Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
Procedure
Procedure-GenomicStudy-Example
Example of a GenomicStudy resource referencing its associated Genomics Study Analysis procedure resource.
| Procedure |
| id : Procedure-GenomicStudy-Example |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext |
| value |
| reference : Procedure/Procedure-PGXGenomicStudyAnalysis-Example |
| display : PGX Genomic Study Analysis |
| status : completed |
| category |
| coding |
| system : http://terminology.hl7.org/CodeSystem/observation-category |
| code : laboratory |
| display : Laboratory |
| subject |
| reference : Patient/Patient-PheobeSmitham-Example |
{
{
}
}
],
{
}
]
},
}
}
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
</valueReference>
</extension>
</coding>
</category>
</subject>
</Procedure>
Procedure-InVitroFertilisation-Example
Example of a procedure resource indicating method of pregnancy conception and source of Egg donor.
| Procedure |
| id : Procedure-InVitroFertilisation-Example |
| status : completed |
| code |
| coding |
| system : http://snomed.info/sct |
| code : 52637005 |
| display : In vitro fertilisation |
| subject |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307687 |
| performed : 2023-08-05 |
| note |
| text : Woman`s own egg |
{
]
},
},
]
}
</coding>
</code>
</identifier>
</subject>
</note>
</Procedure>
Procedure-PGXGenomicStudyAnalysis-Example
Example of a Genomic Study Analysis procedure resource indicating references to the devices (physical, computer hardware and softwares, e.t.c,) used in carrying out the procedure.
| Procedure |
| id : Procedure-PGXGenomicStudyAnalysis-Example |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-SampleCollectionKit-Example |
| display : DNA Sample Collection Kit (Saliva/Buccal Swab) |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-DNAExtractionSystem-Example |
| display : Automated DNA Extraction System |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-BioAnalyzerSystem-Example |
| display : Quality Control System (Bioanalyzer/Qubit) |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-Sequencerillumina-Example |
| display : Illumina NextSeq 2000 Sequencer |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-BioinformaticsPipeline-Example |
| display : Bioinformatics Analysis Pipeline v5.2 |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-VariantSnnotationTool-Example |
| display : Variant Annotation & Interpretation Software |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| url : device |
| value |
| reference : Device/Device-GenomicReportingSystem-Example |
| display : Genomic Reporting System |
| status : completed |
| category |
| coding |
| system : http://terminology.hl7.org/CodeSystem/observation-category |
| code : laboratory |
| display : Laboratory |
| subject |
| reference : Patient/Patient-PheobeSmitham-Example |
{
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device",
{
}
}
]
}
],
{
}
]
},
}
}
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</coding>
</category>
</subject>
</Procedure>
Procedure-MichaelJonesTransplant
Example of a simple procedure resource with minimal information.
| Procedure |
| id : UKCore-Procedure-MichaelJonesTransplant-Example |
| status : completed |
| code |
| coding |
| system : http://snomed.info/sct |
| code : 23719005 |
| display : Transplantation of bone marrow |
| subject |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9999999999 |
| performed : 2020-01-19 |
{
{
}
]
},
},
}
</coding>
</code>
</identifier>
</subject>
</Procedure>