomic tests
genomictestresponseGenomic Test ResponseA Diagnostic Report bundle for test results

Table View

CodeSystem.id[0]message-events-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/message-events-genomics
CodeSystem.version[0]0.2.0
CodeSystem.name[0]MessageEventsGenomics
CodeSystem.title[0]Message Events Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2022-11-25
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]Common messaging events for Genomics Test Orders and Reports.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]genomictestrequest
CodeSystem.concept[0].display[0]Genomic Test Request
CodeSystem.concept[0].definition[0]A Service Request bundle for ordering genomic tests
CodeSystem.concept[1].code[0]genomictestresponse
CodeSystem.concept[1].display[0]Genomic Test Response
CodeSystem.concept[1].definition[0]A Diagnostic Report bundle for test results

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="message-events-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/message-events-genomics" />
<version value="0.2.0" />
<name value="MessageEventsGenomics" />
<title value="Message Events Genomics" />
<status value="draft" />
<date value="2022-11-25" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="Common messaging events for Genomics Test Orders and Reports." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="genomictestrequest" />
<display value="Genomic Test Request" />
<definition value="A Service Request bundle for ordering genomic tests" />
</concept>
<concept>
<code value="genomictestresponse" />
<display value="Genomic Test Response" />
<definition value="A Diagnostic Report bundle for test results" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "message-events-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/message-events-genomics",
"version": "0.2.0",
"name": "MessageEventsGenomics",
"title": "Message Events Genomics",
"status": "draft",
"date": "2022-11-25",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "Common messaging events for Genomics Test Orders and Reports.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "genomictestrequest",
"display": "Genomic Test Request",
"definition": "A Service Request bundle for ordering genomic tests"
},
{
"code": "genomictestresponse",
"display": "Genomic Test Response",
"definition": "A Diagnostic Report bundle for test results"
}
]
}

CodeSystem Patient Choice Category Genomics

Usage

A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics defines the following codes:

CodeDisplay
adult-own-choiceAdult (made their own choice)
adult-lack-capacityAdult lacking capacity (choices advised by consultee)
childChild (parent or guardian choices)
clinicianClinician has agreed to the test (in the patient`s best interest)
deceasedDeceased (choices made on behalf of deceased individual)

Table View

CodeSystem.id[0]patient-choice-category-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics
CodeSystem.version[0]0.2.0
CodeSystem.name[0]PatientChoiceCategoryGenomics
CodeSystem.title[0]Patient Choice Category Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2022-12-21T11:27:52.3231281+00:00
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]adult-own-choice
CodeSystem.concept[0].display[0]Adult (made their own choice)
CodeSystem.concept[1].code[0]adult-lack-capacity
CodeSystem.concept[1].display[0]Adult lacking capacity (choices advised by consultee)
CodeSystem.concept[2].code[0]child
CodeSystem.concept[2].display[0]Child (parent or guardian choices)
CodeSystem.concept[3].code[0]clinician
CodeSystem.concept[3].display[0]Clinician has agreed to the test (in the patient`s best interest)
CodeSystem.concept[4].code[0]deceased
CodeSystem.concept[4].display[0]Deceased (choices made on behalf of deceased individual)

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="patient-choice-category-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics" />
<version value="0.2.0" />
<name value="PatientChoiceCategoryGenomics" />
<title value="Patient Choice Category Genomics" />
<status value="draft" />
<date value="2022-12-21T11:27:52.3231281+00:00" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="adult-own-choice" />
<display value="Adult (made their own choice)" />
</concept>
<concept>
<code value="adult-lack-capacity" />
<display value="Adult lacking capacity (choices advised by consultee)" />
</concept>
<concept>
<code value="child" />
<display value="Child (parent or guardian choices)" />
</concept>
<concept>
<code value="clinician" />
<display value="Clinician has agreed to the test (in the patient`s best interest)" />
</concept>
<concept>
<code value="deceased" />
<display value="Deceased (choices made on behalf of deceased individual)" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "patient-choice-category-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics",
"version": "0.2.0",
"name": "PatientChoiceCategoryGenomics",
"title": "Patient Choice Category Genomics",
"status": "draft",
"date": "2022-12-21T11:27:52.3231281+00:00",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "adult-own-choice",
"display": "Adult (made their own choice)"
},
{
"code": "adult-lack-capacity",
"display": "Adult lacking capacity (choices advised by consultee)"
},
{
"code": "child",
"display": "Child (parent or guardian choices)"
},
{
"code": "clinician",
"display": "Clinician has agreed to the test (in the patient`s best interest)"
},
{
"code": "deceased",
"display": "Deceased (choices made on behalf of deceased individual)"
}
]
}

CodeSystem Patient Consultee Genomics

Usage

A code to identify if patient guardian is a Consultee

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics defines the following codes:

CodeDisplay
consulteeConsultee

Table View

CodeSystem.id[0]patient-consultee-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics
CodeSystem.version[0]0.2.0
CodeSystem.name[0]PatientConsulteeGenomics
CodeSystem.title[0]Patient Consultee Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2022-12-28T16:41:15.0168724+00:00
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]A code to identify if patient guardian is a Consultee
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]consultee
CodeSystem.concept[0].display[0]Consultee

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="patient-consultee-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics" />
<version value="0.2.0" />
<name value="PatientConsulteeGenomics" />
<title value="Patient Consultee Genomics" />
<status value="draft" />
<date value="2022-12-28T16:41:15.0168724+00:00" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="A code to identify if patient guardian is a Consultee" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="consultee" />
<display value="Consultee" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "patient-consultee-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics",
"version": "0.2.0",
"name": "PatientConsulteeGenomics",
"title": "Patient Consultee Genomics",
"status": "draft",
"date": "2022-12-28T16:41:15.0168724+00:00",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "A code to identify if patient guardian is a Consultee",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "consultee",
"display": "Consultee"
}
]
}

CodeSystem Patient Choice Research Participation

Usage

A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation defines the following codes:

CodeDisplay
like-to-discuss-laterPatient would like to discuss at a later date
patient-lack-capacityPatient lacks capacity and no consultee available
inappropriate-to-discussInappropriate to have discussion
otherOther

Table View

CodeSystem.id[0]patient-choice-researchparticipation
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation
CodeSystem.version[0]0.2.0
CodeSystem.name[0]PatientChoiceResearchParticipation
CodeSystem.title[0]Patient Choice Research Participation
CodeSystem.status[0]draft
CodeSystem.date[0]2022-12-21T11:27:52.3231281+00:00
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]like-to-discuss-later
CodeSystem.concept[0].display[0]Patient would like to discuss at a later date
CodeSystem.concept[1].code[0]patient-lack-capacity
CodeSystem.concept[1].display[0]Patient lacks capacity and no consultee available
CodeSystem.concept[2].code[0]inappropriate-to-discuss
CodeSystem.concept[2].display[0]Inappropriate to have discussion
CodeSystem.concept[3].code[0]other
CodeSystem.concept[3].display[0]Other

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="patient-choice-researchparticipation" />
<url value="https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation" />
<version value="0.2.0" />
<name value="PatientChoiceResearchParticipation" />
<title value="Patient Choice Research Participation" />
<status value="draft" />
<date value="2022-12-21T11:27:52.3231281+00:00" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="like-to-discuss-later" />
<display value="Patient would like to discuss at a later date" />
</concept>
<concept>
<code value="patient-lack-capacity" />
<display value="Patient lacks capacity and no consultee available" />
</concept>
<concept>
<code value="inappropriate-to-discuss" />
<display value="Inappropriate to have discussion" />
</concept>
<concept>
<code value="other" />
<display value="Other" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "patient-choice-researchparticipation",
"url": "https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation",
"version": "0.2.0",
"name": "PatientChoiceResearchParticipation",
"title": "Patient Choice Research Participation",
"status": "draft",
"date": "2022-12-21T11:27:52.3231281+00:00",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "like-to-discuss-later",
"display": "Patient would like to discuss at a later date"
},
{
"code": "patient-lack-capacity",
"display": "Patient lacks capacity and no consultee available"
},
{
"code": "inappropriate-to-discuss",
"display": "Inappropriate to have discussion"
},
{
"code": "other",
"display": "Other"
}
]
}

CodeSystem Reason for Testing Genomics

Usage

A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics defines the following codes:

LvlCodeDisplay
1primary-test-requestPrimary Test Request
2  carrierCarrier
2  diagnosticDiagnostic
2  disease-monitoring-mrdmechanismDisease Monitoring MRD CHIMERISM
2  dna-storageDNA Storage
2  follow-upFollow Up
2  predictivePredictive
2  relapseRelapse
2  staging-or-prognosisStaging or Prognosis
2  unknownUnknown
1reanalysis-test-requestReanalysis Test Request
2  change-in-presentationChange In Presentation
2  newly-affected-family-memberNewly Affected Family Member
2  new-pregnancyNew Pregnancy
2  new-treatment-clinical-managementNew Treatment/Clinical Management
2  recently-deceased-to-inform-familyRecently Deceased To Inform Family

Table View

CodeSystem.id[0]reasonfortesting-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics
CodeSystem.version[0]0.1.0
CodeSystem.name[0]ReasonforTestingGenomics
CodeSystem.title[0]Reason for Testing Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-07-09T00:00:00.000Z
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.description[0]A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]primary-test-request
CodeSystem.concept[0].display[0]Primary Test Request
CodeSystem.concept[0].concept[0].code[0]carrier
CodeSystem.concept[0].concept[0].display[0]Carrier
CodeSystem.concept[0].concept[1].code[0]diagnostic
CodeSystem.concept[0].concept[1].display[0]Diagnostic
CodeSystem.concept[0].concept[2].code[0]disease-monitoring-mrdmechanism
CodeSystem.concept[0].concept[2].display[0]Disease Monitoring MRD CHIMERISM
CodeSystem.concept[0].concept[3].code[0]dna-storage
CodeSystem.concept[0].concept[3].display[0]DNA Storage
CodeSystem.concept[0].concept[4].code[0]follow-up
CodeSystem.concept[0].concept[4].display[0]Follow Up
CodeSystem.concept[0].concept[5].code[0]predictive
CodeSystem.concept[0].concept[5].display[0]Predictive
CodeSystem.concept[0].concept[6].code[0]relapse
CodeSystem.concept[0].concept[6].display[0]Relapse
CodeSystem.concept[0].concept[7].code[0]staging-or-prognosis
CodeSystem.concept[0].concept[7].display[0]Staging or Prognosis
CodeSystem.concept[0].concept[8].code[0]unknown
CodeSystem.concept[0].concept[8].display[0]Unknown
CodeSystem.concept[1].code[0]reanalysis-test-request
CodeSystem.concept[1].display[0]Reanalysis Test Request
CodeSystem.concept[1].concept[0].code[0]change-in-presentation
CodeSystem.concept[1].concept[0].display[0]Change In Presentation
CodeSystem.concept[1].concept[1].code[0]newly-affected-family-member
CodeSystem.concept[1].concept[1].display[0]Newly Affected Family Member
CodeSystem.concept[1].concept[2].code[0]new-pregnancy
CodeSystem.concept[1].concept[2].display[0]New Pregnancy
CodeSystem.concept[1].concept[3].code[0]new-treatment-clinical-management
CodeSystem.concept[1].concept[3].display[0]New Treatment/Clinical Management
CodeSystem.concept[1].concept[4].code[0]recently-deceased-to-inform-family
CodeSystem.concept[1].concept[4].display[0]Recently Deceased To Inform Family

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="reasonfortesting-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics" />
<version value="0.1.0" />
<name value="ReasonforTestingGenomics" />
<title value="Reason for Testing Genomics" />
<status value="draft" />
<date value="2024-07-09T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="primary-test-request" />
<display value="Primary Test Request" />
<concept>
<code value="carrier" />
<display value="Carrier" />
</concept>
<concept>
<code value="diagnostic" />
<display value="Diagnostic" />
</concept>
<concept>
<code value="disease-monitoring-mrdmechanism" />
<display value="Disease Monitoring MRD CHIMERISM" />
</concept>
<concept>
<code value="dna-storage" />
<display value="DNA Storage" />
</concept>
<concept>
<code value="follow-up" />
<display value="Follow Up" />
</concept>
<concept>
<code value="predictive" />
<display value="Predictive" />
</concept>
<concept>
<code value="relapse" />
<display value="Relapse" />
</concept>
<concept>
<code value="staging-or-prognosis" />
<display value="Staging or Prognosis" />
</concept>
<concept>
<code value="unknown" />
<display value="Unknown" />
</concept>
</concept>
<concept>
<code value="reanalysis-test-request" />
<display value="Reanalysis Test Request" />
<concept>
<code value="change-in-presentation" />
<display value="Change In Presentation" />
</concept>
<concept>
<code value="newly-affected-family-member" />
<display value="Newly Affected Family Member" />
</concept>
<concept>
<code value="new-pregnancy" />
<display value="New Pregnancy" />
</concept>
<concept>
<code value="new-treatment-clinical-management" />
<display value="New Treatment/Clinical Management" />
</concept>
<concept>
<code value="recently-deceased-to-inform-family" />
<display value="Recently Deceased To Inform Family" />
</concept>
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "reasonfortesting-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
"version": "0.1.0",
"name": "ReasonforTestingGenomics",
"title": "Reason for Testing Genomics",
"status": "draft",
"date": "2024-07-09T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.category.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "primary-test-request",
"display": "Primary Test Request",
"concept": [
{
"code": "carrier",
"display": "Carrier"
},
{
"code": "diagnostic",
"display": "Diagnostic"
},
{
"code": "disease-monitoring-mrdmechanism",
"display": "Disease Monitoring MRD CHIMERISM"
},
{
"code": "dna-storage",
"display": "DNA Storage"
},
{
"code": "follow-up",
"display": "Follow Up"
},
{
"code": "predictive",
"display": "Predictive"
},
{
"code": "relapse",
"display": "Relapse"
},
{
"code": "staging-or-prognosis",
"display": "Staging or Prognosis"
},
{
"code": "unknown",
"display": "Unknown"
}
]
},
{
"code": "reanalysis-test-request",
"display": "Reanalysis Test Request",
"concept": [
{
"code": "change-in-presentation",
"display": "Change In Presentation"
},
{
"code": "newly-affected-family-member",
"display": "Newly Affected Family Member"
},
{
"code": "new-pregnancy",
"display": "New Pregnancy"
},
{
"code": "new-treatment-clinical-management",
"display": "New Treatment/Clinical Management"
},
{
"code": "recently-deceased-to-inform-family",
"display": "Recently Deceased To Inform Family"
}
]
}
]
}

CodeSystem Genomic Sample Category

Usage

A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory defines the following codes:

LvlCodeDisplay
1tumourTumour
2  solid-tumourSolid Tumour
2  liquid-tumourLiquid Tumour
1germlineGermline
1otherOther
1not-knownNot Known

Table View

CodeSystem.id[0]UKCore-SampleCategory
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory
CodeSystem.version[0]2.0.0
CodeSystem.name[0]UKCoreSampleCategory
CodeSystem.title[0]UK Core Sample Category
CodeSystem.status[0]active
CodeSystem.date[0]2024-08-05
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A CodeSystem to record the categorisation of a specimen.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.hierarchyMeaning[0]is-a
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]tumour
CodeSystem.concept[0].display[0]Tumour
CodeSystem.concept[0].concept[0].code[0]solid-tumour
CodeSystem.concept[0].concept[0].display[0]Solid Tumour
CodeSystem.concept[0].concept[1].code[0]liquid-tumour
CodeSystem.concept[0].concept[1].display[0]Liquid Tumour
CodeSystem.concept[1].code[0]germline
CodeSystem.concept[1].display[0]Germline
CodeSystem.concept[2].code[0]other
CodeSystem.concept[2].display[0]Other
CodeSystem.concept[3].code[0]not-known
CodeSystem.concept[3].display[0]Not Known

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-SampleCategory" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<version value="2.0.0" />
<name value="UKCoreSampleCategory" />
<title value="UK Core Sample Category" />
<status value="active" />
<date value="2024-08-05" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A CodeSystem to record the categorisation of a specimen." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<hierarchyMeaning value="is-a" />
<content value="complete" />
<concept>
<code value="tumour" />
<display value="Tumour" />
<concept>
<code value="solid-tumour" />
<display value="Solid Tumour" />
</concept>
<concept>
<code value="liquid-tumour" />
<display value="Liquid Tumour" />
</concept>
</concept>
<concept>
<code value="germline" />
<display value="Germline" />
</concept>
<concept>
<code value="other" />
<display value="Other" />
</concept>
<concept>
<code value="not-known" />
<display value="Not Known" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-SampleCategory",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"version": "2.0.0",
"name": "UKCoreSampleCategory",
"title": "UK Core Sample Category",
"status": "active",
"date": "2024-08-05",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A CodeSystem to record the categorisation of a specimen.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"hierarchyMeaning": "is-a",
"content": "complete",
"concept": [
{
"code": "tumour",
"display": "Tumour",
"concept": [
{
"code": "solid-tumour",
"display": "Solid Tumour"
},
{
"code": "liquid-tumour",
"display": "Liquid Tumour"
}
]
},
{
"code": "germline",
"display": "Germline"
},
{
"code": "other",
"display": "Other"
},
{
"code": "not-known",
"display": "Not Known"
}
]
}

CodeSystem Specimen Collection Special Handling Genomics

Usage

A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element.

ription:description

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics defines the following codes:

CodeDisplay
sensitive-incinerationSensitive Incineration
cremationCremation
return-to-patientReturn To Patient

Table View

CodeSystem.id[0]specimen-collection-specialhandling-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics
CodeSystem.version[0]0.1.0
CodeSystem.name[0]SpecimenCollectionSpecialHandlingGenomics
CodeSystem.title[0]Specimen Collection Special Handling Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-08-05T00:00:00.000Z
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.description[0]A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]sensitive-incineration
CodeSystem.concept[0].display[0]Sensitive Incineration
CodeSystem.concept[1].code[0]cremation
CodeSystem.concept[1].display[0]Cremation
CodeSystem.concept[2].code[0]return-to-patient
CodeSystem.concept[2].display[0]Return To Patient

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="specimen-collection-specialhandling-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics" />
<version value="0.1.0" />
<name value="SpecimenCollectionSpecialHandlingGenomics" />
<title value="Specimen Collection Special Handling Genomics" />
<status value="draft" />
<date value="2024-08-05T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="sensitive-incineration" />
<display value="Sensitive Incineration" />
</concept>
<concept>
<code value="cremation" />
<display value="Cremation" />
</concept>
<concept>
<code value="return-to-patient" />
<display value="Return To Patient" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "specimen-collection-specialhandling-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics",
"version": "0.1.0",
"name": "SpecimenCollectionSpecialHandlingGenomics",
"title": "Specimen Collection Special Handling Genomics",
"status": "draft",
"date": "2024-08-05T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "sensitive-incineration",
"display": "Sensitive Incineration"
},
{
"code": "cremation",
"display": "Cremation"
},
{
"code": "return-to-patient",
"display": "Return To Patient"
}
]
}

CodeSystem Task Code Genomics

Usage

A set of codes use to identify the type of task for Genomic Order Management

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/task-code-genomics defines the following codes:

CodeDisplay
process-genomic-test-requestProcess Genomic Test Request
request-sample-alignmentRequest & Sample Alignment
sample-preparationSample Preparation
sample-processingSample Processing
genetic-genomic-data-processingGenetic/Genomic Data Processing
interpretationInterpretation
produce-interim-reportProduce Interim Report
genomic-mdtGenomic MDT
produce-final-reportProduce Final Report
distribute-reportDistribute Report

Table View

CodeSystem.id[0]task-code-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/task-code-genomics
CodeSystem.version[0]0.3.0
CodeSystem.name[0]TaskCodeGenomics
CodeSystem.title[0]Task Code Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-02-28T15:33:00+00:00
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]A set of codes use to identify the type of task for Genomic Order Management
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]process-genomic-test-request
CodeSystem.concept[0].display[0]Process Genomic Test Request
CodeSystem.concept[0].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[0].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[0].designation[0].use[0].display[0]Synonym
CodeSystem.concept[0].designation[0].value[0]50.00
CodeSystem.concept[1].code[0]request-sample-alignment
CodeSystem.concept[1].display[0]Request & Sample Alignment
CodeSystem.concept[1].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[1].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[1].designation[0].use[0].display[0]Synonym
CodeSystem.concept[1].designation[0].value[0]100.00
CodeSystem.concept[2].code[0]sample-preparation
CodeSystem.concept[2].display[0]Sample Preparation
CodeSystem.concept[2].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[2].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[2].designation[0].use[0].display[0]Synonym
CodeSystem.concept[2].designation[0].value[0]150.00
CodeSystem.concept[3].code[0]sample-processing
CodeSystem.concept[3].display[0]Sample Processing
CodeSystem.concept[3].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[3].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[3].designation[0].use[0].display[0]Synonym
CodeSystem.concept[3].designation[0].value[0]200.00
CodeSystem.concept[4].code[0]genetic-genomic-data-processing
CodeSystem.concept[4].display[0]Genetic/Genomic Data Processing
CodeSystem.concept[4].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[4].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[4].designation[0].use[0].display[0]Synonym
CodeSystem.concept[4].designation[0].value[0]250.00
CodeSystem.concept[5].code[0]interpretation
CodeSystem.concept[5].display[0]Interpretation
CodeSystem.concept[5].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[5].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[5].designation[0].use[0].display[0]Synonym
CodeSystem.concept[5].designation[0].value[0]300.00
CodeSystem.concept[6].code[0]produce-interim-report
CodeSystem.concept[6].display[0]Produce Interim Report
CodeSystem.concept[6].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[6].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[6].designation[0].use[0].display[0]Synonym
CodeSystem.concept[6].designation[0].value[0]350.00
CodeSystem.concept[7].code[0]genomic-mdt
CodeSystem.concept[7].display[0]Genomic MDT
CodeSystem.concept[7].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[7].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[7].designation[0].use[0].display[0]Synonym
CodeSystem.concept[7].designation[0].value[0]400.00
CodeSystem.concept[8].code[0]produce-final-report
CodeSystem.concept[8].display[0]Produce Final Report
CodeSystem.concept[8].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[8].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[8].designation[0].use[0].display[0]Synonym
CodeSystem.concept[8].designation[0].value[0]450.00
CodeSystem.concept[9].code[0]distribute-report
CodeSystem.concept[9].display[0]Distribute Report
CodeSystem.concept[9].designation[0].use[0].system[0]http://snomed.info/sct
CodeSystem.concept[9].designation[0].use[0].code[0]900000000000013009
CodeSystem.concept[9].designation[0].use[0].display[0]Synonym
CodeSystem.concept[9].designation[0].value[0]500.00

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="task-code-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/task-code-genomics" />
<version value="0.3.0" />
<name value="TaskCodeGenomics" />
<title value="Task Code Genomics" />
<status value="draft" />
<date value="2024-02-28T15:33:00+00:00" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="A set of codes use to identify the type of task for Genomic Order Management" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="process-genomic-test-request" />
<display value="Process Genomic Test Request" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="50.00" />
</designation>
</concept>
<concept>
<code value="request-sample-alignment" />
<display value="Request & Sample Alignment" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="100.00" />
</designation>
</concept>
<concept>
<code value="sample-preparation" />
<display value="Sample Preparation" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="150.00" />
</designation>
</concept>
<concept>
<code value="sample-processing" />
<display value="Sample Processing" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="200.00" />
</designation>
</concept>
<concept>
<code value="genetic-genomic-data-processing" />
<display value="Genetic/Genomic Data Processing" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="250.00" />
</designation>
</concept>
<concept>
<code value="interpretation" />
<display value="Interpretation" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="300.00" />
</designation>
</concept>
<concept>
<code value="produce-interim-report" />
<display value="Produce Interim Report" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="350.00" />
</designation>
</concept>
<concept>
<code value="genomic-mdt" />
<display value="Genomic MDT" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="400.00" />
</designation>
</concept>
<concept>
<code value="produce-final-report" />
<display value="Produce Final Report" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="450.00" />
</designation>
</concept>
<concept>
<code value="distribute-report" />
<display value="Distribute Report" />
<designation>
<use>
<system value="http://snomed.info/sct" />
<code value="900000000000013009" />
<display value="Synonym" />
</use>
<value value="500.00" />
</designation>
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "task-code-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
"version": "0.3.0",
"name": "TaskCodeGenomics",
"title": "Task Code Genomics",
"status": "draft",
"date": "2024-02-28T15:33:00+00:00",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "A set of codes use to identify the type of task for Genomic Order Management",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "process-genomic-test-request",
"display": "Process Genomic Test Request",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "50.00"
}
]
},
{
"code": "request-sample-alignment",
"display": "Request & Sample Alignment",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "100.00"
}
]
},
{
"code": "sample-preparation",
"display": "Sample Preparation",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "150.00"
}
]
},
{
"code": "sample-processing",
"display": "Sample Processing",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "200.00"
}
]
},
{
"code": "genetic-genomic-data-processing",
"display": "Genetic/Genomic Data Processing",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "250.00"
}
]
},
{
"code": "interpretation",
"display": "Interpretation",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "300.00"
}
]
},
{
"code": "produce-interim-report",
"display": "Produce Interim Report",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "350.00"
}
]
},
{
"code": "genomic-mdt",
"display": "Genomic MDT",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "400.00"
}
]
},
{
"code": "produce-final-report",
"display": "Produce Final Report",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "450.00"
}
]
},
{
"code": "distribute-report",
"display": "Distribute Report",
"designation": [
{
"use": {
"system": "http://snomed.info/sct",
"code": "900000000000013009",
"display": "Synonym"
},
"value": "500.00"
}
]
}
]
}

CodeSystem Task Status Reason Genomics

Usage

Status reasons for Tasks in genomics

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics defines the following codes:

CodeDisplay
further-information-neededFurther Information Needed
awaiting-sampleAwaiting Sample
awaiting-rod-and-or-sampleAwaiting Record of Discussion and/or Sample
invalid-requestInvalid Request
pipeline-errorPipeline Error
time-for-task-exceededTime For Task Exceeded
unable-to-interpretUnable To Interpret
sample-sub-optimalSample Sub-Optimal
task-no-longer-requiredTask No Longer Required
no-sample-providedNo Sample Provided
scheduled-delayScheduled Delay
awaiting-order-detailAwaiting Order Detail
otherother

Table View

CodeSystem.id[0]task-statusReason-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics
CodeSystem.version[0]0.3.1
CodeSystem.name[0]TaskStatusReasonGenomics
CodeSystem.title[0]Task StatusReason Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-07-23
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.description[0]Status reasons for Tasks in genomics
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]further-information-needed
CodeSystem.concept[0].display[0]Further Information Needed
CodeSystem.concept[1].code[0]awaiting-sample
CodeSystem.concept[1].display[0]Awaiting Sample
CodeSystem.concept[2].code[0]awaiting-rod-and-or-sample
CodeSystem.concept[2].display[0]Awaiting Record of Discussion and/or Sample
CodeSystem.concept[3].code[0]invalid-request
CodeSystem.concept[3].display[0]Invalid Request
CodeSystem.concept[4].code[0]pipeline-error
CodeSystem.concept[4].display[0]Pipeline Error
CodeSystem.concept[5].code[0]time-for-task-exceeded
CodeSystem.concept[5].display[0]Time For Task Exceeded
CodeSystem.concept[6].code[0]unable-to-interpret
CodeSystem.concept[6].display[0]Unable To Interpret
CodeSystem.concept[7].code[0]sample-sub-optimal
CodeSystem.concept[7].display[0]Sample Sub-Optimal
CodeSystem.concept[8].code[0]task-no-longer-required
CodeSystem.concept[8].display[0]Task No Longer Required
CodeSystem.concept[9].code[0]no-sample-provided
CodeSystem.concept[9].display[0]No Sample Provided
CodeSystem.concept[10].code[0]scheduled-delay
CodeSystem.concept[10].display[0]Scheduled Delay
CodeSystem.concept[11].code[0]awaiting-order-detail
CodeSystem.concept[11].display[0]Awaiting Order Detail
CodeSystem.concept[12].code[0]other
CodeSystem.concept[12].display[0]other

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="task-statusReason-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics" />
<version value="0.3.1" />
<name value="TaskStatusReasonGenomics" />
<title value="Task StatusReason Genomics" />
<status value="draft" />
<date value="2024-07-23" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
<use value="work" />
</telecom>
</contact>
<description value="Status reasons for Tasks in genomics" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="further-information-needed" />
<display value="Further Information Needed" />
</concept>
<concept>
<code value="awaiting-sample" />
<display value="Awaiting Sample" />
</concept>
<concept>
<code value="awaiting-rod-and-or-sample" />
<display value="Awaiting Record of Discussion and/or Sample" />
</concept>
<concept>
<code value="invalid-request" />
<display value="Invalid Request" />
</concept>
<concept>
<code value="pipeline-error" />
<display value="Pipeline Error" />
</concept>
<concept>
<code value="time-for-task-exceeded" />
<display value="Time For Task Exceeded" />
</concept>
<concept>
<code value="unable-to-interpret" />
<display value="Unable To Interpret" />
</concept>
<concept>
<code value="sample-sub-optimal" />
<display value="Sample Sub-Optimal" />
</concept>
<concept>
<code value="task-no-longer-required" />
<display value="Task No Longer Required" />
</concept>
<concept>
<code value="no-sample-provided" />
<display value="No Sample Provided" />
</concept>
<concept>
<code value="scheduled-delay" />
<display value="Scheduled Delay" />
</concept>
<concept>
<code value="awaiting-order-detail" />
<display value="Awaiting Order Detail" />
</concept>
<concept>
<code value="other" />
<display value="other" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "task-statusReason-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics",
"version": "0.3.1",
"name": "TaskStatusReasonGenomics",
"title": "Task StatusReason Genomics",
"status": "draft",
"date": "2024-07-23",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net",
"use": "work"
}
]
}
],
"description": "Status reasons for Tasks in genomics",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "further-information-needed",
"display": "Further Information Needed"
},
{
"code": "awaiting-sample",
"display": "Awaiting Sample"
},
{
"code": "awaiting-rod-and-or-sample",
"display": "Awaiting Record of Discussion and/or Sample"
},
{
"code": "invalid-request",
"display": "Invalid Request"
},
{
"code": "pipeline-error",
"display": "Pipeline Error"
},
{
"code": "time-for-task-exceeded",
"display": "Time For Task Exceeded"
},
{
"code": "unable-to-interpret",
"display": "Unable To Interpret"
},
{
"code": "sample-sub-optimal",
"display": "Sample Sub-Optimal"
},
{
"code": "task-no-longer-required",
"display": "Task No Longer Required"
},
{
"code": "no-sample-provided",
"display": "No Sample Provided"
},
{
"code": "scheduled-delay",
"display": "Scheduled Delay"
},
{
"code": "awaiting-order-detail",
"display": "Awaiting Order Detail"
},
{
"code": "other",
"display": "other"
}
]
}

CodeSystem Genomic Coverage

Usage

A set of codes that define the funding category for a patient.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory defines the following codes:

LvlCodeDisplay
1publicPublic
2  nhs-englandNHS England
2  nhs-scotlandNHS Scotland
2  nhs-walesNHS Wales
2  hsc-northern-irelandHSC Northern Ireland
2  jerseyJersey
2  guernseyGuernsey
2  isle-of-manIsle of Man
2  overseas-visitorOverseas Visitor
1privatePrivate

Table View

CodeSystem.id[0]UKCore-FundingCategory
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory
CodeSystem.version[0]2.0.0
CodeSystem.name[0]UKCoreFundingCategory
CodeSystem.title[0]UK Core Funding Category
CodeSystem.status[0]active
CodeSystem.date[0]2024-06-14
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A set of codes that define the funding category for a patient.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.hierarchyMeaning[0]is-a
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]public
CodeSystem.concept[0].display[0]Public
CodeSystem.concept[0].concept[0].code[0]nhs-england
CodeSystem.concept[0].concept[0].display[0]NHS England
CodeSystem.concept[0].concept[1].code[0]nhs-scotland
CodeSystem.concept[0].concept[1].display[0]NHS Scotland
CodeSystem.concept[0].concept[2].code[0]nhs-wales
CodeSystem.concept[0].concept[2].display[0]NHS Wales
CodeSystem.concept[0].concept[3].code[0]hsc-northern-ireland
CodeSystem.concept[0].concept[3].display[0]HSC Northern Ireland
CodeSystem.concept[0].concept[4].code[0]jersey
CodeSystem.concept[0].concept[4].display[0]Jersey
CodeSystem.concept[0].concept[5].code[0]guernsey
CodeSystem.concept[0].concept[5].display[0]Guernsey
CodeSystem.concept[0].concept[6].code[0]isle-of-man
CodeSystem.concept[0].concept[6].display[0]Isle of Man
CodeSystem.concept[0].concept[7].code[0]overseas-visitor
CodeSystem.concept[0].concept[7].display[0]Overseas Visitor
CodeSystem.concept[1].code[0]private
CodeSystem.concept[1].display[0]Private

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-FundingCategory" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory" />
<version value="2.0.0" />
<name value="UKCoreFundingCategory" />
<title value="UK Core Funding Category" />
<status value="active" />
<date value="2024-06-14" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A set of codes that define the funding category for a patient." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<hierarchyMeaning value="is-a" />
<content value="complete" />
<concept>
<code value="public" />
<display value="Public" />
<concept>
<code value="nhs-england" />
<display value="NHS England" />
</concept>
<concept>
<code value="nhs-scotland" />
<display value="NHS Scotland" />
</concept>
<concept>
<code value="nhs-wales" />
<display value="NHS Wales" />
</concept>
<concept>
<code value="hsc-northern-ireland" />
<display value="HSC Northern Ireland" />
</concept>
<concept>
<code value="jersey" />
<display value="Jersey" />
</concept>
<concept>
<code value="guernsey" />
<display value="Guernsey" />
</concept>
<concept>
<code value="isle-of-man" />
<display value="Isle of Man" />
</concept>
<concept>
<code value="overseas-visitor" />
<display value="Overseas Visitor" />
</concept>
</concept>
<concept>
<code value="private" />
<display value="Private" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-FundingCategory",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory",
"version": "2.0.0",
"name": "UKCoreFundingCategory",
"title": "UK Core Funding Category",
"status": "active",
"date": "2024-06-14",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A set of codes that define the funding category for a patient.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"hierarchyMeaning": "is-a",
"content": "complete",
"concept": [
{
"code": "public",
"display": "Public",
"concept": [
{
"code": "nhs-england",
"display": "NHS England"
},
{
"code": "nhs-scotland",
"display": "NHS Scotland"
},
{
"code": "nhs-wales",
"display": "NHS Wales"
},
{
"code": "hsc-northern-ireland",
"display": "HSC Northern Ireland"
},
{
"code": "jersey",
"display": "Jersey"
},
{
"code": "guernsey",
"display": "Guernsey"
},
{
"code": "isle-of-man",
"display": "Isle of Man"
},
{
"code": "overseas-visitor",
"display": "Overseas Visitor"
}
]
},
{
"code": "private",
"display": "Private"
}
]
}

CodeSystem Genomic NHSNumber Unavailable Reason

Usage

A set of concepts that define the reason that an NHS number is not available for use as an identifier.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberUnavailableReason defines the following codes:

CodeDisplay
nhs-number-not-knownNHS number not known
overseas-patientOverseas patient
devolved-nationDevolved nation

Table View

CodeSystem.id[0]UKCore-NHSNumberUnavailableReason
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberUnavailableReason
CodeSystem.version[0]1.0.0
CodeSystem.name[0]UKCoreNHSNumberUnavailableReason
CodeSystem.title[0]UK Core NHS Number Unavailable Reason
CodeSystem.status[0]active
CodeSystem.date[0]2023-04-28
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A set of concepts that define the reason that an NHS number is not available for use as an identifier.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]nhs-number-not-known
CodeSystem.concept[0].display[0]NHS number not known
CodeSystem.concept[1].code[0]overseas-patient
CodeSystem.concept[1].display[0]Overseas patient
CodeSystem.concept[2].code[0]devolved-nation
CodeSystem.concept[2].display[0]Devolved nation

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-NHSNumberUnavailableReason" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberUnavailableReason" />
<version value="1.0.0" />
<name value="UKCoreNHSNumberUnavailableReason" />
<title value="UK Core NHS Number Unavailable Reason" />
<status value="active" />
<date value="2023-04-28" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A set of concepts that define the reason that an NHS number is not available for use as an identifier." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="nhs-number-not-known" />
<display value="NHS number not known" />
</concept>
<concept>
<code value="overseas-patient" />
<display value="Overseas patient" />
</concept>
<concept>
<code value="devolved-nation" />
<display value="Devolved nation" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-NHSNumberUnavailableReason",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberUnavailableReason",
"version": "1.0.0",
"name": "UKCoreNHSNumberUnavailableReason",
"title": "UK Core NHS Number Unavailable Reason",
"status": "active",
"date": "2023-04-28",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A set of concepts that define the reason that an NHS number is not available for use as an identifier.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "nhs-number-not-known",
"display": "NHS number not known"
},
{
"code": "overseas-patient",
"display": "Overseas patient"
},
{
"code": "devolved-nation",
"display": "Devolved nation"
}
]
}

CodeSystem Genomic Organization Type

Usage

A set of codes to define additional genomic lab concepts for an organisation type.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-OrganizationTypeGenomics defines the following codes:

CodeDisplay
GLHGenomic Lab Hub
GELGenomics England
LABOther Genomics Laboratory

Table View

CodeSystem.id[0]UKCore-OrganizationTypeGenomics
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-OrganizationTypeGenomics
CodeSystem.version[0]1.0.0
CodeSystem.name[0]UKCoreOrganizationTypeGenomics
CodeSystem.title[0]UK Core Organization Type Genomics
CodeSystem.status[0]active
CodeSystem.date[0]2023-04-28
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A set of codes to define additional genomic lab concepts for an organisation type.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]GLH
CodeSystem.concept[0].display[0]Genomic Lab Hub
CodeSystem.concept[1].code[0]GEL
CodeSystem.concept[1].display[0]Genomics England
CodeSystem.concept[2].code[0]LAB
CodeSystem.concept[2].display[0]Other Genomics Laboratory

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-OrganizationTypeGenomics" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-OrganizationTypeGenomics" />
<version value="1.0.0" />
<name value="UKCoreOrganizationTypeGenomics" />
<title value="UK Core Organization Type Genomics" />
<status value="active" />
<date value="2023-04-28" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A set of codes to define additional genomic lab concepts for an organisation type." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="GLH" />
<display value="Genomic Lab Hub" />
</concept>
<concept>
<code value="GEL" />
<display value="Genomics England" />
</concept>
<concept>
<code value="LAB" />
<display value="Other Genomics Laboratory" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-OrganizationTypeGenomics",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-OrganizationTypeGenomics",
"version": "1.0.0",
"name": "UKCoreOrganizationTypeGenomics",
"title": "UK Core Organization Type Genomics",
"status": "active",
"date": "2023-04-28",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A set of codes to define additional genomic lab concepts for an organisation type.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "GLH",
"display": "Genomic Lab Hub"
},
{
"code": "GEL",
"display": "Genomics England"
},
{
"code": "LAB",
"display": "Other Genomics Laboratory"
}
]
}

CodeSystem Genomic Primary Sample State

Usage

A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState defines the following codes:

CodeDisplayDefinition
blood-spotBlood spot
FFPEFormalin-fixed paraffin-embedded
freshFresh
otherOtherAny other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text.

Table View

CodeSystem.id[0]UKCore-PrimarySampleState
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState
CodeSystem.version[0]2.0.0
CodeSystem.name[0]UKCorePrimarySampleState
CodeSystem.title[0]UK Core Primary Sample State
CodeSystem.status[0]active
CodeSystem.date[0]2024-11-08
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]blood-spot
CodeSystem.concept[0].display[0]Blood spot
CodeSystem.concept[1].code[0]FFPE
CodeSystem.concept[1].display[0]Formalin-fixed paraffin-embedded
CodeSystem.concept[2].code[0]fresh
CodeSystem.concept[2].display[0]Fresh
CodeSystem.concept[3].code[0]other
CodeSystem.concept[3].display[0]Other
CodeSystem.concept[3].definition[0]Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text.

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-PrimarySampleState" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
<version value="2.0.0" />
<name value="UKCorePrimarySampleState" />
<title value="UK Core Primary Sample State" />
<status value="active" />
<date value="2024-11-08" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="blood-spot" />
<display value="Blood spot" />
</concept>
<concept>
<code value="FFPE" />
<display value="Formalin-fixed paraffin-embedded" />
</concept>
<concept>
<code value="fresh" />
<display value="Fresh" />
</concept>
<concept>
<code value="other" />
<display value="Other" />
<definition value="Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text." />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-PrimarySampleState",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
"version": "2.0.0",
"name": "UKCorePrimarySampleState",
"title": "UK Core Primary Sample State",
"status": "active",
"date": "2024-11-08",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "blood-spot",
"display": "Blood spot"
},
{
"code": "FFPE",
"display": "Formalin-fixed paraffin-embedded"
},
{
"code": "fresh",
"display": "Fresh"
},
{
"code": "other",
"display": "Other",
"definition": "Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text."
}
]
}

CodeSystem Genomic Test Types

Usage

A CodeSystem to categorise if the service request is for Whole Genome Sequencing (WGS)/non-WGS Rare Disease/Cancer.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory defines the following codes:

CodeDisplay
rare-disease-wgsRare Disease - WGS
rare-disease-non-wgsRare Disease - Non-WGS
cancer-wgsCancer - WGS
cancer-non-wgsCancer - Non-WGS

Table View

CodeSystem.id[0]UKCore-GenomeSequencingCategory
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory
CodeSystem.version[0]1.0.0
CodeSystem.name[0]UKCoreGenomeSequencingCategory
CodeSystem.title[0]UK Core Genome Sequencing Category
CodeSystem.status[0]active
CodeSystem.date[0]2023-04-28
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A CodeSystem to categorise if the service request is for Whole Genome Sequencing (WGS)/non-WGS Rare Disease/Cancer.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]rare-disease-wgs
CodeSystem.concept[0].display[0]Rare Disease - WGS
CodeSystem.concept[1].code[0]rare-disease-non-wgs
CodeSystem.concept[1].display[0]Rare Disease - Non-WGS
CodeSystem.concept[2].code[0]cancer-wgs
CodeSystem.concept[2].display[0]Cancer - WGS
CodeSystem.concept[3].code[0]cancer-non-wgs
CodeSystem.concept[3].display[0]Cancer - Non-WGS

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-GenomeSequencingCategory" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory" />
<version value="1.0.0" />
<name value="UKCoreGenomeSequencingCategory" />
<title value="UK Core Genome Sequencing Category" />
<status value="active" />
<date value="2023-04-28" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A CodeSystem to categorise if the service request is for Whole Genome Sequencing (WGS)/non-WGS Rare Disease/Cancer." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="rare-disease-wgs" />
<display value="Rare Disease - WGS" />
</concept>
<concept>
<code value="rare-disease-non-wgs" />
<display value="Rare Disease - Non-WGS" />
</concept>
<concept>
<code value="cancer-wgs" />
<display value="Cancer - WGS" />
</concept>
<concept>
<code value="cancer-non-wgs" />
<display value="Cancer - Non-WGS" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-GenomeSequencingCategory",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory",
"version": "1.0.0",
"name": "UKCoreGenomeSequencingCategory",
"title": "UK Core Genome Sequencing Category",
"status": "active",
"date": "2023-04-28",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A CodeSystem to categorise if the service request is for Whole Genome Sequencing (WGS)/non-WGS Rare Disease/Cancer.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "rare-disease-wgs",
"display": "Rare Disease - WGS"
},
{
"code": "rare-disease-non-wgs",
"display": "Rare Disease - Non-WGS"
},
{
"code": "cancer-wgs",
"display": "Cancer - WGS"
},
{
"code": "cancer-non-wgs",
"display": "Cancer - Non-WGS"
}
]
}

CodeSystem Types of Re-Analysis Test Genomics

Usage

A set of codes use to identify the types of re-analysis test request in genomics.This is intended to be used on ServiceRequest.orderDetail element.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/types-of-reanalysistest-genomics defines the following codes:

CodeDisplay
original-gene-panelsOriginal Gene Panels
change-in-penetrance-settingChange in Penetrance Setting
new-gene panel-analysisNew Gene Panel Analysis
change-in-affection-status-of-family-memberChange in Affection Status of Family Member

Table View

CodeSystem.id[0]types-of-reanalysistest-genomics
CodeSystem.url[0]https://fhir.nhs.uk/CodeSystem/types-of-reanalysistest-genomics
CodeSystem.version[0]0.1.0
CodeSystem.name[0]TypesofReAnalysisTestGenomics
CodeSystem.title[0]Types of Re-Analysis Test Genomics
CodeSystem.status[0]draft
CodeSystem.date[0]2024-07-09T00:00:00.000Z
CodeSystem.publisher[0]NHS England
CodeSystem.contact[0].name[0]NHS England
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
CodeSystem.description[0]A set of codes use to identify the types of re-analysis test request in genomics.This is intended to be used on ServiceRequest.orderDetail element.
CodeSystem.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]original-gene-panels
CodeSystem.concept[0].display[0]Original Gene Panels
CodeSystem.concept[1].code[0]change-in-penetrance-setting
CodeSystem.concept[1].display[0]Change in Penetrance Setting
CodeSystem.concept[2].code[0]new-gene panel-analysis
CodeSystem.concept[2].display[0]New Gene Panel Analysis
CodeSystem.concept[3].code[0]change-in-affection-status-of-family-member
CodeSystem.concept[3].display[0]Change in Affection Status of Family Member

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="types-of-reanalysistest-genomics" />
<url value="https://fhir.nhs.uk/CodeSystem/types-of-reanalysistest-genomics" />
<version value="0.1.0" />
<name value="TypesofReAnalysisTestGenomics" />
<title value="Types of Re-Analysis Test Genomics" />
<status value="draft" />
<date value="2024-07-09T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A set of codes use to identify the types of re-analysis test request in genomics.This is intended to be used on ServiceRequest.orderDetail element." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<concept>
<code value="original-gene-panels" />
<display value="Original Gene Panels" />
</concept>
<concept>
<code value="change-in-penetrance-setting" />
<display value="Change in Penetrance Setting" />
</concept>
<concept>
<code value="new-gene panel-analysis" />
<display value="New Gene Panel Analysis" />
</concept>
<concept>
<code value="change-in-affection-status-of-family-member" />
<display value="Change in Affection Status of Family Member" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "types-of-reanalysistest-genomics",
"url": "https://fhir.nhs.uk/CodeSystem/types-of-reanalysistest-genomics",
"version": "0.1.0",
"name": "TypesofReAnalysisTestGenomics",
"title": "Types of Re-Analysis Test Genomics",
"status": "draft",
"date": "2024-07-09T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A set of codes use to identify the types of re-analysis test request in genomics.This is intended to be used on ServiceRequest.orderDetail element.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"concept": [
{
"code": "original-gene-panels",
"display": "Original Gene Panels"
},
{
"code": "change-in-penetrance-setting",
"display": "Change in Penetrance Setting"
},
{
"code": "new-gene panel-analysis",
"display": "New Gene Panel Analysis"
},
{
"code": "change-in-affection-status-of-family-member",
"display": "Change in Affection Status of Family Member"
}
]
}

CodeSystem Genomic Withheld Identity Reason

Usage

A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.

HTML View

Concepts

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-WithheldIdentityReason defines the following codes:

CodeDisplay
01Record anonymised for legal/statutory reasons
02Record anonymised at request of Caldicott Guardian
03Record anonymised at request of Patient
97Record anonymised for other reason
99Identity withheld but reason not known

Table View

CodeSystem.id[0]UKCore-WithheldIdentityReason
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-WithheldIdentityReason
CodeSystem.version[0]0.0.1
CodeSystem.name[0]UKCoreWithheldIdentityReason
CodeSystem.title[0]UK Core Withheld Identity Reason
CodeSystem.status[0]draft
CodeSystem.date[0]2024-06-14
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A set of codes that define the valid reason for which a record has been purposely anonymised. These codes and their descriptions are copied from the content of the [NHS Data Model and Dictionary](https://www.datadictionary.nhs.uk/data_elements/withheld_identity_reason.html) web page on 2024-06-14.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.count[0]5
CodeSystem.concept[0].code[0]01
CodeSystem.concept[0].display[0]Record anonymised for legal/statutory reasons
CodeSystem.concept[1].code[0]02
CodeSystem.concept[1].display[0]Record anonymised at request of Caldicott Guardian
CodeSystem.concept[2].code[0]03
CodeSystem.concept[2].display[0]Record anonymised at request of Patient
CodeSystem.concept[3].code[0]97
CodeSystem.concept[3].display[0]Record anonymised for other reason
CodeSystem.concept[4].code[0]99
CodeSystem.concept[4].display[0]Identity withheld but reason not known

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
<id value="UKCore-WithheldIdentityReason" />
<url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-WithheldIdentityReason" />
<version value="0.0.1" />
<name value="UKCoreWithheldIdentityReason" />
<title value="UK Core Withheld Identity Reason" />
<status value="draft" />
<date value="2024-06-14" />
<publisher value="HL7 UK" />
<contact>
<name value="HL7 UK" />
<telecom>
<system value="email" />
<value value="ukcore@hl7.org.uk" />
<use value="work" />
<rank value="1" />
</telecom>
</contact>
<description value="A set of codes that define the valid reason for which a record has been purposely anonymised. These codes and their descriptions are copied from the content of the [NHS Data Model and Dictionary](https://www.datadictionary.nhs.uk/data_elements/withheld_identity_reason.html) web page on 2024-06-14." />
<copyright value="Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<caseSensitive value="true" />
<content value="complete" />
<count value="5" />
<concept>
<code value="01" />
<display value="Record anonymised for legal/statutory reasons" />
</concept>
<concept>
<code value="02" />
<display value="Record anonymised at request of Caldicott Guardian" />
</concept>
<concept>
<code value="03" />
<display value="Record anonymised at request of Patient" />
</concept>
<concept>
<code value="97" />
<display value="Record anonymised for other reason" />
</concept>
<concept>
<code value="99" />
<display value="Identity withheld but reason not known" />
</concept>
</CodeSystem>

JSON View

{
"resourceType": "CodeSystem",
"id": "UKCore-WithheldIdentityReason",
"url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-WithheldIdentityReason",
"version": "0.0.1",
"name": "UKCoreWithheldIdentityReason",
"title": "UK Core Withheld Identity Reason",
"status": "draft",
"date": "2024-06-14",
"publisher": "HL7 UK",
"contact": [
{
"name": "HL7 UK",
"telecom": [
{
"system": "email",
"value": "ukcore@hl7.org.uk",
"use": "work",
"rank": 1
}
]
}
],
"description": "A set of codes that define the valid reason for which a record has been purposely anonymised. These codes and their descriptions are copied from the content of the [NHS Data Model and Dictionary](https://www.datadictionary.nhs.uk/data_elements/withheld_identity_reason.html) web page on 2024-06-14.",
"copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"caseSensitive": true,
"content": "complete",
"count": 5,
"concept": [
{
"code": "01",
"display": "Record anonymised for legal/statutory reasons"
},
{
"code": "02",
"display": "Record anonymised at request of Caldicott Guardian"
},
{
"code": "03",
"display": "Record anonymised at request of Patient"
},
{
"code": "97",
"display": "Record anonymised for other reason"
},
{
"code": "99",
"display": "Identity withheld but reason not known"
}
]
}