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XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="additional-infotype-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics" />
    <version value="0.1.0" />
    <name value="AdditionalInfoTypeGenomics" />
    <title value="Additional Information Type Genomics" />
    <status value="draft" />
    <date value="2024-05-31T00:00:00.000Z" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
        </telecom>
    </contact>
    <description value="CodeSystem to specify reference to additional details of the input&#39;s use as part of the task execution or the output generated from task completion." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="Consent" />
        <display value="Consent" />
        <definition value="Consent for treatment record" />
    </concept>
    <concept>
        <code value="ConsignmentNumber" />
        <display value="Consignment Number" />
        <definition value="The specimen consignment number" />
    </concept>
    <concept>
        <code value="DiagnosticReport" />
        <display value="DiagnosticReport" />
        <definition value="The DiagnosticReport generated upon the task completion" />
    </concept>
    <concept>
        <code value="RackId" />
        <display value="Rack Number" />
        <definition value="The specimen rack number" />
    </concept>
    <concept>
        <code value="Specimen" />
        <display value="Specimen" />
        <definition value="The specimen provided for the task execution" />
    </concept>
    <concept>
        <code value="WellId" />
        <display value="Well Identification Number" />
        <definition value="The specimen well identification number" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "additional-infotype-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/additional-infotype-genomics",
    "version": "0.1.0",
    "name": "AdditionalInfoTypeGenomics",
    "title": "Additional Information Type Genomics",
    "status": "draft",
    "date": "2024-05-31T00:00:00.000Z",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net"
                }
            ]
        }
    ],
    "description": "CodeSystem to specify reference to additional details of the input's use as part of the task execution or the output generated from task completion.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "Consent",
            "display": "Consent",
            "definition": "Consent for treatment record"
        },
        {
            "code": "ConsignmentNumber",
            "display": "Consignment Number",
            "definition": "The specimen consignment number"
        },
        {
            "code": "DiagnosticReport",
            "display": "DiagnosticReport",
            "definition": "The DiagnosticReport generated upon the task completion"
        },
        {
            "code": "RackId",
            "display": "Rack Number",
            "definition": "The specimen rack number"
        },
        {
            "code": "Specimen",
            "display": "Specimen",
            "definition": "The specimen provided for the task execution"
        },
        {
            "code": "WellId",
            "display": "Well Identification Number",
            "definition": "The specimen well identification number"
        }
    ]
}

Propose a change to CodeSystem Additional Information Type Genomics

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<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="business-status-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/business-status-genomics" />
    <version value="0.4.0" />
    <name value="BusinessStatusGenomics" />
    <title value="Business Status Genomics" />
    <status value="draft" />
    <date value="2024-07-23" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="Business status for test order Tasks in genomics" />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="determining-test-recoverability" />
        <display value="Determining Test Recoverability" />
    </concept>
    <concept>
        <code value="test-recoverable" />
        <display value="Test Recoverable" />
    </concept>
    <concept>
        <code value="notifying-requester-of-failure" />
        <display value="Notifying Requester Of Failure" />
    </concept>
    <concept>
        <code value="sample-requested" />
        <display value="Sample Requested (from external lab)" />
    </concept>
    <concept>
        <code value="sample-availability-confirmed" />
        <display value="Sample Availability Confirmed" />
    </concept>
    <concept>
        <code value="sample-booked-into-lab" />
        <display value="Sample Booked Into Lab" />
    </concept>
    <concept>
        <code value="variants-priorities-list-required" />
        <display value="Variants Priorities List Required" />
    </concept>
    <concept>
        <code value="variants-priorities-list-retrieved" />
        <display value="Variants Priorities List Retrieved" />
    </concept>
    <concept>
        <code value="previous-genomic-sequence-data-required" />
        <display value="Previous Genomic Sequence Data Required" />
    </concept>
    <concept>
        <code value="previous-genomic-sequence-data-retrieved" />
        <display value="Previous Genomic Sequence Data Retrieved" />
    </concept>
    <concept>
        <code value="remote-sample-prep-required" />
        <display value="Remote Sample Prep Required" />
    </concept>
    <concept>
        <code value="sample-sent" />
        <display value="Sample Sent" />
    </concept>
    <concept>
        <code value="sample-received" />
        <display value="Sample Received" />
    </concept>
    <concept>
        <code value="sample-stored" />
        <display value="Sample Stored" />
    </concept>
    <concept>
        <code value="further-sample-prep-required" />
        <display value="Further Sample Prep Required" />
    </concept>
    <concept>
        <code value="remote-processing-required" />
        <display value="Remote Processing Required" />
    </concept>
    <concept>
        <code value="remote-genomic-data-processing-required" />
        <display value="Remote Genomic Data Processing Required" />
    </concept>
    <concept>
        <code value="remote-interpretation-required" />
        <display value="Remote Interpretation Required" />
    </concept>
    <concept>
        <code value="further-clinical-details-required" />
        <display value="Further Clinical Details Required" />
    </concept>
    <concept>
        <code value="further-clinical-details-provided" />
        <display value="Further Clinical Details Provided" />
    </concept>
    <concept>
        <code value="reflex-confirmatory-test-required" />
        <display value="Reflex/Confirmatory Test Required" />
    </concept>
    <concept>
        <code value="reflex-confirmatory-test-complete" />
        <display value="Reflex/Confirmatory Test Complete" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "business-status-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/business-status-genomics",
    "version": "0.4.0",
    "name": "BusinessStatusGenomics",
    "title": "Business Status Genomics",
    "status": "draft",
    "date": "2024-07-23",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "Business status for test order Tasks in genomics",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "determining-test-recoverability",
            "display": "Determining Test Recoverability"
        },
        {
            "code": "test-recoverable",
            "display": "Test Recoverable"
        },
        {
            "code": "notifying-requester-of-failure",
            "display": "Notifying Requester Of Failure"
        },
        {
            "code": "sample-requested",
            "display": "Sample Requested (from external lab)"
        },
        {
            "code": "sample-availability-confirmed",
            "display": "Sample Availability Confirmed"
        },
        {
            "code": "sample-booked-into-lab",
            "display": "Sample Booked Into Lab"
        },
        {
            "code": "variants-priorities-list-required",
            "display": "Variants Priorities List Required"
        },
        {
            "code": "variants-priorities-list-retrieved",
            "display": "Variants Priorities List Retrieved"
        },
        {
            "code": "previous-genomic-sequence-data-required",
            "display": "Previous Genomic Sequence Data Required"
        },
        {
            "code": "previous-genomic-sequence-data-retrieved",
            "display": "Previous Genomic Sequence Data Retrieved"
        },
        {
            "code": "remote-sample-prep-required",
            "display": "Remote Sample Prep Required"
        },
        {
            "code": "sample-sent",
            "display": "Sample Sent"
        },
        {
            "code": "sample-received",
            "display": "Sample Received"
        },
        {
            "code": "sample-stored",
            "display": "Sample Stored"
        },
        {
            "code": "further-sample-prep-required",
            "display": "Further Sample Prep Required"
        },
        {
            "code": "remote-processing-required",
            "display": "Remote Processing Required"
        },
        {
            "code": "remote-genomic-data-processing-required",
            "display": "Remote Genomic Data Processing Required"
        },
        {
            "code": "remote-interpretation-required",
            "display": "Remote Interpretation Required"
        },
        {
            "code": "further-clinical-details-required",
            "display": "Further Clinical Details Required"
        },
        {
            "code": "further-clinical-details-provided",
            "display": "Further Clinical Details Provided"
        },
        {
            "code": "reflex-confirmatory-test-required",
            "display": "Reflex/Confirmatory Test Required"
        },
        {
            "code": "reflex-confirmatory-test-complete",
            "display": "Reflex/Confirmatory Test Complete"
        }
    ]
}

Propose a change to CodeSystem Business Status Genomics

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XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="message-events-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/message-events-genomics" />
    <version value="0.2.0" />
    <name value="MessageEventsGenomics" />
    <title value="Message Events Genomics" />
    <status value="draft" />
    <date value="2022-11-25" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="Common messaging events for Genomics Test Orders and Reports." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="genomictestrequest" />
        <display value="Genomic Test Request" />
        <definition value="A Service Request bundle for ordering genomic tests" />
    </concept>
    <concept>
        <code value="genomictestresponse" />
        <display value="Genomic Test Response" />
        <definition value="A Diagnostic Report bundle for test results" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "message-events-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/message-events-genomics",
    "version": "0.2.0",
    "name": "MessageEventsGenomics",
    "title": "Message Events Genomics",
    "status": "draft",
    "date": "2022-11-25",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "Common messaging events for Genomics Test Orders and Reports.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "genomictestrequest",
            "display": "Genomic Test Request",
            "definition": "A Service Request bundle for ordering genomic tests"
        },
        {
            "code": "genomictestresponse",
            "display": "Genomic Test Response",
            "definition": "A Diagnostic Report bundle for test results"
        }
    ]
}

Propose a change to CodeSystem Message Events Genomics

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XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="patient-choice-category-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics" />
    <version value="0.2.0" />
    <name value="PatientChoiceCategoryGenomics" />
    <title value="Patient Choice Category Genomics" />
    <status value="draft" />
    <date value="2022-12-21T11:27:52.3231281+00:00" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="adult-own-choice" />
        <display value="Adult (made their own choice)" />
    </concept>
    <concept>
        <code value="adult-lack-capacity" />
        <display value="Adult lacking capacity (choices advised by consultee)" />
    </concept>
    <concept>
        <code value="child" />
        <display value="Child (parent or guardian choices)" />
    </concept>
    <concept>
        <code value="clinician" />
        <display value="Clinician has agreed to the test (in the patient`s best interest)" />
    </concept>
    <concept>
        <code value="deceased" />
        <display value="Deceased (choices made on behalf of deceased individual)" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "patient-choice-category-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/patient-choice-category-genomics",
    "version": "0.2.0",
    "name": "PatientChoiceCategoryGenomics",
    "title": "Patient Choice Category Genomics",
    "status": "draft",
    "date": "2022-12-21T11:27:52.3231281+00:00",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "A set of codes use to identify the categories of sources of obtaining the patient consent before undergoing Genomic test.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "adult-own-choice",
            "display": "Adult (made their own choice)"
        },
        {
            "code": "adult-lack-capacity",
            "display": "Adult lacking capacity (choices advised by consultee)"
        },
        {
            "code": "child",
            "display": "Child (parent or guardian choices)"
        },
        {
            "code": "clinician",
            "display": "Clinician has agreed to the test (in the patient`s best interest)"
        },
        {
            "code": "deceased",
            "display": "Deceased (choices made on behalf of deceased individual)"
        }
    ]
}

Propose a change to CodeSystem Patient Choice Category Genomics

HTML View

Table View

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="patient-consultee-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics" />
    <version value="0.2.0" />
    <name value="PatientConsulteeGenomics" />
    <title value="Patient Consultee Genomics" />
    <status value="draft" />
    <date value="2022-12-28T16:41:15.0168724+00:00" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="A code to identify if patient guardian is a Consultee" />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="consultee" />
        <display value="Consultee" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "patient-consultee-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/patient-consultee-genomics",
    "version": "0.2.0",
    "name": "PatientConsulteeGenomics",
    "title": "Patient Consultee Genomics",
    "status": "draft",
    "date": "2022-12-28T16:41:15.0168724+00:00",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "A code to identify if patient guardian is a Consultee",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "consultee",
            "display": "Consultee"
        }
    ]
}

Propose a change to CodeSystem Patient Consultee Genomics

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Table View

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="patient-choice-researchparticipation" />
    <url value="https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation" />
    <version value="0.2.0" />
    <name value="PatientChoiceResearchParticipation" />
    <title value="Patient Choice Research Participation" />
    <status value="draft" />
    <date value="2022-12-21T11:27:52.3231281+00:00" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="like-to-discuss-later" />
        <display value="Patient would like to discuss at a later date" />
    </concept>
    <concept>
        <code value="patient-lack-capacity" />
        <display value="Patient lacks capacity and no consultee available" />
    </concept>
    <concept>
        <code value="inappropriate-to-discuss" />
        <display value="Inappropriate to have discussion" />
    </concept>
    <concept>
        <code value="other" />
        <display value="Other" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "patient-choice-researchparticipation",
    "url": "https://fhir.nhs.uk/CodeSystem/patient-choice-researchparticipation",
    "version": "0.2.0",
    "name": "PatientChoiceResearchParticipation",
    "title": "Patient Choice Research Participation",
    "status": "draft",
    "date": "2022-12-21T11:27:52.3231281+00:00",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "A set of codes use to identify the sources of obtaining the patient consent in participating in the National Genomic Research.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "like-to-discuss-later",
            "display": "Patient would like to discuss at a later date"
        },
        {
            "code": "patient-lack-capacity",
            "display": "Patient lacks capacity and no consultee available"
        },
        {
            "code": "inappropriate-to-discuss",
            "display": "Inappropriate to have discussion"
        },
        {
            "code": "other",
            "display": "Other"
        }
    ]
}

Propose a change to CodeSystem Patient Choice Research Participation

HTML View

Table View

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="reasonfortesting-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics" />
    <version value="0.1.0" />
    <name value="ReasonforTestingGenomics" />
    <title value="Reason for Testing Genomics" />
    <status value="draft" />
    <date value="2024-07-09T00:00:00.000Z" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
        </telecom>
    </contact>
    <description value="A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.reasonCode." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="primary-test-request" />
        <display value="Primary Test Request" />
        <concept>
            <code value="carrier" />
            <display value="Carrier" />
        </concept>
        <concept>
            <code value="diagnostic" />
            <display value="Diagnostic" />
        </concept>
        <concept>
            <code value="disease-monitoring-mrdmechanism" />
            <display value="Disease Monitoring MRD CHIMERISM" />
        </concept>
        <concept>
            <code value="dna-storage" />
            <display value="DNA Storage" />
        </concept>
        <concept>
            <code value="follow-up" />
            <display value="Follow Up" />
        </concept>
        <concept>
            <code value="predictive" />
            <display value="Predictive" />
        </concept>
        <concept>
            <code value="relapse" />
            <display value="Relapse" />
        </concept>
        <concept>
            <code value="staging-or-prognosis" />
            <display value="Staging or Prognosis" />
        </concept>
        <concept>
            <code value="unknown" />
            <display value="Unknown" />
        </concept>
    </concept>
    <concept>
        <code value="reanalysis-test-request" />
        <display value="Reanalysis Test Request" />
        <concept>
            <code value="change-in-presentation" />
            <display value="Change In Presentation" />
        </concept>
        <concept>
            <code value="newly-affected-family-member" />
            <display value="Newly Affected Family Member" />
        </concept>
        <concept>
            <code value="new-pregnancy" />
            <display value="New Pregnancy" />
        </concept>
        <concept>
            <code value="new-treatment-clinical-management" />
            <display value="New Treatment/Clinical Management" />
        </concept>
        <concept>
            <code value="recently-deceased-to-inform-family" />
            <display value="Recently Deceased To Inform Family" />
        </concept>
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "reasonfortesting-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics",
    "version": "0.1.0",
    "name": "ReasonforTestingGenomics",
    "title": "Reason for Testing Genomics",
    "status": "draft",
    "date": "2024-07-09T00:00:00.000Z",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net"
                }
            ]
        }
    ],
    "description": "A set of codes use to identify the reason for requesting a genomics test.This is intended to be used on ServiceRequest.reasonCode.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "primary-test-request",
            "display": "Primary Test Request",
            "concept":  [
                {
                    "code": "carrier",
                    "display": "Carrier"
                },
                {
                    "code": "diagnostic",
                    "display": "Diagnostic"
                },
                {
                    "code": "disease-monitoring-mrdmechanism",
                    "display": "Disease Monitoring MRD CHIMERISM"
                },
                {
                    "code": "dna-storage",
                    "display": "DNA Storage"
                },
                {
                    "code": "follow-up",
                    "display": "Follow Up"
                },
                {
                    "code": "predictive",
                    "display": "Predictive"
                },
                {
                    "code": "relapse",
                    "display": "Relapse"
                },
                {
                    "code": "staging-or-prognosis",
                    "display": "Staging or Prognosis"
                },
                {
                    "code": "unknown",
                    "display": "Unknown"
                }
            ]
        },
        {
            "code": "reanalysis-test-request",
            "display": "Reanalysis Test Request",
            "concept":  [
                {
                    "code": "change-in-presentation",
                    "display": "Change In Presentation"
                },
                {
                    "code": "newly-affected-family-member",
                    "display": "Newly Affected Family Member"
                },
                {
                    "code": "new-pregnancy",
                    "display": "New Pregnancy"
                },
                {
                    "code": "new-treatment-clinical-management",
                    "display": "New Treatment/Clinical Management"
                },
                {
                    "code": "recently-deceased-to-inform-family",
                    "display": "Recently Deceased To Inform Family"
                }
            ]
        }
    ]
}

Propose a change to CodeSystem Reason for Testing Genomics

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XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="UKCore-SampleCategory" />
    <url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
    <version value="2.0.0" />
    <name value="UKCoreSampleCategory" />
    <title value="UK Core Sample Category" />
    <status value="active" />
    <date value="2024-08-05" />
    <publisher value="HL7 UK" />
    <contact>
        <name value="HL7 UK" />
        <telecom>
            <system value="email" />
            <value value="ukcore@hl7.org.uk" />
            <use value="work" />
            <rank value="1" />
        </telecom>
    </contact>
    <description value="A CodeSystem to record the categorisation of a specimen." />
    <copyright value="Copyright &#169; 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <hierarchyMeaning value="is-a" />
    <content value="complete" />
    <concept>
        <code value="tumour" />
        <display value="Tumour" />
        <concept>
            <code value="solid-tumour" />
            <display value="Solid Tumour" />
        </concept>
        <concept>
            <code value="liquid-tumour" />
            <display value="Liquid Tumour" />
        </concept>
    </concept>
    <concept>
        <code value="germline" />
        <display value="Germline" />
    </concept>
    <concept>
        <code value="other" />
        <display value="Other" />
    </concept>
    <concept>
        <code value="not-known" />
        <display value="Not Known" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "UKCore-SampleCategory",
    "url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
    "version": "2.0.0",
    "name": "UKCoreSampleCategory",
    "title": "UK Core Sample Category",
    "status": "active",
    "date": "2024-08-05",
    "publisher": "HL7 UK",
    "contact":  [
        {
            "name": "HL7 UK",
            "telecom":  [
                {
                    "system": "email",
                    "value": "ukcore@hl7.org.uk",
                    "use": "work",
                    "rank": 1
                }
            ]
        }
    ],
    "description": "A CodeSystem to record the categorisation of a specimen.",
    "copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "hierarchyMeaning": "is-a",
    "content": "complete",
    "concept":  [
        {
            "code": "tumour",
            "display": "Tumour",
            "concept":  [
                {
                    "code": "solid-tumour",
                    "display": "Solid Tumour"
                },
                {
                    "code": "liquid-tumour",
                    "display": "Liquid Tumour"
                }
            ]
        },
        {
            "code": "germline",
            "display": "Germline"
        },
        {
            "code": "other",
            "display": "Other"
        },
        {
            "code": "not-known",
            "display": "Not Known"
        }
    ]
}

Propose a change to CodeSystem Genomic Sample Category

HTML View

Table View

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="specimen-collection-specialhandling-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics" />
    <version value="0.1.0" />
    <name value="SpecimenCollectionSpecialHandlingGenomics" />
    <title value="Specimen Collection Special Handling Genomics" />
    <status value="draft" />
    <date value="2024-08-05T00:00:00.000Z" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
        </telecom>
    </contact>
    <description value="A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element." />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="sensitive-incineration" />
        <display value="Sensitive Incineration" />
    </concept>
    <concept>
        <code value="cremation" />
        <display value="Cremation" />
    </concept>
    <concept>
        <code value="return-to-patient" />
        <display value="Return To Patient" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "specimen-collection-specialhandling-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/specimen-collection-specialhandling-genomics",
    "version": "0.1.0",
    "name": "SpecimenCollectionSpecialHandlingGenomics",
    "title": "Specimen Collection Special Handling Genomics",
    "status": "draft",
    "date": "2024-08-05T00:00:00.000Z",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net"
                }
            ]
        }
    ],
    "description": "A set of codes use to identify the type of special collection process require to handle some specimen in genomics.This is intended to be used on Specimen.collection.extension:specialHandling element.",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "sensitive-incineration",
            "display": "Sensitive Incineration"
        },
        {
            "code": "cremation",
            "display": "Cremation"
        },
        {
            "code": "return-to-patient",
            "display": "Return To Patient"
        }
    ]
}

Propose a change to CodeSystem Specimen Collection SpecialHandling Genomics

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Table View