Specimen

Specimen-BloodEDTA-Example

Example of a placeholder Specimen resource that is awaiting collection.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-BloodEDTA-Example",
"identifier": [
{
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RGT03135"
}
],
"status": "unavailable",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-MeirLieberman-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-BloodEDTA-Example" />
<identifier>
<system value="https://fhir.add.nhs.uk/Id/specimenId" />
<value value="RGT03135" />
</identifier>
<status value="unavailable" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-MeirLieberman-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307873" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example" />
</request>
</Specimen>

Specimen-BloodEDTA-WithCollectionDetails-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-BloodEDTA-WithCollectionDetails-Example",
"identifier": [
{
"system": "https://fhir.leedsth.nhs.uk/Id/specimenId",
"value": "RR8-696B0-17843"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-FayMutlow-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307806"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "Phletobomist-Lois Lane"
},
"collectedDateTime": "2023-10-05T15:30:00Z"
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-BloodEDTA-WithCollectionDetails-Example" />
<identifier>
<system value="https://fhir.leedsth.nhs.uk/Id/specimenId" />
<value value="RR8-696B0-17843" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-FayMutlow-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307806" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="Phletobomist-Lois Lane" />
</collector>
<collectedDateTime value="2023-10-05T15:30:00Z" />
</collection>
</Specimen>

Specimen-BoneMarrowAspiration-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-BoneMarrowAspiration-Example",
"identifier": [
{
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81234",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
}
}
],
"accessionIdentifier": {
"system": "https://www.leedsth.nhs.uk/path",
"value": "RR8123745",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "RR8"
}
}
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "396997002",
"display": "Specimen from bone marrow obtained by aspiration"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example"
},
"receivedTime": "2023-08-29T11:00:00Z",
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-BoneMarrowAspiration-Example" />
<identifier>
<system value="urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19" />
<value value="RR81234" />
<assigner>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="696B0" />
</identifier>
</assigner>
</identifier>
<accessionIdentifier>
<system value="https://www.leedsth.nhs.uk/path" />
<value value="RR8123745" />
<assigner>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="RR8" />
</identifier>
</assigner>
</accessionIdentifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="396997002" />
<display value="Specimen from bone marrow obtained by aspiration" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PatrickSammy-Example" />
</subject>
<receivedTime value="2023-08-29T11:00:00Z" />
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example" />
</request>
</Specimen>

Specimen-JamesMetcalfeBloodEDTA-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-JamesMetcalfeBloodEDTA-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "germline",
"display": "Germline"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.medway.nhs.uk/Id/specimenId",
"value": "RH-696B0-17843"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-JamesMetcalfe-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307806"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "Phletobomist-Lois Lane"
},
"collectedDateTime": "2023-10-02T10:00:00Z"
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-JamesMetcalfeBloodEDTA-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="germline" />
<display value="Germline" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.medway.nhs.uk/Id/specimenId" />
<value value="RH-696B0-17843" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-JamesMetcalfe-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307806" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="Phletobomist-Lois Lane" />
</collector>
<collectedDateTime value="2023-10-02T10:00:00Z" />
</collection>
</Specimen>

Specimen-PatrickSammyBoneMarrowAspiration-Example

Example of a specimen resource with additional collection information on specimen condition and category.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-PatrickSammyBoneMarrowAspiration-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "liquid-tumour",
"display": "Liquid Tumour"
}
]
}
}
],
"identifier": [
{
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19",
"value": "RR81235",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "696B0"
}
}
}
],
"accessionIdentifier": {
"system": "https://www.leedsth.nhs.uk/path",
"value": "RR8123745",
"assigner": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "RR8"
}
}
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "396997002",
"display": "Specimen from bone marrow obtained by aspiration"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"receivedTime": "2023-09-11T11:00:00Z",
"condition": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0493",
"code": "FROZ",
"display": "Frozen"
}
]
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-PatrickSammyBoneMarrowAspiration-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="liquid-tumour" />
<display value="Liquid Tumour" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19" />
<value value="RR81235" />
<assigner>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="696B0" />
</identifier>
</assigner>
</identifier>
<accessionIdentifier>
<system value="https://www.leedsth.nhs.uk/path" />
<value value="RR8123745" />
<assigner>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="RR8" />
</identifier>
</assigner>
</accessionIdentifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="396997002" />
<display value="Specimen from bone marrow obtained by aspiration" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PatrickSammy-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307873" />
</identifier>
</subject>
<receivedTime value="2023-09-11T11:00:00Z" />
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example" />
</request>
<condition>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0493" />
<code value="FROZ" />
<display value="Frozen" />
</coding>
</condition>
</Specimen>

Specimen-PatrickSammyBloodEDTA-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-PatrickSammyBloodEDTA-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "germline",
"display": "Germline"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RGT03135A"
}
],
"status": "unavailable",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307873"
}
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example"
}
],
"collection": {
"collectedDateTime": "2023-09-11T09:00:00Z",
"quantity": {
"system": "http://unitsofmeasure.org",
"code": "mL",
"value": 2.5
}
}
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-PatrickSammyBloodEDTA-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="germline" />
<display value="Germline" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.add.nhs.uk/Id/specimenId" />
<value value="RGT03135A" />
</identifier>
<status value="unavailable" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PatrickSammy-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307873" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example" />
</request>
<collection>
<collectedDateTime value="2023-09-11T09:00:00Z" />
<quantity>
<value value="2.5" />
<system value="http://unitsofmeasure.org" />
<code value="mL" />
</quantity>
</collection>
</Specimen>

Specimen-PheobeSmitham-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-PheobeSmitham-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "germline",
"display": "Germline"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.leedssth.nhs.uk//Id/specimenId",
"value": "RGD-69050-P-RR12764"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-PheobeSmitham-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307539"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "Phletobomist-Lois Lane"
},
"collectedDateTime": "2023-09-17"
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-PheobeSmitham-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="germline" />
<display value="Germline" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.leedssth.nhs.uk//Id/specimenId" />
<value value="RGD-69050-P-RR12764" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PheobeSmitham-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307539" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="Phletobomist-Lois Lane" />
</collector>
<collectedDateTime value="2023-09-17" />
</collection>
</Specimen>

Specimen-PheobeSmithamFather-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-PheobeSmithamFather-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "germline",
"display": "Germline"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.leedssth.nhs.uk//Id/specimenId",
"value": "RGD-69050-FTH-RR12764"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-PheobeSmithamFather-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307636"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "Phletobomist-Lois Lane"
},
"collectedDateTime": "2023-09-17"
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-PheobeSmithamFather-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="germline" />
<display value="Germline" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.leedssth.nhs.uk//Id/specimenId" />
<value value="RGD-69050-FTH-RR12764" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PheobeSmithamFather-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307636" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="Phletobomist-Lois Lane" />
</collector>
<collectedDateTime value="2023-09-17" />
</collection>
</Specimen>

Specimen-PheobeSmithamMother-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-PheobeSmithamMother-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "germline",
"display": "Germline"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.leedssth.nhs.uk//Id/specimenId",
"value": "ROA-69050-MTH-RR12764"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "445295009",
"display": "Blood specimen with EDTA"
}
]
},
"subject": {
"reference": "Patient/Patient-PheobeSmithamMother-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307246"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "Phletobomist-Lois Lane"
},
"collectedDateTime": "2023-09-17"
},
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-PheobeSmithamMother-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="germline" />
<display value="Germline" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.leedssth.nhs.uk//Id/specimenId" />
<value value="ROA-69050-MTH-RR12764" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="445295009" />
<display value="Blood specimen with EDTA" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-PheobeSmithamMother-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307246" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="Phletobomist-Lois Lane" />
</collector>
<collectedDateTime value="2023-09-17" />
</collection>
</Specimen>

Specimen-RyanneBoulderPartnerSaliva-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-RyanneBoulderPartnerSaliva-Example",
"identifier": [
{
"system": "https://fhir.kingstonhospital.nhs.uk//Id/specimenId",
"value": "ROA-69050-FTH-RWT13521"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "119342007",
"display": "Saliva specimen"
}
]
},
"subject": {
"reference": "Patient/Patient-RyanneBoulderPartner-Example"
},
"container": [
{
"description": "Container:ROA-69050-FTH-RWT13521 contains Saliva for Father"
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-RyanneBoulderPartnerSaliva-Example" />
<identifier>
<system value="https://fhir.kingstonhospital.nhs.uk//Id/specimenId" />
<value value="ROA-69050-FTH-RWT13521" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="119342007" />
<display value="Saliva specimen" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-RyanneBoulderPartner-Example" />
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" />
</request>
<container>
<description value="Container:ROA-69050-FTH-RWT13521 contains Saliva for Father" />
</container>
</Specimen>

Specimen-RyanneBoulderSaliva-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-RyanneBoulderSaliva-Example",
"identifier": [
{
"system": "https://fhir.kingstonhospital.nhs.uk//Id/specimenId",
"value": "ROA-69050-MTH-RWT13521"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "119342007",
"display": "Saliva specimen"
}
]
},
"subject": {
"reference": "Patient/Patient-RyanneBoulder-Example"
},
"container": [
{
"description": "Container:ROA-69050-MTH-RWT13521 contains Saliva for Mother"
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-RyanneBoulderSaliva-Example" />
<identifier>
<system value="https://fhir.kingstonhospital.nhs.uk//Id/specimenId" />
<value value="ROA-69050-MTH-RWT13521" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="119342007" />
<display value="Saliva specimen" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-RyanneBoulder-Example" />
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" />
</request>
<container>
<description value="Container:ROA-69050-MTH-RWT13521 contains Saliva for Mother" />
</container>
</Specimen>

Specimen-SolidTumor-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-SolidTumor-Example",
"identifier": [
{
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RA257630"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "364611000000101",
"display": "Tissue resection sample"
}
]
},
"subject": {
"reference": "Patient/Patient-ZelmaHadjkiss-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449307555"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "ClinicalScientist-John Taylor"
},
"collectedDateTime": "2023-09-09T11:00:00Z",
"bodySite": {
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference",
"valueReference": {
"reference": "BodyStructure/BodyStructure-BodySiteLocationLungs-Example"
}
}
]
}
},
"condition": [
{
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
"code": "fresh",
"display": "Fresh"
}
]
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-SolidTumor-Example" />
<identifier>
<system value="https://fhir.add.nhs.uk/Id/specimenId" />
<value value="RA257630" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="364611000000101" />
<display value="Tissue resection sample" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-ZelmaHadjkiss-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449307555" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="ClinicalScientist-John Taylor" />
</collector>
<collectedDateTime value="2023-09-09T11:00:00Z" />
<bodySite>
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference">
<valueReference>
<reference value="BodyStructure/BodyStructure-BodySiteLocationLungs-Example" />
</valueReference>
</extension>
</bodySite>
</collection>
<condition>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
<code value="fresh" />
<display value="Fresh" />
</coding>
</condition>
</Specimen>

Specimen-SolidTumorDemeizaSeo-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-SolidTumorDemeizaSeo-Example",
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
"code": "solid-tumour",
"display": "Solid Tumour"
}
]
}
}
],
"identifier": [
{
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "RA257631"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "364611000000101",
"display": "Tissue resection sample"
}
]
},
"subject": {
"reference": "Patient/Patient-DemeizaSeo-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9449306559"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "ClinicalScientist-John Taylor"
},
"collectedDateTime": "2023-09-09T11:00:00Z",
"bodySite": {
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference",
"valueReference": {
"reference": "BodyStructure/BodyStructure-BodySiteLocationAbdomen-Example"
}
}
]
}
},
"condition": [
{
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
"code": "fresh",
"display": "Fresh"
}
]
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerSolidTumor-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-SolidTumorDemeizaSeo-Example" />
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-SampleCategory">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
<code value="solid-tumour" />
<display value="Solid Tumour" />
</coding>
</valueCodeableConcept>
</extension>
<identifier>
<system value="https://fhir.add.nhs.uk/Id/specimenId" />
<value value="RA257631" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="364611000000101" />
<display value="Tissue resection sample" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-DemeizaSeo-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9449306559" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerSolidTumor-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="ClinicalScientist-John Taylor" />
</collector>
<collectedDateTime value="2023-09-09T11:00:00Z" />
<bodySite>
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference">
<valueReference>
<reference value="BodyStructure/BodyStructure-BodySiteLocationAbdomen-Example" />
</valueReference>
</extension>
</bodySite>
</collection>
<condition>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
<code value="fresh" />
<display value="Fresh" />
</coding>
</condition>
</Specimen>

Specimen-TissueResection-Example

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-TissueResection-Example",
"identifier": [
{
"system": "https://fhir.add.nhs.uk/Id/specimenId",
"value": "699F01231423"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "364611000000101",
"display": "Tissue resection sample"
}
]
},
"subject": {
"reference": "Patient/Patient-KayBurbridge-Example",
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "8449303541"
}
},
"collection": {
"collector": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "9999999998"
},
"display": "ClinicalScientist-Anna Lane"
},
"collectedDateTime": "2023-11-04T15:00:00Z",
"bodySite": {
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference",
"valueReference": {
"reference": "BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example"
}
}
]
}
},
"condition": [
{
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
"code": "fresh",
"display": "Fresh"
}
]
}
],
"request": [
{
"reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example"
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-TissueResection-Example" />
<identifier>
<system value="https://fhir.add.nhs.uk/Id/specimenId" />
<value value="699F01231423" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="364611000000101" />
<display value="Tissue resection sample" />
</coding>
</type>
<subject>
<reference value="Patient/Patient-KayBurbridge-Example" />
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="8449303541" />
</identifier>
</subject>
<request>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example" />
</request>
<collection>
<collector>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="9999999998" />
</identifier>
<display value="ClinicalScientist-Anna Lane" />
</collector>
<collectedDateTime value="2023-11-04T15:00:00Z" />
<bodySite>
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference">
<valueReference>
<reference value="BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example" />
</valueReference>
</extension>
</bodySite>
</collection>
<condition>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
<code value="fresh" />
<display value="Fresh" />
</coding>
</condition>
</Specimen>

Specimen-MichealJonesBlood-Minimal

Example of a Specimen resource with the minimal information populated.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-MichaelJonesBlood-Example",
"accessionIdentifier": {
"system": "https://www.christie.nhs.uk/path",
"value": "Spec123456"
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "87612001",
"display": "Blood (substance)"
}
]
},
"subject": {
"identifier": {
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9999999999"
}
},
"request": [
{
"identifier": {
"system": "https://www.christie.nhs.uk/ehr",
"value": "LabOrder123456"
}
}
],
"collection": {
"collectedDateTime": "2022-07-11T09:00:00Z",
"quantity": {
"system": "http://unitsofmeasure.org",
"code": "mL",
"value": 2.5
}
}
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-MichaelJonesBlood-Example" />
<accessionIdentifier>
<system value="https://www.christie.nhs.uk/path" />
<value value="Spec123456" />
</accessionIdentifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="87612001" />
<display value="Blood (substance)" />
</coding>
</type>
<subject>
<identifier>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9999999999" />
</identifier>
</subject>
<request>
<identifier>
<system value="https://www.christie.nhs.uk/ehr" />
<value value="LabOrder123456" />
</identifier>
</request>
<collection>
<collectedDateTime value="2022-07-11T09:00:00Z" />
<quantity>
<value value="2.5" />
<system value="http://unitsofmeasure.org" />
<code value="mL" />
</quantity>
</collection>
</Specimen>

Specimen-MichaelJonesBloodWithCollectionDetails-Example

Example of a specimen resource with additional collection information.

Specimen
{
"resourceType": "Specimen",
"id": "Specimen-MichaelJonesBloodWithCollectionDetails-Example",
"identifier": [
{
"system": "https://www.christie.nhs.uk/path",
"value": "Spec123456"
}
],
"accessionIdentifier": {
"system": "https://www.christie.nhs.uk/path",
"value": "Spec123456"
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "87612001",
"display": "Blood (substance)"
}
]
},
"subject": {
"reference": "Patient?identifier=https://fhir.nhs.uk/Id/nhs-number|9999999999"
},
"receivedTime": "2022-07-13T09:00:00Z",
"request": [
{
"reference": "ServiceRequest?identifier=https://www.christie.nhs.uk/ehr|LabOrder123456"
}
],
"collection": {
"collector": {
"reference": "Practitioner?identifier=https://fhir.nhs.uk/Id/sds-user-id|999999"
},
"collectedDateTime": "2022-07-11T09:00:00Z",
"quantity": {
"system": "http://unitsofmeasure.org",
"code": "mL",
"value": 2.5
},
"method": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "129300006",
"display": "Puncture - action"
}
]
},
"bodySite": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "14975008",
"display": "Forearm structure (body structure)"
}
]
}
},
"container": [
{
"identifier": [
{
"use": "official",
"type": {
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0203",
"code": "ACSN",
"display": "Accession ID"
}
]
},
"system": "https://www.christie.nhs.uk/path",
"value": "ASCN123456",
"assigner": {
"reference": "Organization?identifier=https://fhir.nhs.uk/Id/ods-organization-code|RBV"
}
}
],
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "706067003",
"display": "Blood collection/transfer device (physical object)"
}
]
},
"specimenQuantity": {
"system": "http://unitsofmeasure.org",
"code": "mL",
"value": 2.5
}
}
],
"condition": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0493",
"code": "SNR",
"display": "Sample not received"
}
]
}
]
}
<Specimen xmlns="http://hl7.org/fhir">
<id value="Specimen-MichaelJonesBloodWithCollectionDetails-Example" />
<identifier>
<system value="https://www.christie.nhs.uk/path" />
<value value="Spec123456" />
</identifier>
<accessionIdentifier>
<system value="https://www.christie.nhs.uk/path" />
<value value="Spec123456" />
</accessionIdentifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="87612001" />
<display value="Blood (substance)" />
</coding>
</type>
<subject>
<reference value="Patient?identifier=https://fhir.nhs.uk/Id/nhs-number|9999999999" />
</subject>
<receivedTime value="2022-07-13T09:00:00Z" />
<request>
<reference value="ServiceRequest?identifier=https://www.christie.nhs.uk/ehr|LabOrder123456" />
</request>
<collection>
<collector>
<reference value="Practitioner?identifier=https://fhir.nhs.uk/Id/sds-user-id|999999" />
</collector>
<collectedDateTime value="2022-07-11T09:00:00Z" />
<quantity>
<value value="2.5" />
<system value="http://unitsofmeasure.org" />
<code value="mL" />
</quantity>
<method>
<coding>
<system value="http://snomed.info/sct" />
<code value="129300006" />
<display value="Puncture - action" />
</coding>
</method>
<bodySite>
<coding>
<system value="http://snomed.info/sct" />
<code value="14975008" />
<display value="Forearm structure (body structure)" />
</coding>
</bodySite>
</collection>
<container>
<identifier>
<use value="official" />
<type>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0203" />
<code value="ACSN" />
<display value="Accession ID" />
</coding>
</type>
<system value="https://www.christie.nhs.uk/path" />
<value value="ASCN123456" />
<assigner>
<reference value="Organization?identifier=https://fhir.nhs.uk/Id/ods-organization-code|RBV" />
</assigner>
</identifier>
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="706067003" />
<display value="Blood collection/transfer device (physical object)" />
</coding>
</type>
<specimenQuantity>
<value value="2.5" />
<system value="http://unitsofmeasure.org" />
<code value="mL" />
</specimenQuantity>
</container>
<condition>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0493" />
<code value="SNR" />
<display value="Sample not received" />
</coding>
</condition>
</Specimen>