FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

ConceptMaps

ConceptMaps created for use within the NHS England FHIR Genomics Implementation Guide.

These are used for the translation of concepts between the NHS Master Data Set (MDS) to equivalent SNOMED CT concepts, and FHIR CodeSystems.

ConceptMap Genomic Disease Status

Usage
ConceptMap used for the translation and recording of concepts for the disease status. This is intended for the element Condition.clinicalStatus

HTML View

to ConditionClinicalStatusCodes

Source	Equivalence	Target	Comment
affected (Affected)	inexact	active (Active)	Although, the relationship is inexact, Active is the recommended concept to indicate/record that disease status is affected.
unaffected (Unaffected)	inexact	inactive (Inactive)	Although, the relationship is inexact, Inactive is the recommended concept to indicate/record that disease status is unaffected.
unknown (Unknown)	unmatched		When disease status is unknown, clinical status should be omitted from the Condition resource.

Table View

ConceptMap.id[0]	genomics-disease-status
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-disease-status
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsDiseaseStatus
ConceptMap.title[0]	Genomics Disease Status
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-08T14:15:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for the disease status. This is intended for the element Condition.clinicalStatus
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://terminology.hl7.org/ValueSet/condition-clinical
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://terminology.hl7.org/CodeSystem/condition-clinical
ConceptMap.group[0].element[0].code[0]	affected
ConceptMap.group[0].element[0].display[0]	Affected
ConceptMap.group[0].element[0].target[0].code[0]	active
ConceptMap.group[0].element[0].target[0].display[0]	Active
ConceptMap.group[0].element[0].target[0].equivalence[0]	inexact
ConceptMap.group[0].element[0].target[0].comment[0]	Although, the relationship is inexact, Active is the recommended concept to indicate/record that disease status is affected.
ConceptMap.group[0].element[1].code[0]	unaffected
ConceptMap.group[0].element[1].display[0]	Unaffected
ConceptMap.group[0].element[1].target[0].code[0]	inactive
ConceptMap.group[0].element[1].target[0].display[0]	Inactive
ConceptMap.group[0].element[1].target[0].equivalence[0]	inexact
ConceptMap.group[0].element[1].target[0].comment[0]	Although, the relationship is inexact, Inactive is the recommended concept to indicate/record that disease status is unaffected.
ConceptMap.group[0].element[2].code[0]	unknown
ConceptMap.group[0].element[2].display[0]	Unknown
ConceptMap.group[0].element[2].target[0].equivalence[0]	unmatched
ConceptMap.group[0].element[2].target[0].comment[0]	When disease status is unknown, clinical status should be omitted from the Condition resource.

XML View

<id value="genomics-disease-status" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-disease-status" />
<version value="0.1.0" />
<name value="GenomicsDiseaseStatus" />
<title value="Genomics Disease Status" />
<status value="draft" />
<date value="2024-08-08T14:15:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the disease status. This is intended for the element Condition.clinicalStatus" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://terminology.hl7.org/ValueSet/condition-clinical" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://terminology.hl7.org/CodeSystem/condition-clinical" />
<element>
<code value="affected" />
<display value="Affected" />
<target>
<code value="active" />
<display value="Active" />
<equivalence value="inexact" />
<comment value="Although, the relationship is inexact, Active is the recommended concept to indicate/record that disease status is affected." />
</target>
</element>
<element>
<code value="unaffected" />
<display value="Unaffected" />
<target>
<code value="inactive" />
<display value="Inactive" />
<equivalence value="inexact" />
<comment value="Although, the relationship is inexact, Inactive is the recommended concept to indicate/record that disease status is unaffected." />
</target>
</element>
<element>
<code value="unknown" />
<display value="Unknown" />
<target>
<equivalence value="unmatched" />
<comment value="When disease status is unknown, clinical status should be omitted from the Condition resource." />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-disease-status",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-disease-status",
"version": "0.1.0",
"name": "GenomicsDiseaseStatus",
"title": "Genomics Disease Status",
"status": "draft",
"date": "2024-08-08T14:15:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the disease status. This is intended for the element Condition.clinicalStatus",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://terminology.hl7.org/ValueSet/condition-clinical",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://terminology.hl7.org/CodeSystem/condition-clinical",
"element": [
{
"code": "affected",
"display": "Affected",
"target": [
{
"code": "active",
"display": "Active",
"equivalence": "inexact",
"comment": "Although, the relationship is inexact, Active is the recommended concept to indicate/record that disease status is affected."
}
]
},
{
"code": "unaffected",
"display": "Unaffected",
"target": [
{
"code": "inactive",
"display": "Inactive",
"equivalence": "inexact",
"comment": "Although, the relationship is inexact, Inactive is the recommended concept to indicate/record that disease status is unaffected."
}
]
},
{
"code": "unknown",
"display": "Unknown",
"target": [
{
"equivalence": "unmatched",
"comment": "When disease status is unknown, clinical status should be omitted from the Condition resource."
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Disease Status

ConceptMap Genomic Fetal Maternal Screening Genotype

Usage
ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.

Note:

An appropriate SNOMED CT code or free text should be used to record the Genotype

HTML View

to SNOMED_CT

Source	Equivalence	Target
alpha-beta-thalassaemia (Alpha Beta Thalassaemia)	equivalent	234389001 (Alpha-beta thalassemia (disorder))
HbAC (HbAC)	equivalent	76050008 (Hemoglobin C trait (disorder))
HbAS (HbAS)	equivalent	417357006 (Sickling disorder due to haemoglobin S)
HbSC (HbSC)	equivalent	35434009 (Sickle cell-hemoglobin C disease (disorder))
HbSS (HbSS)	equivalent	127040003 (Sickle cell-hemoglobin SS disease (disorder))
other (OTHER)	equivalent	other (Other)

Table View

ConceptMap.id[0]	genomics-fetal-maternal-screening-genotype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsFetalMaternalScreeningGenotype
ConceptMap.title[0]	Genomics Fetal Maternal Screening Genotype
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-08T18:15:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	alpha-beta-thalassaemia
ConceptMap.group[0].element[0].display[0]	Alpha Beta Thalassaemia
ConceptMap.group[0].element[0].target[0].code[0]	234389001
ConceptMap.group[0].element[0].target[0].display[0]	Alpha-beta thalassemia (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	HbAC
ConceptMap.group[0].element[1].display[0]	HbAC
ConceptMap.group[0].element[1].target[0].code[0]	76050008
ConceptMap.group[0].element[1].target[0].display[0]	Hemoglobin C trait (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	HbAS
ConceptMap.group[0].element[2].display[0]	HbAS
ConceptMap.group[0].element[2].target[0].code[0]	417357006
ConceptMap.group[0].element[2].target[0].display[0]	Sickling disorder due to haemoglobin S
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	HbSC
ConceptMap.group[0].element[3].display[0]	HbSC
ConceptMap.group[0].element[3].target[0].code[0]	35434009
ConceptMap.group[0].element[3].target[0].display[0]	Sickle cell-hemoglobin C disease (disorder)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	HbSS
ConceptMap.group[0].element[4].display[0]	HbSS
ConceptMap.group[0].element[4].target[0].code[0]	127040003
ConceptMap.group[0].element[4].target[0].display[0]	Sickle cell-hemoglobin SS disease (disorder)
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	other
ConceptMap.group[0].element[5].display[0]	OTHER
ConceptMap.group[0].element[5].target[0].code[0]	other
ConceptMap.group[0].element[5].target[0].display[0]	Other
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-fetal-maternal-screening-genotype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype" />
<version value="0.1.0" />
<name value="GenomicsFetalMaternalScreeningGenotype" />
<title value="Genomics Fetal Maternal Screening Genotype" />
<status value="draft" />
<date value="2024-08-08T18:15:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="alpha-beta-thalassaemia" />
<display value="Alpha Beta Thalassaemia" />
<target>
<code value="234389001" />
<display value="Alpha-beta thalassemia (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="HbAC" />
<display value="HbAC" />
<target>
<code value="76050008" />
<display value="Hemoglobin C trait (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="HbAS" />
<display value="HbAS" />
<target>
<code value="417357006" />
<display value="Sickling disorder due to haemoglobin S" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="HbSC" />
<display value="HbSC" />
<target>
<code value="35434009" />
<display value="Sickle cell-hemoglobin C disease (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="HbSS" />
<display value="HbSS" />
<target>
<code value="127040003" />
<display value="Sickle cell-hemoglobin SS disease (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="OTHER" />
<target>
<code value="other" />
<display value="Other" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-fetal-maternal-screening-genotype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-fetal-maternal-screening-genotype",
"version": "0.1.0",
"name": "GenomicsFetalMaternalScreeningGenotype",
"title": "Genomics Fetal Maternal Screening Genotype",
"status": "draft",
"date": "2024-08-08T18:15:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for fetal maternal screening genotype. This is intended for the element Condition.code. An appropriate SNOMED CT code or free text should be used to record the Genotype.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "alpha-beta-thalassaemia",
"display": "Alpha Beta Thalassaemia",
"target": [
{
"code": "234389001",
"display": "Alpha-beta thalassemia (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "HbAC",
"display": "HbAC",
"target": [
{
"code": "76050008",
"display": "Hemoglobin C trait (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "HbAS",
"display": "HbAS",
"target": [
{
"code": "417357006",
"display": "Sickling disorder due to haemoglobin S",
"equivalence": "equivalent"
}
]
},
{
"code": "HbSC",
"display": "HbSC",
"target": [
{
"code": "35434009",
"display": "Sickle cell-hemoglobin C disease (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "HbSS",
"display": "HbSS",
"target": [
{
"code": "127040003",
"display": "Sickle cell-hemoglobin SS disease (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "OTHER",
"target": [
{
"code": "other",
"display": "Other",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Fetal Maternal Screening Genotype

ConceptMap Genomic Condition Laterality of Hearing Loss

Usage
ConceptMap used for the translation and recording of concepts for laterality of hearing loss condition. This is intended for the element Condition.code

HTML View

to http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20

Source	Equivalence	Target
bilateral (Bilateral)	equivalent	95820000 (Bilateral hearing loss (disorder))
left (Left)	equivalent	473424007 (Hearing loss of left ear (disorder))
right (Right)	equivalent	473423001 (Hearing loss of right ear (disorder))

Table View

ConceptMap.id[0]	genomics-laterality-of-hearingloss
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-laterality-of-hearingloss
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsLateralityofHearingLoss
ConceptMap.title[0]	Genomics Laterality of Hearing Loss
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-22T16:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for laterality of hearing loss condition. This is intended for the element Condition.code
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	bilateral
ConceptMap.group[0].element[0].display[0]	Bilateral
ConceptMap.group[0].element[0].target[0].code[0]	95820000
ConceptMap.group[0].element[0].target[0].display[0]	Bilateral hearing loss (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	left
ConceptMap.group[0].element[1].display[0]	Left
ConceptMap.group[0].element[1].target[0].code[0]	473424007
ConceptMap.group[0].element[1].target[0].display[0]	Hearing loss of left ear (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	right
ConceptMap.group[0].element[2].display[0]	Right
ConceptMap.group[0].element[2].target[0].code[0]	473423001
ConceptMap.group[0].element[2].target[0].display[0]	Hearing loss of right ear (disorder)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-laterality-of-hearingloss" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-laterality-of-hearingloss" />
<version value="0.1.0" />
<name value="GenomicsLateralityofHearingLoss" />
<title value="Genomics Laterality of Hearing Loss" />
<status value="draft" />
<date value="2024-08-22T16:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for laterality of hearing loss condition. This is intended for the element Condition.code" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="bilateral" />
<display value="Bilateral" />
<target>
<code value="95820000" />
<display value="Bilateral hearing loss (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="left" />
<display value="Left" />
<target>
<code value="473424007" />
<display value="Hearing loss of left ear (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="right" />
<display value="Right" />
<target>
<code value="473423001" />
<display value="Hearing loss of right ear (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-laterality-of-hearingloss",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-laterality-of-hearingloss",
"version": "0.1.0",
"name": "GenomicsLateralityofHearingLoss",
"title": "Genomics Laterality of Hearing Loss",
"status": "draft",
"date": "2024-08-22T16:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for laterality of hearing loss condition. This is intended for the element Condition.code",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2015188001%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "bilateral",
"display": "Bilateral",
"target": [
{
"code": "95820000",
"display": "Bilateral hearing loss (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "left",
"display": "Left",
"target": [
{
"code": "473424007",
"display": "Hearing loss of left ear (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "right",
"display": "Right",
"target": [
{
"code": "473423001",
"display": "Hearing loss of right ear (disorder)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to Genomic Condition Laterality of Hearing Loss

ConceptMap Genomic Condition Liquid Tumour Type

Usage
ConceptMap used for the translation and recording of concepts when Condition.code field = liquid tumour types

HTML View

Source	Equivalence	Target
acute-myeloid-leukemia (Acute myeloid leukemia)	equivalent	91861009 (Acute myeloid leukemia (disorder))
acute-lymphoid-leukemia (Acute lymphoid leukemia)	equivalent	91857003 (Acute lymphoid leukemia, disease (disorder))

Table View

ConceptMap.id[0]	genomics-condition-liquidtumourtype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-condition-liquidtumourtype
ConceptMap.version[0]	0.2.0
ConceptMap.name[0]	GenomicsConditionLiquidTumourType
ConceptMap.title[0]	Genomics Condition Liquid Tumour Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-11T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts when Condition.code field = liquid tumour types
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	acute-myeloid-leukemia
ConceptMap.group[0].element[0].display[0]	Acute myeloid leukemia
ConceptMap.group[0].element[0].target[0].code[0]	91861009
ConceptMap.group[0].element[0].target[0].display[0]	Acute myeloid leukemia (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	acute-lymphoid-leukemia
ConceptMap.group[0].element[1].display[0]	Acute lymphoid leukemia
ConceptMap.group[0].element[1].target[0].code[0]	91857003
ConceptMap.group[0].element[1].target[0].display[0]	Acute lymphoid leukemia, disease (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-condition-liquidtumourtype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-condition-liquidtumourtype" />
<version value="0.2.0" />
<name value="GenomicsConditionLiquidTumourType" />
<title value="Genomics Condition Liquid Tumour Type" />
<status value="draft" />
<date value="2024-06-11T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts when Condition.code field = liquid tumour types" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="acute-myeloid-leukemia" />
<display value="Acute myeloid leukemia" />
<target>
<code value="91861009" />
<display value="Acute myeloid leukemia (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="acute-lymphoid-leukemia" />
<display value="Acute lymphoid leukemia" />
<target>
<code value="91857003" />
<display value="Acute lymphoid leukemia, disease (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-condition-liquidtumourtype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-condition-liquidtumourtype",
"version": "0.2.0",
"name": "GenomicsConditionLiquidTumourType",
"title": "Genomics Condition Liquid Tumour Type",
"status": "draft",
"date": "2024-06-11T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts when Condition.code field = liquid tumour types",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "acute-myeloid-leukemia",
"display": "Acute myeloid leukemia",
"target": [
{
"code": "91861009",
"display": "Acute myeloid leukemia (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "acute-lymphoid-leukemia",
"display": "Acute lymphoid leukemia",
"target": [
{
"code": "91857003",
"display": "Acute lymphoid leukemia, disease (disorder)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to Genomics Condition Liquid Tumour Type

ConceptMap Genomic Condition Pancreatic Tumour Type

Usage
ConceptMap used for the translation and recording of concepts when Condition.code field = pancreatic tumour type

HTML View

Source	Equivalence	Target
insulinoma (INSULINOMA)	equivalent	20955008 (Insulinoma, malignant (morphologic abnormality))
gastrinoma (GASTRINOMA)	equivalent	19756007 (Gastrinoma, malignant (morphologic abnormality))
glucagonoma (GLUCAGONOMA)	equivalent	66515009 (Glucagonoma, malignant (morphologic abnormality))
vipoma (VIPOMA)	equivalent	31131002 (Vipoma, malignant (morphologic abnormality))

Table View

ConceptMap.id[0]	genomics-condition-pancreatictumourtype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-condition-pancreatictumourtype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsConditionPancreaticTumourType
ConceptMap.title[0]	Genomics Condition Pancreatic Tumour Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-11T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts when Condition.code field = pancreatic tumour type
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	insulinoma
ConceptMap.group[0].element[0].display[0]	INSULINOMA
ConceptMap.group[0].element[0].target[0].code[0]	20955008
ConceptMap.group[0].element[0].target[0].display[0]	Insulinoma, malignant (morphologic abnormality)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	gastrinoma
ConceptMap.group[0].element[1].display[0]	GASTRINOMA
ConceptMap.group[0].element[1].target[0].code[0]	19756007
ConceptMap.group[0].element[1].target[0].display[0]	Gastrinoma, malignant (morphologic abnormality)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	glucagonoma
ConceptMap.group[0].element[2].display[0]	GLUCAGONOMA
ConceptMap.group[0].element[2].target[0].code[0]	66515009
ConceptMap.group[0].element[2].target[0].display[0]	Glucagonoma, malignant (morphologic abnormality)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	vipoma
ConceptMap.group[0].element[3].display[0]	VIPOMA
ConceptMap.group[0].element[3].target[0].code[0]	31131002
ConceptMap.group[0].element[3].target[0].display[0]	Vipoma, malignant (morphologic abnormality)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-condition-pancreatictumourtype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-condition-pancreatictumourtype" />
<version value="0.1.0" />
<name value="GenomicsConditionPancreaticTumourType" />
<title value="Genomics Condition Pancreatic Tumour Type" />
<status value="draft" />
<date value="2024-06-11T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts when Condition.code field = pancreatic tumour type" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="insulinoma" />
<display value="INSULINOMA" />
<target>
<code value="20955008" />
<display value="Insulinoma, malignant (morphologic abnormality)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="gastrinoma" />
<display value="GASTRINOMA" />
<target>
<code value="19756007" />
<display value="Gastrinoma, malignant (morphologic abnormality)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="glucagonoma" />
<display value="GLUCAGONOMA" />
<target>
<code value="66515009" />
<display value="Glucagonoma, malignant (morphologic abnormality)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="vipoma" />
<display value="VIPOMA" />
<target>
<code value="31131002" />
<display value="Vipoma, malignant (morphologic abnormality)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-condition-pancreatictumourtype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-condition-pancreatictumourtype",
"version": "0.1.0",
"name": "GenomicsConditionPancreaticTumourType",
"title": "Genomics Condition Pancreatic Tumour Type",
"status": "draft",
"date": "2024-06-11T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts when Condition.code field = pancreatic tumour type",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "insulinoma",
"display": "INSULINOMA",
"target": [
{
"code": "20955008",
"display": "Insulinoma, malignant (morphologic abnormality)",
"equivalence": "equivalent"
}
]
},
{
"code": "gastrinoma",
"display": "GASTRINOMA",
"target": [
{
"code": "19756007",
"display": "Gastrinoma, malignant (morphologic abnormality)",
"equivalence": "equivalent"
}
]
},
{
"code": "glucagonoma",
"display": "GLUCAGONOMA",
"target": [
{
"code": "66515009",
"display": "Glucagonoma, malignant (morphologic abnormality)",
"equivalence": "equivalent"
}
]
},
{
"code": "vipoma",
"display": "VIPOMA",
"target": [
{
"code": "31131002",
"display": "Vipoma, malignant (morphologic abnormality)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Condition Pancreatic Tumour Type

ConceptMap Genomic Condition Pituitary Tumour Type

Usage
ConceptMap used for the translation and recording of concepts when Condition.code field = pituitary tumour type

HTML View

Source	Equivalence	Target
gh-secreting (GH-SECRETING)	equivalent	254957009 (Somatotroph adenoma (disorder))
prolactinoma (PROLACTINOMA)	equivalent	134209002 (Prolactinoma (disorder))
non-functioning (NON-FUNCTIONING)	equivalent	254962005 (Functionless pituitary adenoma (disorder))
cushing-disease (CUSHINGS DISEASE)	equivalent	190502001 (Pituitary-dependent Cushing's disease (disorder))

Table View

ConceptMap.id[0]	genomics-condition-pituitarytumourtype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-condition-pituitarytumourtype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsConditionPituitaryTumourType
ConceptMap.title[0]	Genomics Condition Pituitary Tumour Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-11T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts when Condition.code field = pituitary tumour type
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	gh-secreting
ConceptMap.group[0].element[0].display[0]	GH-SECRETING
ConceptMap.group[0].element[0].target[0].code[0]	254957009
ConceptMap.group[0].element[0].target[0].display[0]	Somatotroph adenoma (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	prolactinoma
ConceptMap.group[0].element[1].display[0]	PROLACTINOMA
ConceptMap.group[0].element[1].target[0].code[0]	134209002
ConceptMap.group[0].element[1].target[0].display[0]	Prolactinoma (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	non-functioning
ConceptMap.group[0].element[2].display[0]	NON-FUNCTIONING
ConceptMap.group[0].element[2].target[0].code[0]	254962005
ConceptMap.group[0].element[2].target[0].display[0]	Functionless pituitary adenoma (disorder)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	cushing-disease
ConceptMap.group[0].element[3].display[0]	CUSHINGS DISEASE
ConceptMap.group[0].element[3].target[0].code[0]	190502001
ConceptMap.group[0].element[3].target[0].display[0]	Pituitary-dependent Cushing's disease (disorder)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-condition-pituitarytumourtype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-condition-pituitarytumourtype" />
<version value="0.1.0" />
<name value="GenomicsConditionPituitaryTumourType" />
<title value="Genomics Condition Pituitary Tumour Type" />
<status value="draft" />
<date value="2024-06-11T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts when Condition.code field = pituitary tumour type" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="gh-secreting" />
<display value="GH-SECRETING" />
<target>
<code value="254957009" />
<display value="Somatotroph adenoma (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="prolactinoma" />
<display value="PROLACTINOMA" />
<target>
<code value="134209002" />
<display value="Prolactinoma (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="non-functioning" />
<display value="NON-FUNCTIONING" />
<target>
<code value="254962005" />
<display value="Functionless pituitary adenoma (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cushing-disease" />
<display value="CUSHINGS DISEASE" />
<target>
<code value="190502001" />
<display value="Pituitary-dependent Cushing's disease (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-condition-pituitarytumourtype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-condition-pituitarytumourtype",
"version": "0.1.0",
"name": "GenomicsConditionPituitaryTumourType",
"title": "Genomics Condition Pituitary Tumour Type",
"status": "draft",
"date": "2024-06-11T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts when Condition.code field = pituitary tumour type",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "gh-secreting",
"display": "GH-SECRETING",
"target": [
{
"code": "254957009",
"display": "Somatotroph adenoma (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "prolactinoma",
"display": "PROLACTINOMA",
"target": [
{
"code": "134209002",
"display": "Prolactinoma (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "non-functioning",
"display": "NON-FUNCTIONING",
"target": [
{
"code": "254962005",
"display": "Functionless pituitary adenoma (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "cushing-disease",
"display": "CUSHINGS DISEASE",
"target": [
{
"code": "190502001",
"display": "Pituitary-dependent Cushing's disease (disorder)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Condition Pituitary Tumour Type

ConceptMap Genomic Condition Solid Tumour Type

Usage
ConceptMap used for the translation and recording of concepts for solid tumour types. This is intended for the element Condition.note

HTML View

Source	Equivalence	Target
solid (SOLID)	equivalent	35702001 (Solid (qualifier value))
primary (PRIMARY)	equivalent	63161005 (Principal (qualifier value))
metastatic (METASTATIC)	equivalent	1505291000004100 (Discontinuous metastatic spread (qualifier value))
unknown (UNKNOWN)	equivalent	261665006 (UNKNOWN)

Table View

ConceptMap.id[0]	genomics-condition-solidtumourtype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-condition-solidtumourtype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsConditionSolidTumourType
ConceptMap.title[0]	Genomics Condition Solid Tumour Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-11T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for solid tumour types. This is intended for the element Condition.note
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	solid
ConceptMap.group[0].element[0].display[0]	SOLID
ConceptMap.group[0].element[0].target[0].code[0]	35702001
ConceptMap.group[0].element[0].target[0].display[0]	Solid (qualifier value)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	primary
ConceptMap.group[0].element[1].display[0]	PRIMARY
ConceptMap.group[0].element[1].target[0].code[0]	63161005
ConceptMap.group[0].element[1].target[0].display[0]	Principal (qualifier value)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	metastatic
ConceptMap.group[0].element[2].display[0]	METASTATIC
ConceptMap.group[0].element[2].target[0].code[0]	1505291000004100
ConceptMap.group[0].element[2].target[0].display[0]	Discontinuous metastatic spread (qualifier value)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	unknown
ConceptMap.group[0].element[3].display[0]	UNKNOWN
ConceptMap.group[0].element[3].target[0].code[0]	261665006
ConceptMap.group[0].element[3].target[0].display[0]	UNKNOWN
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-condition-solidtumourtype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-condition-solidtumourtype" />
<version value="0.1.0" />
<name value="GenomicsConditionSolidTumourType" />
<title value="Genomics Condition Solid Tumour Type" />
<status value="draft" />
<date value="2024-06-11T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for solid tumour types. This is intended for the element Condition.note" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="solid" />
<display value="SOLID" />
<target>
<code value="35702001" />
<display value="Solid (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="primary" />
<display value="PRIMARY" />
<target>
<code value="63161005" />
<display value="Principal (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="metastatic" />
<display value="METASTATIC" />
<target>
<code value="1505291000004100" />
<display value="Discontinuous metastatic spread (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="unknown" />
<display value="UNKNOWN" />
<target>
<code value="261665006" />
<display value="UNKNOWN" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-condition-solidtumourtype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-condition-solidtumourtype",
"version": "0.1.0",
"name": "GenomicsConditionSolidTumourType",
"title": "Genomics Condition Solid Tumour Type",
"status": "draft",
"date": "2024-06-11T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for solid tumour types. This is intended for the element Condition.note",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "solid",
"display": "SOLID",
"target": [
{
"code": "35702001",
"display": "Solid (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "primary",
"display": "PRIMARY",
"target": [
{
"code": "63161005",
"display": "Principal (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "metastatic",
"display": "METASTATIC",
"target": [
{
"code": "1505291000004100",
"display": "Discontinuous metastatic spread (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "unknown",
"display": "UNKNOWN",
"target": [
{
"code": "261665006",
"display": "UNKNOWN",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Condition Solid Tumour Type

ConceptMap Genomic Specimen Tumour Cellularity

Usage
ConceptMap used for the translation and recording of concepts for the proportion of tumour cellularity. This is intended for the element Observation.valueCodeableConcept.

HTML View

to http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20

Source	Equivalence	Target
high (High)	equivalent	75540009 (High (qualifier value))
low (Low)	equivalent	62482003 (Low (qualifier value))
medium (Medium)	equivalent	255508009 (Medium (qualifier value))
very-high (Very High)	equivalent	260360000 (Very high (qualifier value))
very-low (Very Low)	equivalent	260360000 (Very low (qualifier value))

Table View

ConceptMap.id[0]	genomics-specimen-tumourcellularity
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-specimen-tumourcellularity
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsSpecimenTumourCellularity
ConceptMap.title[0]	Genomics Specimen Tumour Cellularity
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-05T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for the proportion of tumour cellularity. This is intended for the element Observation.valueCodeableConcept.
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	high
ConceptMap.group[0].element[0].display[0]	High
ConceptMap.group[0].element[0].target[0].code[0]	75540009
ConceptMap.group[0].element[0].target[0].display[0]	High (qualifier value)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	low
ConceptMap.group[0].element[1].display[0]	Low
ConceptMap.group[0].element[1].target[0].code[0]	62482003
ConceptMap.group[0].element[1].target[0].display[0]	Low (qualifier value)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	medium
ConceptMap.group[0].element[2].display[0]	Medium
ConceptMap.group[0].element[2].target[0].code[0]	255508009
ConceptMap.group[0].element[2].target[0].display[0]	Medium (qualifier value)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	very-high
ConceptMap.group[0].element[3].display[0]	Very High
ConceptMap.group[0].element[3].target[0].code[0]	260360000
ConceptMap.group[0].element[3].target[0].display[0]	Very high (qualifier value)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	very-low
ConceptMap.group[0].element[4].display[0]	Very Low
ConceptMap.group[0].element[4].target[0].code[0]	260360000
ConceptMap.group[0].element[4].target[0].display[0]	Very low (qualifier value)
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-specimen-tumourcellularity" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-specimen-tumourcellularity" />
<version value="0.1.0" />
<name value="GenomicsSpecimenTumourCellularity" />
<title value="Genomics Specimen Tumour Cellularity" />
<status value="draft" />
<date value="2024-08-05T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the proportion of tumour cellularity. This is intended for the element Observation.valueCodeableConcept." />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="high" />
<display value="High" />
<target>
<code value="75540009" />
<display value="High (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="low" />
<display value="Low" />
<target>
<code value="62482003" />
<display value="Low (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="medium" />
<display value="Medium" />
<target>
<code value="255508009" />
<display value="Medium (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="very-high" />
<display value="Very High" />
<target>
<code value="260360000" />
<display value="Very high (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="very-low" />
<display value="Very Low" />
<target>
<code value="260360000" />
<display value="Very low (qualifier value)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-specimen-tumourcellularity",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-specimen-tumourcellularity",
"version": "0.1.0",
"name": "GenomicsSpecimenTumourCellularity",
"title": "Genomics Specimen Tumour Cellularity",
"status": "draft",
"date": "2024-08-05T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the proportion of tumour cellularity. This is intended for the element Observation.valueCodeableConcept.",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C!%20362981000%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "high",
"display": "High",
"target": [
{
"code": "75540009",
"display": "High (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "low",
"display": "Low",
"target": [
{
"code": "62482003",
"display": "Low (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "medium",
"display": "Medium",
"target": [
{
"code": "255508009",
"display": "Medium (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "very-high",
"display": "Very High",
"target": [
{
"code": "260360000",
"display": "Very high (qualifier value)",
"equivalence": "equivalent"
}
]
},
{
"code": "very-low",
"display": "Very Low",
"target": [
{
"code": "260360000",
"display": "Very low (qualifier value)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Specimen Tumour Cellularity

ConceptMap Genomic Patient Birth Sex

Usage
ConceptMap used for the translation and recording of concept for sexual identity assigned to patient at birth. This is intended for the element Patient.extension:birthSex

HTML View

to UKCoreBirthSex

Source	Equivalence	Target
male (MALE)	equivalent	M (Male)
female (FEMALE)	equivalent	F (Female)
indeterminate (INDETERMINATE)	equivalent	UN (Undifferentiated)

Table View

ConceptMap.id[0]	genomics-patientbirthsex
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-patientbirthsex
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsPatientBirthSex
ConceptMap.title[0]	Genomics Patient Birth Sex
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-28T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concept for sexual identity assigned to patient at birth. This is intended for the element Patient.extension:birthSex
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender
ConceptMap.group[0].element[0].code[0]	male
ConceptMap.group[0].element[0].display[0]	MALE
ConceptMap.group[0].element[0].target[0].code[0]	M
ConceptMap.group[0].element[0].target[0].display[0]	Male
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	female
ConceptMap.group[0].element[1].display[0]	FEMALE
ConceptMap.group[0].element[1].target[0].code[0]	F
ConceptMap.group[0].element[1].target[0].display[0]	Female
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	indeterminate
ConceptMap.group[0].element[2].display[0]	INDETERMINATE
ConceptMap.group[0].element[2].target[0].code[0]	UN
ConceptMap.group[0].element[2].target[0].display[0]	Undifferentiated
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-patientbirthsex" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-patientbirthsex" />
<version value="0.1.0" />
<name value="GenomicsPatientBirthSex" />
<title value="Genomics Patient Birth Sex" />
<status value="draft" />
<date value="2024-06-28T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concept for sexual identity assigned to patient at birth. This is intended for the element Patient.extension:birthSex" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender" />
<element>
<code value="male" />
<display value="MALE" />
<target>
<code value="M" />
<display value="Male" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="female" />
<display value="FEMALE" />
<target>
<code value="F" />
<display value="Female" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="indeterminate" />
<display value="INDETERMINATE" />
<target>
<code value="UN" />
<display value="Undifferentiated" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-patientbirthsex",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-patientbirthsex",
"version": "0.1.0",
"name": "GenomicsPatientBirthSex",
"title": "Genomics Patient Birth Sex",
"status": "draft",
"date": "2024-06-28T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concept for sexual identity assigned to patient at birth. This is intended for the element Patient.extension:birthSex",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "https://fhir.hl7.org.uk/ValueSet/UKCore-BirthSex",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender",
"element": [
{
"code": "male",
"display": "MALE",
"target": [
{
"code": "M",
"display": "Male",
"equivalence": "equivalent"
}
]
},
{
"code": "female",
"display": "FEMALE",
"target": [
{
"code": "F",
"display": "Female",
"equivalence": "equivalent"
}
]
},
{
"code": "indeterminate",
"display": "INDETERMINATE",
"target": [
{
"code": "UN",
"display": "Undifferentiated",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Patient Birth Sex

ConceptMap Genomic Patient Born Status

Usage
ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus

HTML View

to http://hl7.org/fhir/ValueSet/patient-fetalstatus

Source	Equivalence	Target	Comment
fetal (Fetal)	equivalent	potential-for-live-birth (Potential For Live Birth)
unregisteredneonate (Unregistered Neonate)	unmatched		No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate).

Table View

ConceptMap.id[0]	genomics-patient-bornstatus
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-patient-bornstatus
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsPatientBornStatus
ConceptMap.title[0]	Genomics Patient Born Status
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-19T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://hl7.org/fhir/ValueSet/patient-fetalstatus
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://hl7.org/fhir/patient-fetalstatus
ConceptMap.group[0].element[0].code[0]	fetal
ConceptMap.group[0].element[0].display[0]	Fetal
ConceptMap.group[0].element[0].target[0].code[0]	potential-for-live-birth
ConceptMap.group[0].element[0].target[0].display[0]	Potential For Live Birth
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	unregisteredneonate
ConceptMap.group[0].element[1].display[0]	Unregistered Neonate
ConceptMap.group[0].element[1].target[0].equivalence[0]	unmatched
ConceptMap.group[0].element[1].target[0].comment[0]	No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate).

XML View

<id value="genomics-patient-bornstatus" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-patient-bornstatus" />
<version value="0.1.0" />
<name value="GenomicsPatientBornStatus" />
<title value="Genomics Patient Born Status" />
<status value="draft" />
<date value="2024-08-19T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://hl7.org/fhir/ValueSet/patient-fetalstatus" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://hl7.org/fhir/patient-fetalstatus" />
<element>
<code value="fetal" />
<display value="Fetal" />
<target>
<code value="potential-for-live-birth" />
<display value="Potential For Live Birth" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="unregisteredneonate" />
<display value="Unregistered Neonate" />
<target>
<equivalence value="unmatched" />
<comment value="No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)." />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-patient-bornstatus",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-patient-bornstatus",
"version": "0.1.0",
"name": "GenomicsPatientBornStatus",
"title": "Genomics Patient Born Status",
"status": "draft",
"date": "2024-08-19T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concept to indicate if the patient is a fetal. This is intended for the element Patient.extension:fetalStatus",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://hl7.org/fhir/ValueSet/patient-fetalstatus",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://hl7.org/fhir/patient-fetalstatus",
"element": [
{
"code": "fetal",
"display": "Fetal",
"target": [
{
"code": "potential-for-live-birth",
"display": "Potential For Live Birth",
"equivalence": "equivalent"
}
]
},
{
"code": "unregisteredneonate",
"display": "Unregistered Neonate",
"target": [
{
"equivalence": "unmatched",
"comment": "No suitable SNOMDED CT code is found. This should be captured by recording the birthDate on the Patient resource (Patient.birthDate)."
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Patient Born Status

ConceptMap Genomic Foetus Observed Sex

Usage
ConceptMap used for the translation and recording of concepts for the patient gender if the patient is identify as fetal. This is intended for the element Patient.gender

HTML View

to AdministrativeGender

Source	Equivalence	Target	Comment
female (Female)	equivalent	female (Female)
male (Male)	equivalent	male (Male)
undetermined (Undetermined)	inexact	other (Other)	The relationship here should be recorded as inexact, this is the only relevant concept from the required CodeSystem
unknown (Unknown)	equivalent	unknown (Unknown)

Table View

ConceptMap.id[0]	genomics-foetusobservedsex
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-foetusobservedsex
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsFoetusObservedSex
ConceptMap.title[0]	Genomics Foetus Observed Sex
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-19T16:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for the patient gender if the patient is identify as fetal. This is intended for the element Patient.gender
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://hl7.org/fhir/ValueSet/administrative-gender
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://hl7.org/fhir/administrative-gender
ConceptMap.group[0].element[0].code[0]	female
ConceptMap.group[0].element[0].display[0]	Female
ConceptMap.group[0].element[0].target[0].code[0]	female
ConceptMap.group[0].element[0].target[0].display[0]	Female
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	male
ConceptMap.group[0].element[1].display[0]	Male
ConceptMap.group[0].element[1].target[0].code[0]	male
ConceptMap.group[0].element[1].target[0].display[0]	Male
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	undetermined
ConceptMap.group[0].element[2].display[0]	Undetermined
ConceptMap.group[0].element[2].target[0].code[0]	other
ConceptMap.group[0].element[2].target[0].display[0]	Other
ConceptMap.group[0].element[2].target[0].equivalence[0]	inexact
ConceptMap.group[0].element[2].target[0].comment[0]	The relationship here should be recorded as inexact, this is the only relevant concept from the required CodeSystem
ConceptMap.group[0].element[3].code[0]	unknown
ConceptMap.group[0].element[3].display[0]	Unknown
ConceptMap.group[0].element[3].target[0].code[0]	unknown
ConceptMap.group[0].element[3].target[0].display[0]	Unknown
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-foetusobservedsex" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-foetusobservedsex" />
<version value="0.1.0" />
<name value="GenomicsFoetusObservedSex" />
<title value="Genomics Foetus Observed Sex" />
<status value="draft" />
<date value="2024-08-19T16:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the patient gender if the patient is identify as fetal. This is intended for the element Patient.gender" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://hl7.org/fhir/ValueSet/administrative-gender" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://hl7.org/fhir/administrative-gender" />
<element>
<code value="female" />
<display value="Female" />
<target>
<code value="female" />
<display value="Female" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="male" />
<display value="Male" />
<target>
<code value="male" />
<display value="Male" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="undetermined" />
<display value="Undetermined" />
<target>
<code value="other" />
<display value="Other" />
<equivalence value="inexact" />
<comment value="The relationship here should be recorded as inexact, this is the only relevant concept from the required CodeSystem" />
</target>
</element>
<element>
<code value="unknown" />
<display value="Unknown" />
<target>
<code value="unknown" />
<display value="Unknown" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-foetusobservedsex",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-foetusobservedsex",
"version": "0.1.0",
"name": "GenomicsFoetusObservedSex",
"title": "Genomics Foetus Observed Sex",
"status": "draft",
"date": "2024-08-19T16:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the patient gender if the patient is identify as fetal. This is intended for the element Patient.gender",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://hl7.org/fhir/ValueSet/administrative-gender",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://hl7.org/fhir/administrative-gender",
"element": [
{
"code": "female",
"display": "Female",
"target": [
{
"code": "female",
"display": "Female",
"equivalence": "equivalent"
}
]
},
{
"code": "male",
"display": "Male",
"target": [
{
"code": "male",
"display": "Male",
"equivalence": "equivalent"
}
]
},
{
"code": "undetermined",
"display": "Undetermined",
"target": [
{
"code": "other",
"display": "Other",
"equivalence": "inexact",
"comment": "The relationship here should be recorded as inexact, this is the only relevant concept from the required CodeSystem"
}
]
},
{
"code": "unknown",
"display": "Unknown",
"target": [
{
"code": "unknown",
"display": "Unknown",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Foetus Observed Sex

ConceptMap Genomic Report Delivery Method

Usage
ConceptMap used for the translation and recording of Genomics report delivery options. This is intended for the element PractitionerRole.telecom.value. The preferred delivery method will be indicated by rank=1 for the associated ContactPoint

HTML View

to ContactPointSystem

Source	Equivalence	Target	Comment
postal (POSTAL)	unmatched		The postal address will be captured under PractitionerRole.organization (retrieved from ODS)
digital-system (DIGITAL SYSTEM)	equivalent	url (URL)
email (EMAIL)	equivalent	email (Email)
other (OTHER)	equivalent	other (Other)

Table View

ConceptMap.id[0]	genomics-reportdeliverymethod
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-reportdeliverymethod
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsReportDeliveryMethod
ConceptMap.title[0]	Genomics Report Delivery Method
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-27T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of Genomics report delivery options. This is intended for the element PractitionerRole.telecom.value. The preferred delivery method will be indicated by rank=1 for the associated ContactPoint
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://hl7.org/fhir/ValueSet/contact-point-system
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://hl7.org/fhir/contact-point-system
ConceptMap.group[0].element[0].code[0]	postal
ConceptMap.group[0].element[0].display[0]	POSTAL
ConceptMap.group[0].element[0].target[0].equivalence[0]	unmatched
ConceptMap.group[0].element[0].target[0].comment[0]	The postal address will be captured under PractitionerRole.organization (retrieved from ODS)
ConceptMap.group[0].element[1].code[0]	digital-system
ConceptMap.group[0].element[1].display[0]	DIGITAL SYSTEM
ConceptMap.group[0].element[1].target[0].code[0]	url
ConceptMap.group[0].element[1].target[0].display[0]	URL
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	email
ConceptMap.group[0].element[2].display[0]	EMAIL
ConceptMap.group[0].element[2].target[0].code[0]	email
ConceptMap.group[0].element[2].target[0].display[0]	Email
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	other
ConceptMap.group[0].element[3].display[0]	OTHER
ConceptMap.group[0].element[3].target[0].code[0]	other
ConceptMap.group[0].element[3].target[0].display[0]	Other
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-reportdeliverymethod" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-reportdeliverymethod" />
<version value="0.1.0" />
<name value="GenomicsReportDeliveryMethod" />
<title value="Genomics Report Delivery Method" />
<status value="draft" />
<date value="2024-06-27T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of Genomics report delivery options. This is intended for the element PractitionerRole.telecom.value. The preferred delivery method will be indicated by rank=1 for the associated ContactPoint" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://hl7.org/fhir/ValueSet/contact-point-system" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://hl7.org/fhir/contact-point-system" />
<element>
<code value="postal" />
<display value="POSTAL" />
<target>
<equivalence value="unmatched" />
<comment value="The postal address will be captured under PractitionerRole.organization (retrieved from ODS)" />
</target>
</element>
<element>
<code value="digital-system" />
<display value="DIGITAL SYSTEM" />
<target>
<code value="url" />
<display value="URL" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="email" />
<display value="EMAIL" />
<target>
<code value="email" />
<display value="Email" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="OTHER" />
<target>
<code value="other" />
<display value="Other" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-reportdeliverymethod",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-reportdeliverymethod",
"version": "0.1.0",
"name": "GenomicsReportDeliveryMethod",
"title": "Genomics Report Delivery Method",
"status": "draft",
"date": "2024-06-27T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of Genomics report delivery options. This is intended for the element PractitionerRole.telecom.value. The preferred delivery method will be indicated by rank=1 for the associated ContactPoint",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://hl7.org/fhir/ValueSet/contact-point-system",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://hl7.org/fhir/contact-point-system",
"element": [
{
"code": "postal",
"display": "POSTAL",
"target": [
{
"equivalence": "unmatched",
"comment": "The postal address will be captured under PractitionerRole.organization (retrieved from ODS)"
}
]
},
{
"code": "digital-system",
"display": "DIGITAL SYSTEM",
"target": [
{
"code": "url",
"display": "URL",
"equivalence": "equivalent"
}
]
},
{
"code": "email",
"display": "EMAIL",
"target": [
{
"code": "email",
"display": "Email",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "OTHER",
"target": [
{
"code": "other",
"display": "Other",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Report Delivery Method

ConceptMap Genomic Patient Pregnancy Type

Usage
ConceptMap used for the translation and recording of concepts for patient types of conception. This is intended for the element Procedure.code

HTML View

to http://snomed.info/sct?fhir_vs=isa/138875005

Source	Equivalence	Target
spontaneous-conception (SPONTANEOUS CONCEPTION)	equivalent	1372941000168104 (Spontaneous conception)
iui-partners-sperm (IUI PARTNERS SPERM)	equivalent	426389008 (Intrauterine insemination using partner sperm)
iui-donor-sperm (IUI DONOR SPERM)	equivalent	426250000 (Intrauterine insemination using donor sperm)
ivf-own-egg (IVF OWN EGG)	subsumes	52637005 (In vitro fertilisation)
ivf-donor-egg (IVF DONOR EGG)	equivalent	425866000 (In vitro fertilisation using donor eggs)
ivf-partners-sperm (IVF PARTNERS SPERM)	subsumes	52637005 (In vitro fertilisation)
ivf-donor-sperm (IVF DONOR SPERM)	equivalent	427664000 (IVF - In vitro fertilisation using donor sperm)

Table View

ConceptMap.id[0]	genomics-patientpregnancytype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-patientpregnancytype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsPatientPregnancyType
ConceptMap.title[0]	Genomics Patient Pregnancy Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-07-04T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for patient types of conception. This is intended for the element Procedure.code
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=isa/138875005
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	spontaneous-conception
ConceptMap.group[0].element[0].display[0]	SPONTANEOUS CONCEPTION
ConceptMap.group[0].element[0].target[0].code[0]	1372941000168104
ConceptMap.group[0].element[0].target[0].display[0]	Spontaneous conception
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	iui-partners-sperm
ConceptMap.group[0].element[1].display[0]	IUI PARTNERS SPERM
ConceptMap.group[0].element[1].target[0].code[0]	426389008
ConceptMap.group[0].element[1].target[0].display[0]	Intrauterine insemination using partner sperm
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	iui-donor-sperm
ConceptMap.group[0].element[2].display[0]	IUI DONOR SPERM
ConceptMap.group[0].element[2].target[0].code[0]	426250000
ConceptMap.group[0].element[2].target[0].display[0]	Intrauterine insemination using donor sperm
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	ivf-own-egg
ConceptMap.group[0].element[3].display[0]	IVF OWN EGG
ConceptMap.group[0].element[3].target[0].code[0]	52637005
ConceptMap.group[0].element[3].target[0].display[0]	In vitro fertilisation
ConceptMap.group[0].element[3].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[4].code[0]	ivf-donor-egg
ConceptMap.group[0].element[4].display[0]	IVF DONOR EGG
ConceptMap.group[0].element[4].target[0].code[0]	425866000
ConceptMap.group[0].element[4].target[0].display[0]	In vitro fertilisation using donor eggs
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	ivf-partners-sperm
ConceptMap.group[0].element[5].display[0]	IVF PARTNERS SPERM
ConceptMap.group[0].element[5].target[0].code[0]	52637005
ConceptMap.group[0].element[5].target[0].display[0]	In vitro fertilisation
ConceptMap.group[0].element[5].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[6].code[0]	ivf-donor-sperm
ConceptMap.group[0].element[6].display[0]	IVF DONOR SPERM
ConceptMap.group[0].element[6].target[0].code[0]	427664000
ConceptMap.group[0].element[6].target[0].display[0]	IVF - In vitro fertilisation using donor sperm
ConceptMap.group[0].element[6].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-patientpregnancytype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-patientpregnancytype" />
<version value="0.1.0" />
<name value="GenomicsPatientPregnancyType" />
<title value="Genomics Patient Pregnancy Type" />
<status value="draft" />
<date value="2024-07-04T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for patient types of conception. This is intended for the element Procedure.code" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=isa/138875005" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="spontaneous-conception" />
<display value="SPONTANEOUS CONCEPTION" />
<target>
<code value="1372941000168104" />
<display value="Spontaneous conception" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="iui-partners-sperm" />
<display value="IUI PARTNERS SPERM" />
<target>
<code value="426389008" />
<display value="Intrauterine insemination using partner sperm" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="iui-donor-sperm" />
<display value="IUI DONOR SPERM" />
<target>
<code value="426250000" />
<display value="Intrauterine insemination using donor sperm" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="ivf-own-egg" />
<display value="IVF OWN EGG" />
<target>
<code value="52637005" />
<display value="In vitro fertilisation" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="ivf-donor-egg" />
<display value="IVF DONOR EGG" />
<target>
<code value="425866000" />
<display value="In vitro fertilisation using donor eggs" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="ivf-partners-sperm" />
<display value="IVF PARTNERS SPERM" />
<target>
<code value="52637005" />
<display value="In vitro fertilisation" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="ivf-donor-sperm" />
<display value="IVF DONOR SPERM" />
<target>
<code value="427664000" />
<display value="IVF - In vitro fertilisation using donor sperm" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-patientpregnancytype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-patientpregnancytype",
"version": "0.1.0",
"name": "GenomicsPatientPregnancyType",
"title": "Genomics Patient Pregnancy Type",
"status": "draft",
"date": "2024-07-04T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for patient types of conception. This is intended for the element Procedure.code",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=isa/138875005",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "spontaneous-conception",
"display": "SPONTANEOUS CONCEPTION",
"target": [
{
"code": "1372941000168104",
"display": "Spontaneous conception",
"equivalence": "equivalent"
}
]
},
{
"code": "iui-partners-sperm",
"display": "IUI PARTNERS SPERM",
"target": [
{
"code": "426389008",
"display": "Intrauterine insemination using partner sperm",
"equivalence": "equivalent"
}
]
},
{
"code": "iui-donor-sperm",
"display": "IUI DONOR SPERM",
"target": [
{
"code": "426250000",
"display": "Intrauterine insemination using donor sperm",
"equivalence": "equivalent"
}
]
},
{
"code": "ivf-own-egg",
"display": "IVF OWN EGG",
"target": [
{
"code": "52637005",
"display": "In vitro fertilisation",
"equivalence": "subsumes"
}
]
},
{
"code": "ivf-donor-egg",
"display": "IVF DONOR EGG",
"target": [
{
"code": "425866000",
"display": "In vitro fertilisation using donor eggs",
"equivalence": "equivalent"
}
]
},
{
"code": "ivf-partners-sperm",
"display": "IVF PARTNERS SPERM",
"target": [
{
"code": "52637005",
"display": "In vitro fertilisation",
"equivalence": "subsumes"
}
]
},
{
"code": "ivf-donor-sperm",
"display": "IVF DONOR SPERM",
"target": [
{
"code": "427664000",
"display": "IVF - In vitro fertilisation using donor sperm",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Patient Pregnancy Type

ConceptMap Genomic Procedure Transfusion Type

Usage
ConceptMap used for the translation and recording of concept for type of transfusion procedure that a patient may undergo. .i.e, value for procedure.code field

HTML View

to http://snomed.info/sct?fhir_vs=ecl/%3C%3C%205447007%20

Source	Equivalence	Target
packed-red-blood-cells (Packed Red Blood Cells)	equivalent	71493000 (Transfusion of packed red blood cells (procedure))
plasma (Plasma)	equivalent	13569004 (Transfusion of plasma (procedure))
platelets (Platelets)	equivalent	12719002 (Platelet transfusion (procedure))
unknown (UNKNOWN)	specializes	5447007 (Transfusion (procedure))

Table View

ConceptMap.id[0]	genomics-procedure-transfusiontype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-procedure-transfusiontype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsProcedureTransfusionType
ConceptMap.title[0]	Genomics Procedure Transfusion Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-07-12T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concept for type of transfusion procedure that a patient may undergo. .i.e, value for procedure.code field
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=ecl/%3C%3C%205447007%20
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	packed-red-blood-cells
ConceptMap.group[0].element[0].display[0]	Packed Red Blood Cells
ConceptMap.group[0].element[0].target[0].code[0]	71493000
ConceptMap.group[0].element[0].target[0].display[0]	Transfusion of packed red blood cells (procedure)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	plasma
ConceptMap.group[0].element[1].display[0]	Plasma
ConceptMap.group[0].element[1].target[0].code[0]	13569004
ConceptMap.group[0].element[1].target[0].display[0]	Transfusion of plasma (procedure)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	platelets
ConceptMap.group[0].element[2].display[0]	Platelets
ConceptMap.group[0].element[2].target[0].code[0]	12719002
ConceptMap.group[0].element[2].target[0].display[0]	Platelet transfusion (procedure)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	unknown
ConceptMap.group[0].element[3].display[0]	UNKNOWN
ConceptMap.group[0].element[3].target[0].code[0]	5447007
ConceptMap.group[0].element[3].target[0].display[0]	Transfusion (procedure)
ConceptMap.group[0].element[3].target[0].equivalence[0]	specializes

XML View

<id value="genomics-procedure-transfusiontype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-procedure-transfusiontype" />
<version value="0.1.0" />
<name value="GenomicsProcedureTransfusionType" />
<title value="Genomics Procedure Transfusion Type" />
<status value="draft" />
<date value="2024-07-12T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concept for type of transfusion procedure that a patient may undergo. .i.e, value for procedure.code field" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C%3C%205447007%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="packed-red-blood-cells" />
<display value="Packed Red Blood Cells" />
<target>
<code value="71493000" />
<display value="Transfusion of packed red blood cells (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="plasma" />
<display value="Plasma" />
<target>
<code value="13569004" />
<display value="Transfusion of plasma (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="platelets" />
<display value="Platelets" />
<target>
<code value="12719002" />
<display value="Platelet transfusion (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="unknown" />
<display value="UNKNOWN" />
<target>
<code value="5447007" />
<display value="Transfusion (procedure)" />
<equivalence value="specializes" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-procedure-transfusiontype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-procedure-transfusiontype",
"version": "0.1.0",
"name": "GenomicsProcedureTransfusionType",
"title": "Genomics Procedure Transfusion Type",
"status": "draft",
"date": "2024-07-12T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concept for type of transfusion procedure that a patient may undergo. .i.e, value for procedure.code field",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%205447007%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "packed-red-blood-cells",
"display": "Packed Red Blood Cells",
"target": [
{
"code": "71493000",
"display": "Transfusion of packed red blood cells (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "plasma",
"display": "Plasma",
"target": [
{
"code": "13569004",
"display": "Transfusion of plasma (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "platelets",
"display": "Platelets",
"target": [
{
"code": "12719002",
"display": "Platelet transfusion (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "unknown",
"display": "UNKNOWN",
"target": [
{
"code": "5447007",
"display": "Transfusion (procedure)",
"equivalence": "specializes"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Procedure Transfusion Type

ConceptMap Genomic Type of Transplant Procedure

Usage
ConceptMap used for the translation and recording concepts for transplantation procedure. This is intended for the element Procedure.code

HTML View

Source Concept	Equivalence	Target Concept	Comment
Code [https://future.nhs.uk/NHSgenomics/view?objectId=222250117]		Code [http://snomed.info/sct]
bilateral-single-lung (BILATERAL SINGLE LUNG)	Equivalent	232660006 (Bilateral sequential single lung transplant (procedure))
bone-marrow (BONE MARROW)	Equivalent	23719005 (Transplantation of bone marrow (procedure))
double-kidney (DOUBLE KIDNEY)	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided that this transplation procedure is for double kidney. Respective procedures should be recorded in a separate Procedure resource.
double-lung (DOUBLE LUNG)	Equivalent	232658009 (Double lung transplant (procedure))
enbloc-kidney (EN-BLOCKIDNEY)	Unmatched		This concept should be recored by free text under Procedure.code. No suitable SNOMED CT code existed for it at this time but process are being iniated to ensure the SNOMED Team added it to the SNOMED Vocab.
heart (HEART)	Equivalent	32413006 (Transplantation of heart (procedure))
heart-and-kidney (HEART AND KIDNEY)	Narrower	32413006 (Transplantation of heart (procedure))	When this concept is used, further notes should be provided to state that this transplantation procedure is for a combined heart and kidney transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
heart-and-kidney (HEART AND KIDNEY)	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that this transplantation procedure is for combined heart and kidney procedure. Respective procedures should be recorded in a separate Procedure resource.
heart-and-liver (HEART AND LIVER)	Narrower	32413006 (Transplantation of heart (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
heart-and-liver (HEART AND LIVER)	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
heart-lung (HEART LUNG)	Equivalent	32477003 (Heart and lung transplant)
heart-lung-and-kidney (HEART LUNG AND KIDNEY)	Narrower	32413006 (Transplantation of heart (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	88039007 (Transplant of lung (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
heart-lung-and-liver (HEART LUNG AND LIVER)	Narrower	32413006 (Transplantation of heart (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	88039007 (Transplant of lung (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
if-liver-bowel-pancreas (IF LIVER BOWEL PANCREAS)	Narrower	18027006 (Transplantation of liver (procedure))	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	56283009 (Transplantation of small intestine (procedure))	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	62438007 (Transplantation of pancreas (procedure))	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
if-liver-only (IF LIVER ONLY)	Equivalent	18027006 (Transplantation of liver (procedure))	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource.
if-multivisceral (IF MULTIVISCERAL)	Equivalent	118158008 (Gastrointestinal tract transplantation (procedure))	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource.
kidney (KIDNEY)	Equivalent	70536003 (Transplant of kidney (procedure))
kidney-and-pancreas (KIDNEY AND PANCREAS)	Equivalent	6471000179103 (Transplantation of kidney and pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
kidney-and-pancreas-islets (KIDNEY AND PANCREAS ISLETS)	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	128531006 (Islet cell transplant (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
liver (LIVER)	Equivalent	18027006 (Transplantation of liver (procedure))
liver-and-kidney (LIVER AND KIDNEY)	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
liver-and-kidney (LIVER AND KIDNEY)	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
liver-and-pancreas (LIVER AND PANCREAS)	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
liver-and-pancreas (LIVER AND PANCREAS)	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
liver-kidney-and-pancreas (LIVER KIDNEY AND PANCREAS)	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
lung (LUNG)	Equivalent	88039007 (Transplant of lung (procedure))
lung-and-kidney (LUNG AND KIDNEY)	Narrower	88039007 (Transplant of lung (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
lung-and-kidney (LUNG AND KIDNEY)	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
lung-and-kidney-and-liver (LUNG AND KIDNEY AND LIVER)	Narrower	88039007 (Transplant of lung (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
lung-and-liver (LUNG AND LIVER)	Narrower	88039007 (Transplant of lung (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
lung-and-liver (LUNG AND LIVER)	Narrower	18027006 (Transplantation of liver (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ocular-tissue (OCULAR TISSUE)	Wider	120095006 (Eye structure transplantation (procedure))
pancreas (PANCREAS ONLY)	Equivalent	62438007 (Transplantation of pancreas (procedure))
pancreas-and-liver (PANCREAS AND LIVER)	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
pancreas-and-liver (PANCREAS AND LIVER)	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
pancreas-islets (PANCREAS ISLETS)	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
pancreas-islets (PANCREAS ISLETS)	Narrower	128531006 (Islet cell transplant (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
pancreas-kidney (PANCREAS KIDNEY)	Equivalent	6471000179103 (Transplantation of kidney and pancreas (procedure))
pancreas-liver-and-kidney (PANCREAS LIVER AND KIDNEY)	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	62438007 (Transplantation of pancreas (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
	Narrower	70536003 (Transplant of kidney (procedure))	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
partial-lung (PARTIAL LUNG)	Equivalent	429332008 (Transplantation of single lobe of lung (procedure))
stem-cell (STEM CELL)	Equivalent	285581000000102 (Transplantation of stem cells (procedure))

Table View

ConceptMap.id[0]	genomics-typeof-transplantprocedure
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-typeof-transplantprocedure
ConceptMap.version[0]	0.0.1
ConceptMap.name[0]	GenomicsTypeofTransplantProcedure
ConceptMap.title[0]	Genomics Type of Transplant Procedure
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-12T17:40:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording concepts for transplantation procedure. This is intended for the element Procedure.code
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	bilateral-single-lung
ConceptMap.group[0].element[0].display[0]	BILATERAL SINGLE LUNG
ConceptMap.group[0].element[0].target[0].code[0]	232660006
ConceptMap.group[0].element[0].target[0].display[0]	Bilateral sequential single lung transplant (procedure)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	bone-marrow
ConceptMap.group[0].element[1].display[0]	BONE MARROW
ConceptMap.group[0].element[1].target[0].code[0]	23719005
ConceptMap.group[0].element[1].target[0].display[0]	Transplantation of bone marrow (procedure)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	double-kidney
ConceptMap.group[0].element[2].display[0]	DOUBLE KIDNEY
ConceptMap.group[0].element[2].target[0].code[0]	70536003
ConceptMap.group[0].element[2].target[0].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[2].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[2].target[0].comment[0]	When this concept is used, further notes should be provided that this transplation procedure is for double kidney. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[3].code[0]	double-lung
ConceptMap.group[0].element[3].display[0]	DOUBLE LUNG
ConceptMap.group[0].element[3].target[0].code[0]	232658009
ConceptMap.group[0].element[3].target[0].display[0]	Double lung transplant (procedure)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	enbloc-kidney
ConceptMap.group[0].element[4].display[0]	EN-BLOCKIDNEY
ConceptMap.group[0].element[4].target[0].equivalence[0]	unmatched
ConceptMap.group[0].element[4].target[0].comment[0]	This concept should be recored by free text under Procedure.code. No suitable SNOMED CT code existed for it at this time but process are being iniated to ensure the SNOMED Team added it to the SNOMED Vocab.
ConceptMap.group[0].element[5].code[0]	heart
ConceptMap.group[0].element[5].display[0]	HEART
ConceptMap.group[0].element[5].target[0].code[0]	32413006
ConceptMap.group[0].element[5].target[0].display[0]	Transplantation of heart (procedure)
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	heart-and-kidney
ConceptMap.group[0].element[6].display[0]	HEART AND KIDNEY
ConceptMap.group[0].element[6].target[0].code[0]	32413006
ConceptMap.group[0].element[6].target[0].display[0]	Transplantation of heart (procedure)
ConceptMap.group[0].element[6].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[6].target[0].comment[0]	When this concept is used, further notes should be provided to state that this transplantation procedure is for a combined heart and kidney transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[6].target[1].code[0]	70536003
ConceptMap.group[0].element[6].target[1].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[6].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[6].target[1].comment[0]	When this concept is used, further notes should be provided to state that this transplantation procedure is for combined heart and kidney procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[7].code[0]	heart-and-liver
ConceptMap.group[0].element[7].display[0]	HEART AND LIVER
ConceptMap.group[0].element[7].target[0].code[0]	32413006
ConceptMap.group[0].element[7].target[0].display[0]	Transplantation of heart (procedure)
ConceptMap.group[0].element[7].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[7].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[7].target[1].code[0]	18027006
ConceptMap.group[0].element[7].target[1].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[7].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[7].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[8].code[0]	heart-lung
ConceptMap.group[0].element[8].display[0]	HEART LUNG
ConceptMap.group[0].element[8].target[0].code[0]	32477003
ConceptMap.group[0].element[8].target[0].display[0]	Heart and lung transplant
ConceptMap.group[0].element[8].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[9].code[0]	heart-lung-and-kidney
ConceptMap.group[0].element[9].display[0]	HEART LUNG AND KIDNEY
ConceptMap.group[0].element[9].target[0].code[0]	32413006
ConceptMap.group[0].element[9].target[0].display[0]	Transplantation of heart (procedure)
ConceptMap.group[0].element[9].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[9].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[9].target[1].code[0]	88039007
ConceptMap.group[0].element[9].target[1].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[9].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[9].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[9].target[2].code[0]	70536003
ConceptMap.group[0].element[9].target[2].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[9].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[9].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[10].code[0]	heart-lung-and-liver
ConceptMap.group[0].element[10].display[0]	HEART LUNG AND LIVER
ConceptMap.group[0].element[10].target[0].code[0]	32413006
ConceptMap.group[0].element[10].target[0].display[0]	Transplantation of heart (procedure)
ConceptMap.group[0].element[10].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[10].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[10].target[1].code[0]	88039007
ConceptMap.group[0].element[10].target[1].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[10].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[10].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[10].target[2].code[0]	18027006
ConceptMap.group[0].element[10].target[2].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[10].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[10].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[11].code[0]	if-liver-bowel-pancreas
ConceptMap.group[0].element[11].display[0]	IF LIVER BOWEL PANCREAS
ConceptMap.group[0].element[11].target[0].code[0]	18027006
ConceptMap.group[0].element[11].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[11].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[11].target[0].comment[0]	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[11].target[1].code[0]	56283009
ConceptMap.group[0].element[11].target[1].display[0]	Transplantation of small intestine (procedure)
ConceptMap.group[0].element[11].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[11].target[1].comment[0]	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[11].target[2].code[0]	62438007
ConceptMap.group[0].element[11].target[2].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[11].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[11].target[2].comment[0]	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[12].code[0]	if-liver-only
ConceptMap.group[0].element[12].display[0]	IF LIVER ONLY
ConceptMap.group[0].element[12].target[0].code[0]	18027006
ConceptMap.group[0].element[12].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[12].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[12].target[0].comment[0]	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[13].code[0]	if-multivisceral
ConceptMap.group[0].element[13].display[0]	IF MULTIVISCERAL
ConceptMap.group[0].element[13].target[0].code[0]	118158008
ConceptMap.group[0].element[13].target[0].display[0]	Gastrointestinal tract transplantation (procedure)
ConceptMap.group[0].element[13].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[13].target[0].comment[0]	A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009\|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[14].code[0]	kidney
ConceptMap.group[0].element[14].display[0]	KIDNEY
ConceptMap.group[0].element[14].target[0].code[0]	70536003
ConceptMap.group[0].element[14].target[0].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[14].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[15].code[0]	kidney-and-pancreas
ConceptMap.group[0].element[15].display[0]	KIDNEY AND PANCREAS
ConceptMap.group[0].element[15].target[0].code[0]	6471000179103
ConceptMap.group[0].element[15].target[0].display[0]	Transplantation of kidney and pancreas (procedure)
ConceptMap.group[0].element[15].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[15].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[16].code[0]	kidney-and-pancreas-islets
ConceptMap.group[0].element[16].display[0]	KIDNEY AND PANCREAS ISLETS
ConceptMap.group[0].element[16].target[0].code[0]	70536003
ConceptMap.group[0].element[16].target[0].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[16].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[16].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[16].target[1].code[0]	128531006
ConceptMap.group[0].element[16].target[1].display[0]	Islet cell transplant (procedure)
ConceptMap.group[0].element[16].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[16].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[16].target[2].code[0]	62438007
ConceptMap.group[0].element[16].target[2].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[16].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[16].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[17].code[0]	liver
ConceptMap.group[0].element[17].display[0]	LIVER
ConceptMap.group[0].element[17].target[0].code[0]	18027006
ConceptMap.group[0].element[17].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[17].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[18].code[0]	liver-and-kidney
ConceptMap.group[0].element[18].display[0]	LIVER AND KIDNEY
ConceptMap.group[0].element[18].target[0].code[0]	18027006
ConceptMap.group[0].element[18].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[18].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[18].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[18].target[1].code[0]	70536003
ConceptMap.group[0].element[18].target[1].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[18].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[18].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[19].code[0]	liver-and-pancreas
ConceptMap.group[0].element[19].display[0]	LIVER AND PANCREAS
ConceptMap.group[0].element[19].target[0].code[0]	18027006
ConceptMap.group[0].element[19].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[19].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[19].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[19].target[1].code[0]	62438007
ConceptMap.group[0].element[19].target[1].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[19].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[19].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[20].code[0]	liver-kidney-and-pancreas
ConceptMap.group[0].element[20].display[0]	LIVER KIDNEY AND PANCREAS
ConceptMap.group[0].element[20].target[0].code[0]	18027006
ConceptMap.group[0].element[20].target[0].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[20].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[20].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[20].target[1].code[0]	70536003
ConceptMap.group[0].element[20].target[1].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[20].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[20].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[20].target[2].code[0]	62438007
ConceptMap.group[0].element[20].target[2].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[20].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[20].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[21].code[0]	lung
ConceptMap.group[0].element[21].display[0]	LUNG
ConceptMap.group[0].element[21].target[0].code[0]	88039007
ConceptMap.group[0].element[21].target[0].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[21].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[22].code[0]	lung-and-kidney
ConceptMap.group[0].element[22].display[0]	LUNG AND KIDNEY
ConceptMap.group[0].element[22].target[0].code[0]	88039007
ConceptMap.group[0].element[22].target[0].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[22].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[22].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[22].target[1].code[0]	70536003
ConceptMap.group[0].element[22].target[1].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[22].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[22].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[23].code[0]	lung-and-kidney-and-liver
ConceptMap.group[0].element[23].display[0]	LUNG AND KIDNEY AND LIVER
ConceptMap.group[0].element[23].target[0].code[0]	88039007
ConceptMap.group[0].element[23].target[0].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[23].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[23].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[23].target[1].code[0]	70536003
ConceptMap.group[0].element[23].target[1].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[23].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[23].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[23].target[2].code[0]	18027006
ConceptMap.group[0].element[23].target[2].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[23].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[23].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[24].code[0]	lung-and-liver
ConceptMap.group[0].element[24].display[0]	LUNG AND LIVER
ConceptMap.group[0].element[24].target[0].code[0]	88039007
ConceptMap.group[0].element[24].target[0].display[0]	Transplant of lung (procedure)
ConceptMap.group[0].element[24].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[24].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[24].target[1].code[0]	18027006
ConceptMap.group[0].element[24].target[1].display[0]	Transplantation of liver (procedure)
ConceptMap.group[0].element[24].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[24].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[25].code[0]	ocular-tissue
ConceptMap.group[0].element[25].display[0]	OCULAR TISSUE
ConceptMap.group[0].element[25].target[0].code[0]	120095006
ConceptMap.group[0].element[25].target[0].display[0]	Eye structure transplantation (procedure)
ConceptMap.group[0].element[25].target[0].equivalence[0]	wider
ConceptMap.group[0].element[26].code[0]	pancreas
ConceptMap.group[0].element[26].display[0]	PANCREAS ONLY
ConceptMap.group[0].element[26].target[0].code[0]	62438007
ConceptMap.group[0].element[26].target[0].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[26].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[27].code[0]	pancreas-and-liver
ConceptMap.group[0].element[27].display[0]	PANCREAS AND LIVER
ConceptMap.group[0].element[27].target[0].code[0]	62438007
ConceptMap.group[0].element[27].target[0].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[27].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[27].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[27].target[1].code[0]	62438007
ConceptMap.group[0].element[27].target[1].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[27].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[27].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[28].code[0]	pancreas-islets
ConceptMap.group[0].element[28].display[0]	PANCREAS ISLETS
ConceptMap.group[0].element[28].target[0].code[0]	62438007
ConceptMap.group[0].element[28].target[0].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[28].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[28].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[28].target[1].code[0]	128531006
ConceptMap.group[0].element[28].target[1].display[0]	Islet cell transplant (procedure)
ConceptMap.group[0].element[28].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[28].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[29].code[0]	pancreas-kidney
ConceptMap.group[0].element[29].display[0]	PANCREAS KIDNEY
ConceptMap.group[0].element[29].target[0].code[0]	6471000179103
ConceptMap.group[0].element[29].target[0].display[0]	Transplantation of kidney and pancreas (procedure)
ConceptMap.group[0].element[29].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[30].code[0]	pancreas-liver-and-kidney
ConceptMap.group[0].element[30].display[0]	PANCREAS LIVER AND KIDNEY
ConceptMap.group[0].element[30].target[0].code[0]	62438007
ConceptMap.group[0].element[30].target[0].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[30].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[30].target[0].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[30].target[1].code[0]	62438007
ConceptMap.group[0].element[30].target[1].display[0]	Transplantation of pancreas (procedure)
ConceptMap.group[0].element[30].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[30].target[1].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[30].target[2].code[0]	70536003
ConceptMap.group[0].element[30].target[2].display[0]	Transplant of kidney (procedure)
ConceptMap.group[0].element[30].target[2].equivalence[0]	narrower
ConceptMap.group[0].element[30].target[2].comment[0]	When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource.
ConceptMap.group[0].element[31].code[0]	partial-lung
ConceptMap.group[0].element[31].display[0]	PARTIAL LUNG
ConceptMap.group[0].element[31].target[0].code[0]	429332008
ConceptMap.group[0].element[31].target[0].display[0]	Transplantation of single lobe of lung (procedure)
ConceptMap.group[0].element[31].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[32].code[0]	stem-cell
ConceptMap.group[0].element[32].display[0]	STEM CELL
ConceptMap.group[0].element[32].target[0].code[0]	285581000000102
ConceptMap.group[0].element[32].target[0].display[0]	Transplantation of stem cells (procedure)
ConceptMap.group[0].element[32].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-typeof-transplantprocedure" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-typeof-transplantprocedure" />
<version value="0.0.1" />
<name value="GenomicsTypeofTransplantProcedure" />
<title value="Genomics Type of Transplant Procedure" />
<status value="draft" />
<date value="2024-08-12T17:40:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording concepts for transplantation procedure. This is intended for the element Procedure.code" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="bilateral-single-lung" />
<display value="BILATERAL SINGLE LUNG" />
<target>
<code value="232660006" />
<display value="Bilateral sequential single lung transplant (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="bone-marrow" />
<display value="BONE MARROW" />
<target>
<code value="23719005" />
<display value="Transplantation of bone marrow (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="double-kidney" />
<display value="DOUBLE KIDNEY" />
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided that this transplation procedure is for double kidney. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="double-lung" />
<display value="DOUBLE LUNG" />
<target>
<code value="232658009" />
<display value="Double lung transplant (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="enbloc-kidney" />
<display value="EN-BLOCKIDNEY" />
<target>
<equivalence value="unmatched" />
<comment value="This concept should be recored by free text under Procedure.code. No suitable SNOMED CT code existed for it at this time but process are being iniated to ensure the SNOMED Team added it to the SNOMED Vocab." />
</target>
</element>
<element>
<code value="heart" />
<display value="HEART" />
<target>
<code value="32413006" />
<display value="Transplantation of heart (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="heart-and-kidney" />
<display value="HEART AND KIDNEY" />
<target>
<code value="32413006" />
<display value="Transplantation of heart (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that this transplantation procedure is for a combined heart and kidney transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that this transplantation procedure is for combined heart and kidney procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="heart-and-liver" />
<display value="HEART AND LIVER" />
<target>
<code value="32413006" />
<display value="Transplantation of heart (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="heart-lung" />
<display value="HEART LUNG" />
<target>
<code value="32477003" />
<display value="Heart and lung transplant" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="heart-lung-and-kidney" />
<display value="HEART LUNG AND KIDNEY" />
<target>
<code value="32413006" />
<display value="Transplantation of heart (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="heart-lung-and-liver" />
<display value="HEART LUNG AND LIVER" />
<target>
<code value="32413006" />
<display value="Transplantation of heart (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="if-liver-bowel-pancreas" />
<display value="IF LIVER BOWEL PANCREAS" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="56283009" />
<display value="Transplantation of small intestine (procedure)" />
<equivalence value="narrower" />
<comment value="A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="if-liver-only" />
<display value="IF LIVER ONLY" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="equivalent" />
<comment value="A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="if-multivisceral" />
<display value="IF MULTIVISCERAL" />
<target>
<code value="118158008" />
<display value="Gastrointestinal tract transplantation (procedure)" />
<equivalence value="equivalent" />
<comment value="A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="kidney" />
<display value="KIDNEY" />
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="kidney-and-pancreas" />
<display value="KIDNEY AND PANCREAS" />
<target>
<code value="6471000179103" />
<display value="Transplantation of kidney and pancreas (procedure)" />
<equivalence value="equivalent" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="kidney-and-pancreas-islets" />
<display value="KIDNEY AND PANCREAS ISLETS" />
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="128531006" />
<display value="Islet cell transplant (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="liver" />
<display value="LIVER" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="liver-and-kidney" />
<display value="LIVER AND KIDNEY" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="liver-and-pancreas" />
<display value="LIVER AND PANCREAS" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="liver-kidney-and-pancreas" />
<display value="LIVER KIDNEY AND PANCREAS" />
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="lung" />
<display value="LUNG" />
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="lung-and-kidney" />
<display value="LUNG AND KIDNEY" />
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="lung-and-kidney-and-liver" />
<display value="LUNG AND KIDNEY AND LIVER" />
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="lung-and-liver" />
<display value="LUNG AND LIVER" />
<target>
<code value="88039007" />
<display value="Transplant of lung (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="18027006" />
<display value="Transplantation of liver (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="ocular-tissue" />
<display value="OCULAR TISSUE" />
<target>
<code value="120095006" />
<display value="Eye structure transplantation (procedure)" />
<equivalence value="wider" />
</target>
</element>
<element>
<code value="pancreas" />
<display value="PANCREAS ONLY" />
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="pancreas-and-liver" />
<display value="PANCREAS AND LIVER" />
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="pancreas-islets" />
<display value="PANCREAS ISLETS" />
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="128531006" />
<display value="Islet cell transplant (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="pancreas-kidney" />
<display value="PANCREAS KIDNEY" />
<target>
<code value="6471000179103" />
<display value="Transplantation of kidney and pancreas (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="pancreas-liver-and-kidney" />
<display value="PANCREAS LIVER AND KIDNEY" />
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="62438007" />
<display value="Transplantation of pancreas (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
<target>
<code value="70536003" />
<display value="Transplant of kidney (procedure)" />
<equivalence value="narrower" />
<comment value="When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource." />
</target>
</element>
<element>
<code value="partial-lung" />
<display value="PARTIAL LUNG" />
<target>
<code value="429332008" />
<display value="Transplantation of single lobe of lung (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="stem-cell" />
<display value="STEM CELL" />
<target>
<code value="285581000000102" />
<display value="Transplantation of stem cells (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-typeof-transplantprocedure",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-typeof-transplantprocedure",
"name": "GenomicsTypeofTransplantProcedure",
"title": "Genomics Type of Transplant Procedure",
"version": "0.0.1",
"status": "draft",
"date": "2024-08-12T17:40:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording concepts for transplantation procedure. This is intended for the element Procedure.code",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "bilateral-single-lung",
"display": "BILATERAL SINGLE LUNG",
"target": [
{
"code": "232660006",
"display": "Bilateral sequential single lung transplant (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "bone-marrow",
"display": "BONE MARROW",
"target": [
{
"code": "23719005",
"display": "Transplantation of bone marrow (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "double-kidney",
"display": "DOUBLE KIDNEY",
"target": [
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided that this transplation procedure is for double kidney. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "double-lung",
"display": "DOUBLE LUNG",
"target": [
{
"code": "232658009",
"display": "Double lung transplant (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "enbloc-kidney",
"display": "EN-BLOCKIDNEY",
"target": [
{
"equivalence": "unmatched",
"comment": "This concept should be recored by free text under Procedure.code. No suitable SNOMED CT code existed for it at this time but process are being iniated to ensure the SNOMED Team added it to the SNOMED Vocab."
}
]
},
{
"code": "heart",
"display": "HEART",
"target": [
{
"code": "32413006",
"display": "Transplantation of heart (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "heart-and-kidney",
"display": "HEART AND KIDNEY",
"target": [
{
"code": "32413006",
"display": "Transplantation of heart (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that this transplantation procedure is for a combined heart and kidney transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that this transplantation procedure is for combined heart and kidney procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "heart-and-liver",
"display": "HEART AND LIVER",
"target": [
{
"code": "32413006",
"display": "Transplantation of heart (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "heart-lung",
"display": "HEART LUNG",
"target": [
{
"code": "32477003",
"display": "Heart and lung transplant",
"equivalence": "equivalent"
}
]
},
{
"code": "heart-lung-and-kidney",
"display": "HEART LUNG AND KIDNEY",
"target": [
{
"code": "32413006",
"display": "Transplantation of heart (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "heart-lung-and-liver",
"display": "HEART LUNG AND LIVER",
"target": [
{
"code": "32413006",
"display": "Transplantation of heart (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "if-liver-bowel-pancreas",
"display": "IF LIVER BOWEL PANCREAS",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "56283009",
"display": "Transplantation of small intestine (procedure)",
"equivalence": "narrower",
"comment": "A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this combined procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource. When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "if-liver-only",
"display": "IF LIVER ONLY",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "equivalent",
"comment": "A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "if-multivisceral",
"display": "IF MULTIVISCERAL",
"target": [
{
"code": "118158008",
"display": "Gastrointestinal tract transplantation (procedure)",
"equivalence": "equivalent",
"comment": "A negative IF (Incompatible Factor) Blood test is a precondition to carrying out this procedure. The IF Blood test (250406009|Blood Incompatible(finding)) should be recorded in an observation resource.The procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "kidney",
"display": "KIDNEY",
"target": [
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "kidney-and-pancreas",
"display": "KIDNEY AND PANCREAS",
"target": [
{
"code": "6471000179103",
"display": "Transplantation of kidney and pancreas (procedure)",
"equivalence": "equivalent",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "kidney-and-pancreas-islets",
"display": "KIDNEY AND PANCREAS ISLETS",
"target": [
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "128531006",
"display": "Islet cell transplant (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "liver",
"display": "LIVER",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "liver-and-kidney",
"display": "LIVER AND KIDNEY",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "liver-and-pancreas",
"display": "LIVER AND PANCREAS",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "liver-kidney-and-pancreas",
"display": "LIVER KIDNEY AND PANCREAS",
"target": [
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "lung",
"display": "LUNG",
"target": [
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "lung-and-kidney",
"display": "LUNG AND KIDNEY",
"target": [
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "lung-and-kidney-and-liver",
"display": "LUNG AND KIDNEY AND LIVER",
"target": [
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "lung-and-liver",
"display": "LUNG AND LIVER",
"target": [
{
"code": "88039007",
"display": "Transplant of lung (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "18027006",
"display": "Transplantation of liver (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "ocular-tissue",
"display": "OCULAR TISSUE",
"target": [
{
"code": "120095006",
"display": "Eye structure transplantation (procedure)",
"equivalence": "wider"
}
]
},
{
"code": "pancreas",
"display": "PANCREAS ONLY",
"target": [
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "pancreas-and-liver",
"display": "PANCREAS AND LIVER",
"target": [
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "pancreas-islets",
"display": "PANCREAS ISLETS",
"target": [
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "128531006",
"display": "Islet cell transplant (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "pancreas-kidney",
"display": "PANCREAS KIDNEY",
"target": [
{
"code": "6471000179103",
"display": "Transplantation of kidney and pancreas (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "pancreas-liver-and-kidney",
"display": "PANCREAS LIVER AND KIDNEY",
"target": [
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "62438007",
"display": "Transplantation of pancreas (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
},
{
"code": "70536003",
"display": "Transplant of kidney (procedure)",
"equivalence": "narrower",
"comment": "When this concept is used, further notes should be provided to state that it is a combined transplant procedure. Respective procedures should be recorded in a separate Procedure resource."
}
]
},
{
"code": "partial-lung",
"display": "PARTIAL LUNG",
"target": [
{
"code": "429332008",
"display": "Transplantation of single lobe of lung (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "stem-cell",
"display": "STEM CELL",
"target": [
{
"code": "285581000000102",
"display": "Transplantation of stem cells (procedure)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Type of Transplant Procedure

ConceptMap Genomic Proband Relationship Type

Usage
ConceptMap used for the translation and recording of concept for RelatedPerson.relationship field,i.e, proband related person relationship types

HTML View

to PatientRelationshipType

Source	Equivalence	Target
biological-aunt (BIOLOGICAL AUNT)	subsumes	AUNT (aunt)
biological-brother (BIOLOGICAL BROTHER)	equivalent	NBRO (natural brother)
biological-child (BIOLOGICAL CHILD)	equivalent	NCHILD (natural child)
biological-cousin (BIOLOGICAL COUSIN)	subsumes	COUSN (cousin)
biological-daughter (BIOLOGICAL DAUGHTER)	equivalent	DAU (natural daughter)
biological-father (BIOLOGICAL FATHER)	equivalent	NFTH (natural father)
biological-grandfather (BIOLOGICAL GRANDFATHER)	subsumes	GRFTH (grandfather)
biological-grandmother (BIOLOGICAL GRANDMOTHER)	subsumes	GRMTH (grandmother)
biological-mother (BIOLOGICAL MOTHER)	equivalent	NMTH (natural mother)
biological-sister (BIOLOGICAL SISTER)	equivalent	NSIS (natural sister)
biological-son (BIOLOGICAL SON)	equivalent	SON (natural son)
biological-uncle (BIOLOGICAL UNCLE)	subsumes	UNCLE (uncle)

Table View

ConceptMap.id[0]	genomics-probandrelationshiptype
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-probandrelationshiptype
ConceptMap.version[0]	0.1.0
ConceptMap.name[0]	GenomicsProbandRelationshipType
ConceptMap.title[0]	Genomics Proband Relationship Type
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-06-28T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concept for RelatedPerson.relationship field,i.e, proband related person relationship types
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://hl7.org/fhir/ValueSet/relatedperson-relationshiptype
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://terminology.hl7.org/CodeSystem/v3-RoleCode
ConceptMap.group[0].element[0].code[0]	biological-aunt
ConceptMap.group[0].element[0].display[0]	BIOLOGICAL AUNT
ConceptMap.group[0].element[0].target[0].code[0]	AUNT
ConceptMap.group[0].element[0].target[0].display[0]	aunt
ConceptMap.group[0].element[0].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[1].code[0]	biological-brother
ConceptMap.group[0].element[1].display[0]	BIOLOGICAL BROTHER
ConceptMap.group[0].element[1].target[0].code[0]	NBRO
ConceptMap.group[0].element[1].target[0].display[0]	natural brother
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	biological-child
ConceptMap.group[0].element[2].display[0]	BIOLOGICAL CHILD
ConceptMap.group[0].element[2].target[0].code[0]	NCHILD
ConceptMap.group[0].element[2].target[0].display[0]	natural child
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	biological-cousin
ConceptMap.group[0].element[3].display[0]	BIOLOGICAL COUSIN
ConceptMap.group[0].element[3].target[0].code[0]	COUSN
ConceptMap.group[0].element[3].target[0].display[0]	cousin
ConceptMap.group[0].element[3].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[4].code[0]	biological-daughter
ConceptMap.group[0].element[4].display[0]	BIOLOGICAL DAUGHTER
ConceptMap.group[0].element[4].target[0].code[0]	DAU
ConceptMap.group[0].element[4].target[0].display[0]	natural daughter
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	biological-father
ConceptMap.group[0].element[5].display[0]	BIOLOGICAL FATHER
ConceptMap.group[0].element[5].target[0].code[0]	NFTH
ConceptMap.group[0].element[5].target[0].display[0]	natural father
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	biological-grandfather
ConceptMap.group[0].element[6].display[0]	BIOLOGICAL GRANDFATHER
ConceptMap.group[0].element[6].target[0].code[0]	GRFTH
ConceptMap.group[0].element[6].target[0].display[0]	grandfather
ConceptMap.group[0].element[6].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[7].code[0]	biological-grandmother
ConceptMap.group[0].element[7].display[0]	BIOLOGICAL GRANDMOTHER
ConceptMap.group[0].element[7].target[0].code[0]	GRMTH
ConceptMap.group[0].element[7].target[0].display[0]	grandmother
ConceptMap.group[0].element[7].target[0].equivalence[0]	subsumes
ConceptMap.group[0].element[8].code[0]	biological-mother
ConceptMap.group[0].element[8].display[0]	BIOLOGICAL MOTHER
ConceptMap.group[0].element[8].target[0].code[0]	NMTH
ConceptMap.group[0].element[8].target[0].display[0]	natural mother
ConceptMap.group[0].element[8].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[9].code[0]	biological-sister
ConceptMap.group[0].element[9].display[0]	BIOLOGICAL SISTER
ConceptMap.group[0].element[9].target[0].code[0]	NSIS
ConceptMap.group[0].element[9].target[0].display[0]	natural sister
ConceptMap.group[0].element[9].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[10].code[0]	biological-son
ConceptMap.group[0].element[10].display[0]	BIOLOGICAL SON
ConceptMap.group[0].element[10].target[0].code[0]	SON
ConceptMap.group[0].element[10].target[0].display[0]	natural son
ConceptMap.group[0].element[10].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[11].code[0]	biological-uncle
ConceptMap.group[0].element[11].display[0]	BIOLOGICAL UNCLE
ConceptMap.group[0].element[11].target[0].code[0]	UNCLE
ConceptMap.group[0].element[11].target[0].display[0]	uncle
ConceptMap.group[0].element[11].target[0].equivalence[0]	subsumes

XML View

<id value="genomics-probandrelationshiptype" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-probandrelationshiptype" />
<version value="0.1.0" />
<name value="GenomicsProbandRelationshipType" />
<title value="Genomics Proband Relationship Type" />
<status value="draft" />
<date value="2024-06-28T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concept for RelatedPerson.relationship field,i.e, proband related person relationship types" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://hl7.org/fhir/ValueSet/relatedperson-relationshiptype" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://terminology.hl7.org/CodeSystem/v3-RoleCode" />
<element>
<code value="biological-aunt" />
<display value="BIOLOGICAL AUNT" />
<target>
<code value="AUNT" />
<display value="aunt" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="biological-brother" />
<display value="BIOLOGICAL BROTHER" />
<target>
<code value="NBRO" />
<display value="natural brother" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-child" />
<display value="BIOLOGICAL CHILD" />
<target>
<code value="NCHILD" />
<display value="natural child" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-cousin" />
<display value="BIOLOGICAL COUSIN" />
<target>
<code value="COUSN" />
<display value="cousin" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="biological-daughter" />
<display value="BIOLOGICAL DAUGHTER" />
<target>
<code value="DAU" />
<display value="natural daughter" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-father" />
<display value="BIOLOGICAL FATHER" />
<target>
<code value="NFTH" />
<display value="natural father" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-grandfather" />
<display value="BIOLOGICAL GRANDFATHER" />
<target>
<code value="GRFTH" />
<display value="grandfather" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="biological-grandmother" />
<display value="BIOLOGICAL GRANDMOTHER" />
<target>
<code value="GRMTH" />
<display value="grandmother" />
<equivalence value="subsumes" />
</target>
</element>
<element>
<code value="biological-mother" />
<display value="BIOLOGICAL MOTHER" />
<target>
<code value="NMTH" />
<display value="natural mother" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-sister" />
<display value="BIOLOGICAL SISTER" />
<target>
<code value="NSIS" />
<display value="natural sister" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-son" />
<display value="BIOLOGICAL SON" />
<target>
<code value="SON" />
<display value="natural son" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="biological-uncle" />
<display value="BIOLOGICAL UNCLE" />
<target>
<code value="UNCLE" />
<display value="uncle" />
<equivalence value="subsumes" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-probandrelationshiptype",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-probandrelationshiptype",
"version": "0.1.0",
"name": "GenomicsProbandRelationshipType",
"title": "Genomics Proband Relationship Type",
"status": "draft",
"date": "2024-06-28T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concept for RelatedPerson.relationship field,i.e, proband related person relationship types",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://hl7.org/fhir/ValueSet/relatedperson-relationshiptype",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"element": [
{
"code": "biological-aunt",
"display": "BIOLOGICAL AUNT",
"target": [
{
"code": "AUNT",
"display": "aunt",
"equivalence": "subsumes"
}
]
},
{
"code": "biological-brother",
"display": "BIOLOGICAL BROTHER",
"target": [
{
"code": "NBRO",
"display": "natural brother",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-child",
"display": "BIOLOGICAL CHILD",
"target": [
{
"code": "NCHILD",
"display": "natural child",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-cousin",
"display": "BIOLOGICAL COUSIN",
"target": [
{
"code": "COUSN",
"display": "cousin",
"equivalence": "subsumes"
}
]
},
{
"code": "biological-daughter",
"display": "BIOLOGICAL DAUGHTER",
"target": [
{
"code": "DAU",
"display": "natural daughter",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-father",
"display": "BIOLOGICAL FATHER",
"target": [
{
"code": "NFTH",
"display": "natural father",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-grandfather",
"display": "BIOLOGICAL GRANDFATHER",
"target": [
{
"code": "GRFTH",
"display": "grandfather",
"equivalence": "subsumes"
}
]
},
{
"code": "biological-grandmother",
"display": "BIOLOGICAL GRANDMOTHER",
"target": [
{
"code": "GRMTH",
"display": "grandmother",
"equivalence": "subsumes"
}
]
},
{
"code": "biological-mother",
"display": "BIOLOGICAL MOTHER",
"target": [
{
"code": "NMTH",
"display": "natural mother",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-sister",
"display": "BIOLOGICAL SISTER",
"target": [
{
"code": "NSIS",
"display": "natural sister",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-son",
"display": "BIOLOGICAL SON",
"target": [
{
"code": "SON",
"display": "natural son",
"equivalence": "equivalent"
}
]
},
{
"code": "biological-uncle",
"display": "BIOLOGICAL UNCLE",
"target": [
{
"code": "UNCLE",
"display": "uncle",
"equivalence": "subsumes"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Proband Relationship Type

ConceptMap Genomic Test Request Priority

Usage
ConceptMap used for the translation and recording of Genomics test request Priority options, i.e., ServiceRequest.priority

HTML View

to RequestPriority

Source	Equivalence	Target
routine (Routine)	equivalent	routine (Routine)
urgent (Urgent)	equivalent	urgent (Urgent)

Table View

ConceptMap.id[0]	genomics-testrequestpriority
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-testrequestpriority
ConceptMap.version[0]	0.0.1
ConceptMap.name[0]	GenomicsTestRequestPriority
ConceptMap.title[0]	Genomics Test Request Priority
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-01T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of Genomics test request Priority options, i.e., ServiceRequest.priority
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://hl7.org/fhir/ValueSet/request-priority
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://hl7.org/fhir/request-priority
ConceptMap.group[0].element[0].code[0]	routine
ConceptMap.group[0].element[0].display[0]	Routine
ConceptMap.group[0].element[0].target[0].code[0]	routine
ConceptMap.group[0].element[0].target[0].display[0]	Routine
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	urgent
ConceptMap.group[0].element[1].display[0]	Urgent
ConceptMap.group[0].element[1].target[0].code[0]	urgent
ConceptMap.group[0].element[1].target[0].display[0]	Urgent
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-testrequestpriority" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-testrequestpriority" />
<version value="0.0.1" />
<name value="GenomicsTestRequestPriority" />
<title value="Genomics Test Request Priority" />
<status value="draft" />
<date value="2024-08-01T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of Genomics test request Priority options, i.e., ServiceRequest.priority" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://hl7.org/fhir/ValueSet/request-priority" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://hl7.org/fhir/request-priority" />
<element>
<code value="routine" />
<display value="Routine" />
<target>
<code value="routine" />
<display value="Routine" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="urgent" />
<display value="Urgent" />
<target>
<code value="urgent" />
<display value="Urgent" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-testrequestpriority",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-testrequestpriority",
"version": "0.0.1",
"name": "GenomicsTestRequestPriority",
"title": "Genomics Test Request Priority",
"status": "draft",
"date": "2024-08-01T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of Genomics test request Priority options, i.e., ServiceRequest.priority",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://hl7.org/fhir/ValueSet/request-priority",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://hl7.org/fhir/request-priority",
"element": [
{
"code": "routine",
"display": "Routine",
"target": [
{
"code": "routine",
"display": "Routine",
"equivalence": "equivalent"
}
]
},
{
"code": "urgent",
"display": "Urgent",
"target": [
{
"code": "urgent",
"display": "Urgent",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Test Request Priority

ConceptMap Genomic Specimen Final Sample

Usage
ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type

HTML View

Source Concept	Equivalence	Target Concept	Comment
Code [https://future.nhs.uk/NHSgenomics/view?objectId=222250117]		Code [http://snomed.info/sct]
DNA (DNA)	Equivalent	258566005 (Deoxyribonucleic acid specimen (specimen))
RNA (RNA)	Equivalent	441673008 (Ribonucleic acid specimen (specimen))
cDNA (cDNA)	Equivalent	70016006 (Complementary deoxyribonucleic acid (substance))
ctDNA (ctDNA)	Unmatched		No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA
cfDNA (cfDNA)	Equivalent	70016006 (Cell free deoxyribonucleic acid (substance))
cell-suspension (Cell Suspension)	Equivalent	702451000 (Cultured cells (substance))
fixed-tissue-on-slide (Fixed Tissue on Slide)	Narrower	787150001 (Stained slide of tissue section (specimen))	An appropriate concept should be selected to indicate either stained or unstained.
fixed-tissue-on-slide (Fixed Tissue on Slide)	Narrower	787149001 (Unstained slide of tissue section (specimen))	An appropriate concept should be selected to indicate either stained or unstained.
other (Other)	Wider	123038009 (Specimen (specimen))	Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found.

Table View

ConceptMap.id[0]	genomics-finalsample
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-finalsample
ConceptMap.version[0]	0.0.1
ConceptMap.name[0]	GenomicsFinalSample
ConceptMap.title[0]	Genomics Final Sample
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-10-01T18:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	DNA
ConceptMap.group[0].element[0].display[0]	DNA
ConceptMap.group[0].element[0].target[0].code[0]	258566005
ConceptMap.group[0].element[0].target[0].display[0]	Deoxyribonucleic acid specimen (specimen)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	RNA
ConceptMap.group[0].element[1].display[0]	RNA
ConceptMap.group[0].element[1].target[0].code[0]	441673008
ConceptMap.group[0].element[1].target[0].display[0]	Ribonucleic acid specimen (specimen)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	cDNA
ConceptMap.group[0].element[2].display[0]	cDNA
ConceptMap.group[0].element[2].target[0].code[0]	70016006
ConceptMap.group[0].element[2].target[0].display[0]	Complementary deoxyribonucleic acid (substance)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	ctDNA
ConceptMap.group[0].element[3].display[0]	ctDNA
ConceptMap.group[0].element[3].target[0].equivalence[0]	unmatched
ConceptMap.group[0].element[3].target[0].comment[0]	No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA
ConceptMap.group[0].element[4].code[0]	cfDNA
ConceptMap.group[0].element[4].display[0]	cfDNA
ConceptMap.group[0].element[4].target[0].code[0]	70016006
ConceptMap.group[0].element[4].target[0].display[0]	Cell free deoxyribonucleic acid (substance)
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	cell-suspension
ConceptMap.group[0].element[5].display[0]	Cell Suspension
ConceptMap.group[0].element[5].target[0].code[0]	702451000
ConceptMap.group[0].element[5].target[0].display[0]	Cultured cells (substance)
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	fixed-tissue-on-slide
ConceptMap.group[0].element[6].display[0]	Fixed Tissue on Slide
ConceptMap.group[0].element[6].target[0].code[0]	787150001
ConceptMap.group[0].element[6].target[0].display[0]	Stained slide of tissue section (specimen)
ConceptMap.group[0].element[6].target[0].equivalence[0]	narrower
ConceptMap.group[0].element[6].target[0].comment[0]	An appropriate concept should be selected to indicate either stained or unstained.
ConceptMap.group[0].element[6].target[1].code[0]	787149001
ConceptMap.group[0].element[6].target[1].display[0]	Unstained slide of tissue section (specimen)
ConceptMap.group[0].element[6].target[1].equivalence[0]	narrower
ConceptMap.group[0].element[6].target[1].comment[0]	An appropriate concept should be selected to indicate either stained or unstained.
ConceptMap.group[0].element[7].code[0]	other
ConceptMap.group[0].element[7].display[0]	Other
ConceptMap.group[0].element[7].target[0].code[0]	123038009
ConceptMap.group[0].element[7].target[0].display[0]	Specimen (specimen)
ConceptMap.group[0].element[7].target[0].equivalence[0]	wider
ConceptMap.group[0].element[7].target[0].comment[0]	Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found.

XML View

<id value="genomics-finalsample" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-finalsample" />
<version value="0.0.1" />
<name value="GenomicsFinalSample" />
<title value="Genomics Final Sample" />
<status value="draft" />
<date value="2024-10-01T18:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="DNA" />
<display value="DNA" />
<target>
<code value="258566005" />
<display value="Deoxyribonucleic acid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="RNA" />
<display value="RNA" />
<target>
<code value="441673008" />
<display value="Ribonucleic acid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cDNA" />
<display value="cDNA" />
<target>
<code value="70016006" />
<display value="Complementary deoxyribonucleic acid (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="ctDNA" />
<display value="ctDNA" />
<target>
<equivalence value="unmatched" />
<comment value="No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA" />
</target>
</element>
<element>
<code value="cfDNA" />
<display value="cfDNA" />
<target>
<code value="70016006" />
<display value="Cell free deoxyribonucleic acid (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cell-suspension" />
<display value="Cell Suspension" />
<target>
<code value="702451000" />
<display value="Cultured cells (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="fixed-tissue-on-slide" />
<display value="Fixed Tissue on Slide" />
<target>
<code value="787150001" />
<display value="Stained slide of tissue section (specimen)" />
<equivalence value="narrower" />
<comment value="An appropriate concept should be selected to indicate either stained or unstained." />
</target>
<target>
<code value="787149001" />
<display value="Unstained slide of tissue section (specimen)" />
<equivalence value="narrower" />
<comment value="An appropriate concept should be selected to indicate either stained or unstained." />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="123038009" />
<display value="Specimen (specimen)" />
<equivalence value="wider" />
<comment value="Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found." />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-finalsample",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-finalsample",
"version": "0.0.1",
"name": "GenomicsFinalSample",
"title": "Genomics Final Sample",
"status": "draft",
"date": "2024-10-01T18:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "DNA",
"display": "DNA",
"target": [
{
"code": "258566005",
"display": "Deoxyribonucleic acid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "RNA",
"display": "RNA",
"target": [
{
"code": "441673008",
"display": "Ribonucleic acid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "cDNA",
"display": "cDNA",
"target": [
{
"code": "70016006",
"display": "Complementary deoxyribonucleic acid (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "ctDNA",
"display": "ctDNA",
"target": [
{
"equivalence": "unmatched",
"comment": "No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA"
}
]
},
{
"code": "cfDNA",
"display": "cfDNA",
"target": [
{
"code": "70016006",
"display": "Cell free deoxyribonucleic acid (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "cell-suspension",
"display": "Cell Suspension",
"target": [
{
"code": "702451000",
"display": "Cultured cells (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "fixed-tissue-on-slide",
"display": "Fixed Tissue on Slide",
"target": [
{
"code": "787150001",
"display": "Stained slide of tissue section (specimen)",
"equivalence": "narrower",
"comment": "An appropriate concept should be selected to indicate either stained or unstained."
},
{
"code": "787149001",
"display": "Unstained slide of tissue section (specimen)",
"equivalence": "narrower",
"comment": "An appropriate concept should be selected to indicate either stained or unstained."
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "123038009",
"display": "Specimen (specimen)",
"equivalence": "wider",
"comment": "Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found."
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Specimen Final Sample

ConceptMap Genomic Specimen Primary Sample

Usage
ConceptMap used for the translation and recording of concepts for the categories of primary sample types.This is intended for the element Specimen.type

HTML View

to http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20

Source	Equivalence	Target	Comment
amniotic-fluid (Amniotic Fluid)	equivalent	119373006 (Amniotic fluid specimen (specimen))
blood (Blood)	equivalent	119297000 (Blood specimen)
bone-marrow-trephine (Bone Marrow Trephine)	equivalent	258585008 (Bone marrow trephine specimen)
bone-marrrow-aspirate (Bone Marrrow Aspirate)	equivalent	396997002 (Specimen from bone marrow obtained by aspiration)
buccals-smear (Buccals Smear)	equivalent	258564008 (Buccal smear specimen)
cerebrospinal-fluid (Cerebrospinal Fluid)	equivalent	258450006 (Cerebrospinal fluid specimen (specimen))
cord-blood (Cord Blood)	equivalent	122556008 (Cord blood specimen (specimen))
chorionic-villus-sampling (Chorionic Villus Sampling)	equivalent	258565009 (Chorionic villi specimen)
fetal-blood (Fetal Blood)	equivalent	737357006 (Fetal blood specimen)
fibroblasts (Fibroblasts)	equivalent	119333000 (Fibroblast specimen)
heart (Heart)	equivalent	127462005 (Specimen from heart (specimen))
kidney (Kidney)	equivalent	127473003 (Specimen from kidney (specimen))
liver (Liver)	equivalent	119383005 (Specimen from liver (specimen))
lymph-node (Lymph Node)	equivalent	258589002 (Lymph node specimen)
other (Other)	wider	123038009 (Specimen (specimen))	Any other suitable descendant of 123038009\|Specimen (specimen) not listed on this code. This should be provided by free text if no suitable SNOMED CT is found.
pericardial (Pericardial)	equivalent	122571007 (Pericardial fluid specimen (specimen))
peritoneal (Peritoneal)	equivalent	430250001 (Specimen from peritoneum (specimen))
pleural-fluid (Pleural Fluid)	equivalent	418564007 (Pleural fluid specimen (specimen))
products of conception (Products Of Conception)	equivalent	258428005 (Products of conception tissue specimen)
saliva (Saliva)	equivalent	119342007 (Saliva specimen (specimen))
skeletal muscle (Skeletal Muscle)	equivalent	119331003 (Skeletal muscle specimen (specimen))
skin (Skin)	equivalent	608969007 (Specimen from skin (specimen))
spleen (Spleen)	equivalent	433308004 (Specimen from spleen (specimen))
tumour (Tumour)	equivalent	258435002 (Tumor tissue specimen (specimen))
urine (Urine)	equivalent	122575003 (Urine specimen (specimen))

Table View

ConceptMap.id[0]	genomics-primarysample
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-primarysample
ConceptMap.version[0]	0.0.1
ConceptMap.name[0]	GenomicsPrimarySample
ConceptMap.title[0]	Genomics Primary Sample
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-15T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of concepts for the categories of primary sample types.This is intended for the element Specimen.type
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	amniotic-fluid
ConceptMap.group[0].element[0].display[0]	Amniotic Fluid
ConceptMap.group[0].element[0].target[0].code[0]	119373006
ConceptMap.group[0].element[0].target[0].display[0]	Amniotic fluid specimen (specimen)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	blood
ConceptMap.group[0].element[1].display[0]	Blood
ConceptMap.group[0].element[1].target[0].code[0]	119297000
ConceptMap.group[0].element[1].target[0].display[0]	Blood specimen
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	bone-marrow-trephine
ConceptMap.group[0].element[2].display[0]	Bone Marrow Trephine
ConceptMap.group[0].element[2].target[0].code[0]	258585008
ConceptMap.group[0].element[2].target[0].display[0]	Bone marrow trephine specimen
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	bone-marrrow-aspirate
ConceptMap.group[0].element[3].display[0]	Bone Marrrow Aspirate
ConceptMap.group[0].element[3].target[0].code[0]	396997002
ConceptMap.group[0].element[3].target[0].display[0]	Specimen from bone marrow obtained by aspiration
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	buccals-smear
ConceptMap.group[0].element[4].display[0]	Buccals Smear
ConceptMap.group[0].element[4].target[0].code[0]	258564008
ConceptMap.group[0].element[4].target[0].display[0]	Buccal smear specimen
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	cerebrospinal-fluid
ConceptMap.group[0].element[5].display[0]	Cerebrospinal Fluid
ConceptMap.group[0].element[5].target[0].code[0]	258450006
ConceptMap.group[0].element[5].target[0].display[0]	Cerebrospinal fluid specimen (specimen)
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	cord-blood
ConceptMap.group[0].element[6].display[0]	Cord Blood
ConceptMap.group[0].element[6].target[0].code[0]	122556008
ConceptMap.group[0].element[6].target[0].display[0]	Cord blood specimen (specimen)
ConceptMap.group[0].element[6].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[7].code[0]	chorionic-villus-sampling
ConceptMap.group[0].element[7].display[0]	Chorionic Villus Sampling
ConceptMap.group[0].element[7].target[0].code[0]	258565009
ConceptMap.group[0].element[7].target[0].display[0]	Chorionic villi specimen
ConceptMap.group[0].element[7].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[8].code[0]	fetal-blood
ConceptMap.group[0].element[8].display[0]	Fetal Blood
ConceptMap.group[0].element[8].target[0].code[0]	737357006
ConceptMap.group[0].element[8].target[0].display[0]	Fetal blood specimen
ConceptMap.group[0].element[8].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[9].code[0]	fibroblasts
ConceptMap.group[0].element[9].display[0]	Fibroblasts
ConceptMap.group[0].element[9].target[0].code[0]	119333000
ConceptMap.group[0].element[9].target[0].display[0]	Fibroblast specimen
ConceptMap.group[0].element[9].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[10].code[0]	heart
ConceptMap.group[0].element[10].display[0]	Heart
ConceptMap.group[0].element[10].target[0].code[0]	127462005
ConceptMap.group[0].element[10].target[0].display[0]	Specimen from heart (specimen)
ConceptMap.group[0].element[10].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[11].code[0]	kidney
ConceptMap.group[0].element[11].display[0]	Kidney
ConceptMap.group[0].element[11].target[0].code[0]	127473003
ConceptMap.group[0].element[11].target[0].display[0]	Specimen from kidney (specimen)
ConceptMap.group[0].element[11].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[12].code[0]	liver
ConceptMap.group[0].element[12].display[0]	Liver
ConceptMap.group[0].element[12].target[0].code[0]	119383005
ConceptMap.group[0].element[12].target[0].display[0]	Specimen from liver (specimen)
ConceptMap.group[0].element[12].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[13].code[0]	lymph-node
ConceptMap.group[0].element[13].display[0]	Lymph Node
ConceptMap.group[0].element[13].target[0].code[0]	258589002
ConceptMap.group[0].element[13].target[0].display[0]	Lymph node specimen
ConceptMap.group[0].element[13].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[14].code[0]	other
ConceptMap.group[0].element[14].display[0]	Other
ConceptMap.group[0].element[14].target[0].code[0]	123038009
ConceptMap.group[0].element[14].target[0].display[0]	Specimen (specimen)
ConceptMap.group[0].element[14].target[0].equivalence[0]	wider
ConceptMap.group[0].element[14].target[0].comment[0]	Any other suitable descendant of 123038009\|Specimen (specimen) not listed on this code. This should be provided by free text if no suitable SNOMED CT is found.
ConceptMap.group[0].element[15].code[0]	pericardial
ConceptMap.group[0].element[15].display[0]	Pericardial
ConceptMap.group[0].element[15].target[0].code[0]	122571007
ConceptMap.group[0].element[15].target[0].display[0]	Pericardial fluid specimen (specimen)
ConceptMap.group[0].element[15].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[16].code[0]	peritoneal
ConceptMap.group[0].element[16].display[0]	Peritoneal
ConceptMap.group[0].element[16].target[0].code[0]	430250001
ConceptMap.group[0].element[16].target[0].display[0]	Specimen from peritoneum (specimen)
ConceptMap.group[0].element[16].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[17].code[0]	pleural-fluid
ConceptMap.group[0].element[17].display[0]	Pleural Fluid
ConceptMap.group[0].element[17].target[0].code[0]	418564007
ConceptMap.group[0].element[17].target[0].display[0]	Pleural fluid specimen (specimen)
ConceptMap.group[0].element[17].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[18].code[0]	products of conception
ConceptMap.group[0].element[18].display[0]	Products Of Conception
ConceptMap.group[0].element[18].target[0].code[0]	258428005
ConceptMap.group[0].element[18].target[0].display[0]	Products of conception tissue specimen
ConceptMap.group[0].element[18].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[19].code[0]	saliva
ConceptMap.group[0].element[19].display[0]	Saliva
ConceptMap.group[0].element[19].target[0].code[0]	119342007
ConceptMap.group[0].element[19].target[0].display[0]	Saliva specimen (specimen)
ConceptMap.group[0].element[19].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[20].code[0]	skeletal muscle
ConceptMap.group[0].element[20].display[0]	Skeletal Muscle
ConceptMap.group[0].element[20].target[0].code[0]	119331003
ConceptMap.group[0].element[20].target[0].display[0]	Skeletal muscle specimen (specimen)
ConceptMap.group[0].element[20].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[21].code[0]	skin
ConceptMap.group[0].element[21].display[0]	Skin
ConceptMap.group[0].element[21].target[0].code[0]	608969007
ConceptMap.group[0].element[21].target[0].display[0]	Specimen from skin (specimen)
ConceptMap.group[0].element[21].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[22].code[0]	spleen
ConceptMap.group[0].element[22].display[0]	Spleen
ConceptMap.group[0].element[22].target[0].code[0]	433308004
ConceptMap.group[0].element[22].target[0].display[0]	Specimen from spleen (specimen)
ConceptMap.group[0].element[22].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[23].code[0]	tumour
ConceptMap.group[0].element[23].display[0]	Tumour
ConceptMap.group[0].element[23].target[0].code[0]	258435002
ConceptMap.group[0].element[23].target[0].display[0]	Tumor tissue specimen (specimen)
ConceptMap.group[0].element[23].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[24].code[0]	urine
ConceptMap.group[0].element[24].display[0]	Urine
ConceptMap.group[0].element[24].target[0].code[0]	122575003
ConceptMap.group[0].element[24].target[0].display[0]	Urine specimen (specimen)
ConceptMap.group[0].element[24].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-primarysample" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-primarysample" />
<version value="0.0.1" />
<name value="GenomicsPrimarySample" />
<title value="Genomics Primary Sample" />
<status value="draft" />
<date value="2024-08-15T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the categories of primary sample types.This is intended for the element Specimen.type" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="amniotic-fluid" />
<display value="Amniotic Fluid" />
<target>
<code value="119373006" />
<display value="Amniotic fluid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="blood" />
<display value="Blood" />
<target>
<code value="119297000" />
<display value="Blood specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="bone-marrow-trephine" />
<display value="Bone Marrow Trephine" />
<target>
<code value="258585008" />
<display value="Bone marrow trephine specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="bone-marrrow-aspirate" />
<display value="Bone Marrrow Aspirate" />
<target>
<code value="396997002" />
<display value="Specimen from bone marrow obtained by aspiration" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="buccals-smear" />
<display value="Buccals Smear" />
<target>
<code value="258564008" />
<display value="Buccal smear specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cerebrospinal-fluid" />
<display value="Cerebrospinal Fluid" />
<target>
<code value="258450006" />
<display value="Cerebrospinal fluid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cord-blood" />
<display value="Cord Blood" />
<target>
<code value="122556008" />
<display value="Cord blood specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="chorionic-villus-sampling" />
<display value="Chorionic Villus Sampling" />
<target>
<code value="258565009" />
<display value="Chorionic villi specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="fetal-blood" />
<display value="Fetal Blood" />
<target>
<code value="737357006" />
<display value="Fetal blood specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="fibroblasts" />
<display value="Fibroblasts" />
<target>
<code value="119333000" />
<display value="Fibroblast specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="heart" />
<display value="Heart" />
<target>
<code value="127462005" />
<display value="Specimen from heart (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="kidney" />
<display value="Kidney" />
<target>
<code value="127473003" />
<display value="Specimen from kidney (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="liver" />
<display value="Liver" />
<target>
<code value="119383005" />
<display value="Specimen from liver (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="lymph-node" />
<display value="Lymph Node" />
<target>
<code value="258589002" />
<display value="Lymph node specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="123038009" />
<display value="Specimen (specimen)" />
<equivalence value="wider" />
<comment value="Any other suitable descendant of 123038009|Specimen (specimen) not listed on this code. This should be provided by free text if no suitable SNOMED CT is found." />
</target>
</element>
<element>
<code value="pericardial" />
<display value="Pericardial" />
<target>
<code value="122571007" />
<display value="Pericardial fluid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="peritoneal" />
<display value="Peritoneal" />
<target>
<code value="430250001" />
<display value="Specimen from peritoneum (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="pleural-fluid" />
<display value="Pleural Fluid" />
<target>
<code value="418564007" />
<display value="Pleural fluid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="products of conception" />
<display value="Products Of Conception" />
<target>
<code value="258428005" />
<display value="Products of conception tissue specimen" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="saliva" />
<display value="Saliva" />
<target>
<code value="119342007" />
<display value="Saliva specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="skeletal muscle" />
<display value="Skeletal Muscle" />
<target>
<code value="119331003" />
<display value="Skeletal muscle specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="skin" />
<display value="Skin" />
<target>
<code value="608969007" />
<display value="Specimen from skin (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="spleen" />
<display value="Spleen" />
<target>
<code value="433308004" />
<display value="Specimen from spleen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="tumour" />
<display value="Tumour" />
<target>
<code value="258435002" />
<display value="Tumor tissue specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="urine" />
<display value="Urine" />
<target>
<code value="122575003" />
<display value="Urine specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-primarysample",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-primarysample",
"version": "0.0.1",
"name": "GenomicsPrimarySample",
"title": "Genomics Primary Sample",
"status": "draft",
"date": "2024-08-15T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the categories of primary sample types.This is intended for the element Specimen.type",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "amniotic-fluid",
"display": "Amniotic Fluid",
"target": [
{
"code": "119373006",
"display": "Amniotic fluid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "blood",
"display": "Blood",
"target": [
{
"code": "119297000",
"display": "Blood specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "bone-marrow-trephine",
"display": "Bone Marrow Trephine",
"target": [
{
"code": "258585008",
"display": "Bone marrow trephine specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "bone-marrrow-aspirate",
"display": "Bone Marrrow Aspirate",
"target": [
{
"code": "396997002",
"display": "Specimen from bone marrow obtained by aspiration",
"equivalence": "equivalent"
}
]
},
{
"code": "buccals-smear",
"display": "Buccals Smear",
"target": [
{
"code": "258564008",
"display": "Buccal smear specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "cerebrospinal-fluid",
"display": "Cerebrospinal Fluid",
"target": [
{
"code": "258450006",
"display": "Cerebrospinal fluid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "cord-blood",
"display": "Cord Blood",
"target": [
{
"code": "122556008",
"display": "Cord blood specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "chorionic-villus-sampling",
"display": "Chorionic Villus Sampling",
"target": [
{
"code": "258565009",
"display": "Chorionic villi specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "fetal-blood",
"display": "Fetal Blood",
"target": [
{
"code": "737357006",
"display": "Fetal blood specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "fibroblasts",
"display": "Fibroblasts",
"target": [
{
"code": "119333000",
"display": "Fibroblast specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "heart",
"display": "Heart",
"target": [
{
"code": "127462005",
"display": "Specimen from heart (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "kidney",
"display": "Kidney",
"target": [
{
"code": "127473003",
"display": "Specimen from kidney (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "liver",
"display": "Liver",
"target": [
{
"code": "119383005",
"display": "Specimen from liver (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "lymph-node",
"display": "Lymph Node",
"target": [
{
"code": "258589002",
"display": "Lymph node specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "123038009",
"display": "Specimen (specimen)",
"equivalence": "wider",
"comment": "Any other suitable descendant of 123038009|Specimen (specimen) not listed on this code. This should be provided by free text if no suitable SNOMED CT is found."
}
]
},
{
"code": "pericardial",
"display": "Pericardial",
"target": [
{
"code": "122571007",
"display": "Pericardial fluid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "peritoneal",
"display": "Peritoneal",
"target": [
{
"code": "430250001",
"display": "Specimen from peritoneum (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "pleural-fluid",
"display": "Pleural Fluid",
"target": [
{
"code": "418564007",
"display": "Pleural fluid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "products of conception",
"display": "Products Of Conception",
"target": [
{
"code": "258428005",
"display": "Products of conception tissue specimen",
"equivalence": "equivalent"
}
]
},
{
"code": "saliva",
"display": "Saliva",
"target": [
{
"code": "119342007",
"display": "Saliva specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "skeletal muscle",
"display": "Skeletal Muscle",
"target": [
{
"code": "119331003",
"display": "Skeletal muscle specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "skin",
"display": "Skin",
"target": [
{
"code": "608969007",
"display": "Specimen from skin (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "spleen",
"display": "Spleen",
"target": [
{
"code": "433308004",
"display": "Specimen from spleen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "tumour",
"display": "Tumour",
"target": [
{
"code": "258435002",
"display": "Tumor tissue specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "urine",
"display": "Urine",
"target": [
{
"code": "122575003",
"display": "Urine specimen (specimen)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic specimen Primary Sample

ConceptMap Genomic Specimen Primary Sample State

Usage
ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition

HTML View

to UKCoreSampleState

Source	Equivalence	Target	Comment
blood-spot (Blood spot)	equivalent	blood-spot (Blood spot)
FFPE (Formalin-fixed paraffin-embedded)	equivalent	FFPE (Formalin-fixed paraffin-embedded)
fresh (Fresh)	equivalent	fresh (Fresh)
other (Other)	equivalent	other (Other)	Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text.

Source	Equivalence	Target
frozen (Frozen)	equivalent	FROZ (Frozen)

Table View

ConceptMap.id[0]	genomics-primary-sample-state
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-primary-sample-state
ConceptMap.version[0]	0.0.2
ConceptMap.name[0]	GenomicsPrimarySampleState
ConceptMap.title[0]	Genomics Primary Sample State
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-12-05T00:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	https://fhir.hl7.org.uk/ValueSet/UKCore-SampleState
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState
ConceptMap.group[0].element[0].code[0]	blood-spot
ConceptMap.group[0].element[0].display[0]	Blood spot
ConceptMap.group[0].element[0].target[0].code[0]	blood-spot
ConceptMap.group[0].element[0].target[0].display[0]	Blood spot
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	FFPE
ConceptMap.group[0].element[1].display[0]	Formalin-fixed paraffin-embedded
ConceptMap.group[0].element[1].target[0].code[0]	FFPE
ConceptMap.group[0].element[1].target[0].display[0]	Formalin-fixed paraffin-embedded
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	fresh
ConceptMap.group[0].element[2].display[0]	Fresh
ConceptMap.group[0].element[2].target[0].code[0]	fresh
ConceptMap.group[0].element[2].target[0].display[0]	Fresh
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	other
ConceptMap.group[0].element[3].display[0]	Other
ConceptMap.group[0].element[3].target[0].code[0]	other
ConceptMap.group[0].element[3].target[0].display[0]	Other
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].target[0].comment[0]	Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text.
ConceptMap.group[1].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[1].target[0]	http://terminology.hl7.org/CodeSystem/v2-0493
ConceptMap.group[1].element[0].code[0]	frozen
ConceptMap.group[1].element[0].display[0]	Frozen
ConceptMap.group[1].element[0].target[0].code[0]	FROZ
ConceptMap.group[1].element[0].target[0].display[0]	Frozen
ConceptMap.group[1].element[0].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-primary-sample-state" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-primary-sample-state" />
<version value="0.0.2" />
<name value="GenomicsPrimarySampleState" />
<title value="Genomics Primary Sample State" />
<status value="draft" />
<date value="2024-12-05T00:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="https://fhir.hl7.org.uk/ValueSet/UKCore-SampleState" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
<element>
<code value="blood-spot" />
<display value="Blood spot" />
<target>
<code value="blood-spot" />
<display value="Blood spot" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="FFPE" />
<display value="Formalin-fixed paraffin-embedded" />
<target>
<code value="FFPE" />
<display value="Formalin-fixed paraffin-embedded" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="fresh" />
<display value="Fresh" />
<target>
<code value="fresh" />
<display value="Fresh" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="other" />
<display value="Other" />
<equivalence value="equivalent" />
<comment value="Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text." />
</target>
</element>
</group>
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://terminology.hl7.org/CodeSystem/v2-0493" />
<element>
<code value="frozen" />
<display value="Frozen" />
<target>
<code value="FROZ" />
<display value="Frozen" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-primary-sample-state",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-primary-sample-state",
"version": "0.0.2",
"name": "GenomicsPrimarySampleState",
"title": "Genomics Primary Sample State",
"status": "draft",
"date": "2024-12-05T00:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "https://fhir.hl7.org.uk/ValueSet/UKCore-SampleState",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
"element": [
{
"code": "blood-spot",
"display": "Blood spot",
"target": [
{
"code": "blood-spot",
"display": "Blood spot",
"equivalence": "equivalent"
}
]
},
{
"code": "FFPE",
"display": "Formalin-fixed paraffin-embedded",
"target": [
{
"code": "FFPE",
"display": "Formalin-fixed paraffin-embedded",
"equivalence": "equivalent"
}
]
},
{
"code": "fresh",
"display": "Fresh",
"target": [
{
"code": "fresh",
"display": "Fresh",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "other",
"display": "Other",
"equivalence": "equivalent",
"comment": "Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text."
}
]
}
]
},
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://terminology.hl7.org/CodeSystem/v2-0493",
"element": [
{
"code": "frozen",
"display": "Frozen",
"target": [
{
"code": "FROZ",
"display": "Frozen",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic specimen Primary Sample State

ConceptMap Genomic Sample Preparation

Usage
ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure

HTML View

to http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20

Source	Equivalence	Target	Comment
CD138+ (CD138+)	equivalent	798001000000102 (CD138 count (procedure))
CD15+ (CD15+)	equivalent	785421000000106 (CD15 count (procedure))
CD19+ (CD19+)	equivalent	408228002 (Absolute CD19 count (procedure))
CD3+ (CD3+)	equivalent	313447006 (Absolute CD3 count procedure (procedure))
CD34+ (CD34+)	equivalent	313505009 (CD34 stem cell count procedure (procedure))
CD5+ (CD5+)	equivalent	413790005 (CD5 count (procedure))
DNA (DNA)	equivalent	702943006 (DNA extraction)
microdissection (Microdissection)	equivalent	787995009 (Microdissection of tissue specimen (procedure))
other (Other)	wider	71388002 (Procedure (procedure))	Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text.
plasma (Plasma)	equivalent	407663004 (Percentage plasma cell count (procedure))
RNA (RNA)	equivalent	702944000 (RNA extraction)
white-cells (White Cells)	equivalent	302560003 (Determination of percentage differential white blood cells (procedure))

Table View

ConceptMap.id[0]	genomics-samplepreparation
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation
ConceptMap.version[0]	0.0.2
ConceptMap.name[0]	GenomicsSamplePreparation
ConceptMap.title[0]	Genomics Sample Preparation
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-10-01T15:00:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	CD138+
ConceptMap.group[0].element[0].display[0]	CD138+
ConceptMap.group[0].element[0].target[0].code[0]	798001000000102
ConceptMap.group[0].element[0].target[0].display[0]	CD138 count (procedure)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	CD15+
ConceptMap.group[0].element[1].display[0]	CD15+
ConceptMap.group[0].element[1].target[0].code[0]	785421000000106
ConceptMap.group[0].element[1].target[0].display[0]	CD15 count (procedure)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	CD19+
ConceptMap.group[0].element[2].display[0]	CD19+
ConceptMap.group[0].element[2].target[0].code[0]	408228002
ConceptMap.group[0].element[2].target[0].display[0]	Absolute CD19 count (procedure)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	CD3+
ConceptMap.group[0].element[3].display[0]	CD3+
ConceptMap.group[0].element[3].target[0].code[0]	313447006
ConceptMap.group[0].element[3].target[0].display[0]	Absolute CD3 count procedure (procedure)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	CD34+
ConceptMap.group[0].element[4].display[0]	CD34+
ConceptMap.group[0].element[4].target[0].code[0]	313505009
ConceptMap.group[0].element[4].target[0].display[0]	CD34 stem cell count procedure (procedure)
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	CD5+
ConceptMap.group[0].element[5].display[0]	CD5+
ConceptMap.group[0].element[5].target[0].code[0]	413790005
ConceptMap.group[0].element[5].target[0].display[0]	CD5 count (procedure)
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	DNA
ConceptMap.group[0].element[6].display[0]	DNA
ConceptMap.group[0].element[6].target[0].code[0]	702943006
ConceptMap.group[0].element[6].target[0].display[0]	DNA extraction
ConceptMap.group[0].element[6].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[7].code[0]	microdissection
ConceptMap.group[0].element[7].display[0]	Microdissection
ConceptMap.group[0].element[7].target[0].code[0]	787995009
ConceptMap.group[0].element[7].target[0].display[0]	Microdissection of tissue specimen (procedure)
ConceptMap.group[0].element[7].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[8].code[0]	other
ConceptMap.group[0].element[8].display[0]	Other
ConceptMap.group[0].element[8].target[0].code[0]	71388002
ConceptMap.group[0].element[8].target[0].display[0]	Procedure (procedure)
ConceptMap.group[0].element[8].target[0].equivalence[0]	wider
ConceptMap.group[0].element[8].target[0].comment[0]	Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text.
ConceptMap.group[0].element[9].code[0]	plasma
ConceptMap.group[0].element[9].display[0]	Plasma
ConceptMap.group[0].element[9].target[0].code[0]	407663004
ConceptMap.group[0].element[9].target[0].display[0]	Percentage plasma cell count (procedure)
ConceptMap.group[0].element[9].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[10].code[0]	RNA
ConceptMap.group[0].element[10].display[0]	RNA
ConceptMap.group[0].element[10].target[0].code[0]	702944000
ConceptMap.group[0].element[10].target[0].display[0]	RNA extraction
ConceptMap.group[0].element[10].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[11].code[0]	white-cells
ConceptMap.group[0].element[11].display[0]	White Cells
ConceptMap.group[0].element[11].target[0].code[0]	302560003
ConceptMap.group[0].element[11].target[0].display[0]	Determination of percentage differential white blood cells (procedure)
ConceptMap.group[0].element[11].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-samplepreparation" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation" />
<version value="0.0.2" />
<name value="GenomicsSamplePreparation" />
<title value="Genomics Sample Preparation" />
<status value="draft" />
<date value="2024-10-01T15:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="CD138+" />
<display value="CD138+" />
<target>
<code value="798001000000102" />
<display value="CD138 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD15+" />
<display value="CD15+" />
<target>
<code value="785421000000106" />
<display value="CD15 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD19+" />
<display value="CD19+" />
<target>
<code value="408228002" />
<display value="Absolute CD19 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD3+" />
<display value="CD3+" />
<target>
<code value="313447006" />
<display value="Absolute CD3 count procedure (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD34+" />
<display value="CD34+" />
<target>
<code value="313505009" />
<display value="CD34 stem cell count procedure (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD5+" />
<display value="CD5+" />
<target>
<code value="413790005" />
<display value="CD5 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="DNA" />
<display value="DNA" />
<target>
<code value="702943006" />
<display value="DNA extraction" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="microdissection" />
<display value="Microdissection" />
<target>
<code value="787995009" />
<display value="Microdissection of tissue specimen (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="71388002" />
<display value="Procedure (procedure)" />
<equivalence value="wider" />
<comment value="Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text." />
</target>
</element>
<element>
<code value="plasma" />
<display value="Plasma" />
<target>
<code value="407663004" />
<display value="Percentage plasma cell count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="RNA" />
<display value="RNA" />
<target>
<code value="702944000" />
<display value="RNA extraction" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="white-cells" />
<display value="White Cells" />
<target>
<code value="302560003" />
<display value="Determination of percentage differential white blood cells (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-samplepreparation",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation",
"version": "0.0.2",
"name": "GenomicsSamplePreparation",
"title": "Genomics Sample Preparation",
"status": "draft",
"date": "2024-10-01T15:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "CD138+",
"display": "CD138+",
"target": [
{
"code": "798001000000102",
"display": "CD138 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD15+",
"display": "CD15+",
"target": [
{
"code": "785421000000106",
"display": "CD15 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD19+",
"display": "CD19+",
"target": [
{
"code": "408228002",
"display": "Absolute CD19 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD3+",
"display": "CD3+",
"target": [
{
"code": "313447006",
"display": "Absolute CD3 count procedure (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD34+",
"display": "CD34+",
"target": [
{
"code": "313505009",
"display": "CD34 stem cell count procedure (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD5+",
"display": "CD5+",
"target": [
{
"code": "413790005",
"display": "CD5 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "DNA",
"display": "DNA",
"target": [
{
"code": "702943006",
"display": "DNA extraction",
"equivalence": "equivalent"
}
]
},
{
"code": "microdissection",
"display": "Microdissection",
"target": [
{
"code": "787995009",
"display": "Microdissection of tissue specimen (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "71388002",
"display": "Procedure (procedure)",
"equivalence": "wider",
"comment": "Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text."
}
]
},
{
"code": "plasma",
"display": "Plasma",
"target": [
{
"code": "407663004",
"display": "Percentage plasma cell count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "RNA",
"display": "RNA",
"target": [
{
"code": "702944000",
"display": "RNA extraction",
"equivalence": "equivalent"
}
]
},
{
"code": "white-cells",
"display": "White Cells",
"target": [
{
"code": "302560003",
"display": "Determination of percentage differential white blood cells (procedure)",
"equivalence": "equivalent"
}
]
}
]
}
]

}

Propose a change to ConceptMap Genomic Sample Preparation

ConceptMap Genomic Risk Reason for Specimen Special Handling

Usage
ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code

HTML View

to SNOMED_CT

Source	Equivalence	Target
anthrax (Anthrax)	equivalent	409498004 (Anthrax (disorder))
Brucellosis (Brucellosis)	equivalent	75702008 (Brucellosis (disorder))
ecoli0157 (E coli 0157)	equivalent	127531000119106 (Infection caused by Escherichia coli O157 (disorder))
haemolytic-uraemic-syndrome (Haemolytic Uraemic Syndrome)	equivalent	111407006 (Hemolytic uremic syndrome (disorder))
hiv-infection (HIV Infection)	equivalent	86406008 (Human immunodeficiency virus infection (disorder))
iv-drug-users (IV Drug Users)	equivalent	228388006 (Intravenous drug user (finding))
jakob-creutzfeldt-disease (Jakob-Creutzfeldt Disease)	equivalent	792004 (Jakob-Creutzfeldt disease (disorder))
melioidosis (Melioidosis)	equivalent	428111003 (Melioidosis (disorder))
tuberculosis (Tuberculosis)	equivalent	56717001 (Tuberculosis (disorder))
typhoid-fever (Typhoid Fever)	equivalent	4834000 (Typhoid fever (disorder))
viral-hepatitis (Viral Hepatitis)	equivalent	3738000 (Viral hepatitis (disorder))

Table View

ConceptMap.id[0]	genomics-risk-reason-for-specimen-specialhandling
ConceptMap.url[0]	https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling
ConceptMap.version[0]	0.2.0
ConceptMap.name[0]	GenomicsRiskReasonForSpecimenSpecialHandling
ConceptMap.title[0]	Genomics Risk Reason for Specimen Special Handling
ConceptMap.status[0]	draft
ConceptMap.date[0]	2024-08-09T18:45:00.000Z
ConceptMap.publisher[0]	NHS England
ConceptMap.contact[0].name[0]	NHS England
ConceptMap.contact[0].telecom[0].system[0]	email
ConceptMap.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
ConceptMap.description[0]	A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]	ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code
ConceptMap.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]	http://snomed.info/sct
ConceptMap.group[0].source[0]	https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]	http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]	anthrax
ConceptMap.group[0].element[0].display[0]	Anthrax
ConceptMap.group[0].element[0].target[0].code[0]	409498004
ConceptMap.group[0].element[0].target[0].display[0]	Anthrax (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[1].code[0]	Brucellosis
ConceptMap.group[0].element[1].display[0]	Brucellosis
ConceptMap.group[0].element[1].target[0].code[0]	75702008
ConceptMap.group[0].element[1].target[0].display[0]	Brucellosis (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[2].code[0]	ecoli0157
ConceptMap.group[0].element[2].display[0]	E coli 0157
ConceptMap.group[0].element[2].target[0].code[0]	127531000119106
ConceptMap.group[0].element[2].target[0].display[0]	Infection caused by Escherichia coli O157 (disorder)
ConceptMap.group[0].element[2].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[3].code[0]	haemolytic-uraemic-syndrome
ConceptMap.group[0].element[3].display[0]	Haemolytic Uraemic Syndrome
ConceptMap.group[0].element[3].target[0].code[0]	111407006
ConceptMap.group[0].element[3].target[0].display[0]	Hemolytic uremic syndrome (disorder)
ConceptMap.group[0].element[3].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[4].code[0]	hiv-infection
ConceptMap.group[0].element[4].display[0]	HIV Infection
ConceptMap.group[0].element[4].target[0].code[0]	86406008
ConceptMap.group[0].element[4].target[0].display[0]	Human immunodeficiency virus infection (disorder)
ConceptMap.group[0].element[4].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[5].code[0]	iv-drug-users
ConceptMap.group[0].element[5].display[0]	IV Drug Users
ConceptMap.group[0].element[5].target[0].code[0]	228388006
ConceptMap.group[0].element[5].target[0].display[0]	Intravenous drug user (finding)
ConceptMap.group[0].element[5].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[6].code[0]	jakob-creutzfeldt-disease
ConceptMap.group[0].element[6].display[0]	Jakob-Creutzfeldt Disease
ConceptMap.group[0].element[6].target[0].code[0]	792004
ConceptMap.group[0].element[6].target[0].display[0]	Jakob-Creutzfeldt disease (disorder)
ConceptMap.group[0].element[6].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[7].code[0]	melioidosis
ConceptMap.group[0].element[7].display[0]	Melioidosis
ConceptMap.group[0].element[7].target[0].code[0]	428111003
ConceptMap.group[0].element[7].target[0].display[0]	Melioidosis (disorder)
ConceptMap.group[0].element[7].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[8].code[0]	tuberculosis
ConceptMap.group[0].element[8].display[0]	Tuberculosis
ConceptMap.group[0].element[8].target[0].code[0]	56717001
ConceptMap.group[0].element[8].target[0].display[0]	Tuberculosis (disorder)
ConceptMap.group[0].element[8].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[9].code[0]	typhoid-fever
ConceptMap.group[0].element[9].display[0]	Typhoid Fever
ConceptMap.group[0].element[9].target[0].code[0]	4834000
ConceptMap.group[0].element[9].target[0].display[0]	Typhoid fever (disorder)
ConceptMap.group[0].element[9].target[0].equivalence[0]	equivalent
ConceptMap.group[0].element[10].code[0]	viral-hepatitis
ConceptMap.group[0].element[10].display[0]	Viral Hepatitis
ConceptMap.group[0].element[10].target[0].code[0]	3738000
ConceptMap.group[0].element[10].target[0].display[0]	Viral hepatitis (disorder)
ConceptMap.group[0].element[10].target[0].equivalence[0]	equivalent

XML View

<id value="genomics-risk-reason-for-specimen-specialhandling" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling" />
<version value="0.2.0" />
<name value="GenomicsRiskReasonForSpecimenSpecialHandling" />
<title value="Genomics Risk Reason for Specimen Special Handling" />
<status value="draft" />
<date value="2024-08-09T18:45:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="anthrax" />
<display value="Anthrax" />
<target>
<code value="409498004" />
<display value="Anthrax (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="Brucellosis" />
<display value="Brucellosis" />
<target>
<code value="75702008" />
<display value="Brucellosis (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="ecoli0157" />
<display value="E coli 0157" />
<target>
<code value="127531000119106" />
<display value="Infection caused by Escherichia coli O157 (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="haemolytic-uraemic-syndrome" />
<display value="Haemolytic Uraemic Syndrome" />
<target>
<code value="111407006" />
<display value="Hemolytic uremic syndrome (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="hiv-infection" />
<display value="HIV Infection" />
<target>
<code value="86406008" />
<display value="Human immunodeficiency virus infection (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="iv-drug-users" />
<display value="IV Drug Users" />
<target>
<code value="228388006" />
<display value="Intravenous drug user (finding)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="jakob-creutzfeldt-disease" />
<display value="Jakob-Creutzfeldt Disease" />
<target>
<code value="792004" />
<display value="Jakob-Creutzfeldt disease (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="melioidosis" />
<display value="Melioidosis" />
<target>
<code value="428111003" />
<display value="Melioidosis (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="tuberculosis" />
<display value="Tuberculosis" />
<target>
<code value="56717001" />
<display value="Tuberculosis (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="typhoid-fever" />
<display value="Typhoid Fever" />
<target>
<code value="4834000" />
<display value="Typhoid fever (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="viral-hepatitis" />
<display value="Viral Hepatitis" />
<target>
<code value="3738000" />
<display value="Viral hepatitis (disorder)" />
<equivalence value="equivalent" />
</target>
</element>
</group>

</ConceptMap>

JSON View

{

"resourceType": "ConceptMap",
"id": "genomics-risk-reason-for-specimen-specialhandling",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling",
"version": "0.2.0",
"name": "GenomicsRiskReasonForSpecimenSpecialHandling",
"title": "Genomics Risk Reason for Specimen Special Handling",
"status": "draft",
"date": "2024-08-09T18:45:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "anthrax",
"display": "Anthrax",
"target": [
{
"code": "409498004",
"display": "Anthrax (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "Brucellosis",
"display": "Brucellosis",
"target": [
{
"code": "75702008",
"display": "Brucellosis (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "ecoli0157",
"display": "E coli 0157",
"target": [
{
"code": "127531000119106",
"display": "Infection caused by Escherichia coli O157 (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "haemolytic-uraemic-syndrome",
"display": "Haemolytic Uraemic Syndrome",
"target": [
{
"code": "111407006",
"display": "Hemolytic uremic syndrome (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "hiv-infection",
"display": "HIV Infection",
"target": [
{
"code": "86406008",
"display": "Human immunodeficiency virus infection (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "iv-drug-users",
"display": "IV Drug Users",
"target": [
{
"code": "228388006",
"display": "Intravenous drug user (finding)",
"equivalence": "equivalent"
}
]
},
{
"code": "jakob-creutzfeldt-disease",
"display": "Jakob-Creutzfeldt Disease",
"target": [
{
"code": "792004",
"display": "Jakob-Creutzfeldt disease (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "melioidosis",
"display": "Melioidosis",
"target": [
{
"code": "428111003",
"display": "Melioidosis (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "tuberculosis",
"display": "Tuberculosis",
"target": [
{
"code": "56717001",
"display": "Tuberculosis (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "typhoid-fever",
"display": "Typhoid Fever",
"target": [
{
"code": "4834000",
"display": "Typhoid fever (disorder)",
"equivalence": "equivalent"
}
]
},
{
"code": "viral-hepatitis",
"display": "Viral Hepatitis",
"target": [
{
"code": "3738000",
"display": "Viral hepatitis (disorder)",
"equivalence": "equivalent"
}
]
}
]
}
]

}