Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
Task
Task-FollowupRecommendationReport-Example
Example of a Task represented a recommneded action to be taken as a consequence of a genomic test, created by a filler organization upon completion of a test, attached to a diagnostic report.
| Task |
| id : Task-FollowupRecommendationReport-Example |
| meta |
| profile : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation |
| status : requested |
| intent : proposal |
| code |
| coding |
| system : http://loinc.org |
| code : LA14021-2 |
| display : Confirmatory testing recommended |
| description : Testing of Pheobe's parents is recommended (via referral to the clinical genetics service) in order to confirm that both are heterozygous carriers of the missense variant. |
| for |
| reference : Patient/Patient-PheobeSmitham-Example |
| reasonReference |
| reference : Observation/Observation-GenomicImplication-Therapeutic |
| input |
| type |
| coding |
| system : http://terminology.hl7.org/CodeSystem/v3-RoleCode |
| code : NFTH |
| display : natural father |
| value |
| reference : Patient/Patient-PheobeSmithamFather-Example |
| input |
| type |
| coding |
| system : http://terminology.hl7.org/CodeSystem/v3-RoleCode |
| code : NMTH |
| display : natural mother |
| value |
| reference : Patient/Patient-PheobeSmithamMother-Example |
{
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation"
]
},
{
}
]
},
"description": "Testing of Pheobe's parents is recommended (via referral to the clinical genetics service) in order to confirm that both are heterozygous carriers of the missense variant.",
},
},
{
{
}
]
},
}
},
{
{
}
]
},
}
}
]
}
<profile value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation" />
</meta>
</coding>
</code>
<description value="Testing of Pheobe's parents is recommended (via referral to the clinical genetics service) in order to confirm that both are heterozygous carriers of the missense variant." />
</for>
</reasonReference>
</coding>
</type>
</valueReference>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSRareDiseaseTestOrder-Cancellation-Example
Example of a Task updated upon submission of a test cancellation request.
| Task |
| id : Task-NonWGSRareDiseaseTestOrder-Cancellation-Example |
| status : cancelled |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : task-no-longer-required |
| display : Task No Longer Required |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Cancellation-Example |
| for |
| reference : Patient/Patient-MeirLieberman-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-08-08T15:43:00Z |
| lastModified : 2023-08-08T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmithENT-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RGT01 |
| display : ADDENBROOKE'S HOSPITAL |
| note |
| text : Test no longer required. |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrder-Example
Example of a Task created upon submission of a test request. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrder-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-MeirLieberman-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-08-05 |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmithENT-Example |
{
{
}
]
},
},
}
},
}
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-Example |
| status : accepted |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : awaiting-sample |
| display : Awaiting Sample |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-MeirLieberman-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-08-05 |
| lastModified : 2023-08-08 |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmithENT-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : 69010 |
| display : Pathology Lab - ADDENBROOKE'S HOSPITAL LABORATORY |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-FetalScenario-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-FetalScenario-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : urgent |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example |
| for |
| reference : Patient/Patient-FoetusOfRyanneBoulder-Example |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : FT-RWT13521 |
| assigner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RAX |
| authoredOn : 2023-09-25T10:00:00Z |
| lastModified : 2023-10-02T09:37:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
},
}
}
},
},
},
},
]
}
</coding>
</businessStatus>
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-FetalScenario-Example" />
</focus>
</identifier>
</assigner>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-FollowupTest-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-FollowupTest-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example |
| for |
| reference : Patient/Patient-AnitaLamberts-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303649 |
| authoredOn : 2023-11-01T10:00:00Z |
| lastModified : 2023-11-02T11:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-HaemOncology-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-HaemOncology-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-HaemOncologyUpdated-Example |
| for |
| reference : Patient/Patient-PatrickSammy-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-09-04T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RR8 |
| display : LEEDS TEACHING HOSPITALS NHS TRUST |
| note |
| text : M code modified to M91.4. Appropriate testing |
{
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-Reanalysis-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-Reanlaysis-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-ReAnalysis-Example |
| for |
| reference : Patient/Patient-DemeizaSeo-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307559 |
| authoredOn : 2023-09-06T00:00:00Z |
| lastModified : 2023-09-06T11:08:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderAccepted-SufficientSample-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : sample-preparation |
| display : Sample Preparation |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example |
| for |
| reference : Patient/Patient-ZelmaHadjkiss-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307555 |
| authoredOn : 2023-09-08 |
| lastModified : 2023-09-09T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RAX01 |
| display : Kingston Hospital NHS Foundation Trust |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : ConsignmentNumber |
| display : Consignment Number |
| value |
| system : https://www.royalmail.com/track-your-item#/ |
| value : HZ970705811GB |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-CancerSolidTumor-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueIdentifier>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSRareDiseaseTestOrderCancelled-FollowupTest-Example
Example of a Task updated by a requester orgnization to indicate a test is being cancelled.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderCancelled-FollowupTest-Example |
| status : cancelled |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : task-no-longer-required |
| display : Task No Longer Required |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : interpretation |
| display : Interpretation |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FollowupTest-Example |
| for |
| reference : Patient/Patient-AnitaLamberts-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303649 |
| authoredOn : 2023-11-01T10:00:00Z |
| lastModified : 2023-11-10T11:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Follow Up Test to be requested to aid interpretation. Request a new Test with M code R65.1 |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
{
"text": "Follow Up Test to be requested to aid interpretation. Request a new Test with M code R65.1"
}
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
<text value="Follow Up Test to be requested to aid interpretation. Request a new Test with M code R65.1" />
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTesting-Example
Example of a Task updated by a filler organization upon completion of a test.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderCompleted-CascadeTesting-Example |
| status : completed |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : distribute-report |
| display : Distribute Report |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example |
| for |
| reference : Patient/Patient-FayMutlow-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307806 |
| authoredOn : 2023-10-04T11:00:00Z |
| lastModified : 2023-10-06T09:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-MarySmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RTD |
| display : THE NEWCASTLE UPON TYNE HOSPITALS NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : DiagnosticReport |
| display : DiagnosticReport |
| value |
| reference : DiagnosticReport/DiagnosticReport-FayMutlow-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example
Example of a Task updated by a filler organization upon completion of a test.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderCompleted-FollowupTest-Example |
| status : completed |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : distribute-report |
| display : Distribute Report |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-NewFollowupTest-Example |
| for |
| reference : Patient/Patient-AnitaLamberts-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303649 |
| authoredOn : 2023-11-10T10:00:00Z |
| lastModified : 2023-11-24T15:30:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-AndrewSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : DiagnosticReport |
| display : DiagnosticReport |
| value |
| reference : DiagnosticReport/DiagnosticReport-AnitaLamberts-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSRareDiseaseTestOrderForwarded-OutOfCountry-Example
Example of a Task forwarded out of country to an overseas Genomic Lab. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderForwarded-OutOfCountry-Example |
| status : in-progress |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : remote-processing-required |
| display : Remote Processing Required |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example |
| for |
| reference : Patient/Patient-KayBurbridge-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303541 |
| authoredOn : 2023-11-04T15:43:00Z |
| lastModified : 2023-11-04T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithOncology-Example |
| owner |
| display : Genomic Health- U.S.A |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
]
}
</coding>
</businessStatus>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderForwarded-SolidTumor-Example
Example of a Task forwarded to GEL. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderForwarded-SolidTumor-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : sample-preparation |
| display : Sample Preparation |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example |
| for |
| reference : Patient/Patient-ZelmaHadjkiss-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307555 |
| authoredOn : 2023-09-09 |
| lastModified : 2023-09-10T15:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Free to capture additional comments |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-CancerSolidTumor-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSRareDiseaseTestOrderRejected-Example
Example of a Task rejected by a filler orgnization. NOTE: Task codes and businessStatuses are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderRejected-Example |
| status : rejected |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : invalid-request |
| display : Invalid Request |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-MeirLieberman-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-08-05 |
| lastModified : 2023-08-08 |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmithENT-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : 69010 |
| display : Pathology Lab - ADDENBROOKE'S HOSPITAL LABORATORY |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderHold-Example
Example of a Task placed on hold by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderHold-Example |
| status : on-hold |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : no-sample-provided |
| display : no-sample-provided |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-MeirLieberman-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-08-05 |
| lastModified : 2023-08-08 |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmithENT-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : 69010 |
| display : Pathology Lab - ADDENBROOKE'S HOSPITAL LABORATORY |
| note |
| text : Please provide additional sample of X |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderRejected-CancerSolidTumor-Example
Example of a Task rejected by a filler orgnization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderRejected-CancerSolidTumor-Example |
| status : rejected |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : further-information-needed |
| display : Further Information Needed |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example |
| for |
| reference : Patient/Patient-ZelmaHadjkiss-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307555 |
| authoredOn : 2023-09-08 |
| lastModified : 2023-09-09T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RAX01 |
| display : Kingston Hospital NHS Foundation Trust |
| note |
| text : Additional information required on method of testing |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrderRejected-FetalScenario-Example
Example of a Task rejected by a filler orgnization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrderRejected-FetalScenario-Example |
| status : rejected |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : further-information-needed |
| display : Further Information Needed |
| intent : order |
| priority : urgent |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example |
| for |
| reference : Patient/Patient-FoetusOfRyanneBoulder-Example |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : FT-RWT13521 |
| assigner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RAX |
| authoredOn : 2023-09-25T10:00:00Z |
| lastModified : 2023-10-01T10:18:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-LoisLaneKingstonClinicalGenetics-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
"reference": "ServiceRequest/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example"
},
}
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" />
</focus>
</identifier>
</assigner>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSRareDiseaseTestOrder-InsufficientSample-Example
Example of a Task rejected by a filler orgnization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSRareDiseaseTestOrder-InsufficientSample-Example |
| status : rejected |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : sample-sub-optimal |
| display : Sample Sub-Optimal |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : sample-preparation |
| display : Sample Preparation |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderFormUpdated-SolidTumor-Example |
| for |
| reference : Patient/Patient-ZelmaHadjkiss-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307555 |
| authoredOn : 2023-09-08 |
| lastModified : 2023-09-09T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RAX01 |
| display : Kingston Hospital NHS Foundation Trust |
| note |
| text : Please provide additional sample of X |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : RackId |
| display : Rack Number |
| value |
| system : https://www.guysandstthomas.nhs.uk/RackId |
| value : RJ1-RAX01-9449307555 |
| assigner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-CancerSolidTumor-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
},
{
{
}
]
},
}
}
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</identifier>
</assigner>
</valueIdentifier>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-NonWGSTestOrderAccepted-VariantReinterpretation-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSTestOrderAccepted-VariantReinterpretation-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrder-VariantReinterpretation-Example |
| for |
| reference : Patient/Patient-SalimaPomfrets-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303444 |
| authoredOn : 2023-10-01T10:08:00Z |
| lastModified : 2023-10-02T11:30:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-GeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RQ3 |
| display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example |
| for |
| reference : Patient/Patient-TimMclullichs-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303452 |
| authoredOn : 2023-11-02T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-OscarShields-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RQ3 |
| display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST |
| note |
| text : Test critieria met and sample to be used from storage |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-TestOrderFormAccepted-StorageOfMaterial-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-TestOrderFormAccepted-StorageOfMaterial-Example |
| status : accepted |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-TestOrderForm-StorageOfMaterial-Example |
| for |
| reference : Patient/Patient-TimMclullichs-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303452 |
| authoredOn : 2023-10-31T08:54:00Z |
| lastModified : 2023-10-31T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-OscarShields-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RQ3 |
| display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST |
| note |
| text : sample recieved and placed to be placed in storage |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSCancerTestOrder-HaemOnc-Example
Example of a Task created upon submission of a test request.
| Task |
| id : Task-WGSCancerTestOrder-HaemOnc-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerHaemOnc-Example |
| for |
| reference : Patient/Patient-PatrickSammy-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307873 |
| authoredOn : 2023-09-28 |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
{
{
}
]
},
},
}
},
}
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</Task>
Task-WGSCancerTestOrder-SolidTumor-Example
Example of a Task created upon submission of a test request.
| Task |
| id : Task-WGSCancerTestOrder-SolidTumor-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-CancerSolidTumor-Example |
| for |
| reference : Patient/Patient-DemeizaSeo-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449306559 |
| authoredOn : 2023-09-09 |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithKingstonPathology-Example |
{
{
}
]
},
},
}
},
}
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</Task>
Task-WGSRareDiseaseTestOrder-Example
Example of a Task created upon submission of a test request.
| Task |
| id : Task-WGSRareDiseaseTestOrder-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-LindsaySorrell-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307946 |
| authoredOn : 2023-08-08 |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithRenal-Example |
{
{
}
]
},
},
}
},
}
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</Task>
Task-WGSRareDiseaseTestOrderAccepted-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-WGSRareDiseaseTestOrderAccepted-Example |
| status : on-hold |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : awaiting-rod-and-or-sample |
| display : Awaiting Record of Discussion and/or Sample |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-LindsaySorrell-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307946 |
| authoredOn : 2023-08-08 |
| lastModified : 2023-08-09 |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithRenal-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
| display : GUY'S AND ST THOMAS' NHS FOUNDATION TRUST |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
}
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</Task>
Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-WGSRareDiseaseTestOrderAccepted-DirectToLab-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : urgent |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example |
| for |
| reference : Patient/Patient-JamesMetcalfe-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 7449306524 |
| authoredOn : 2023-10-01T15:00:00Z |
| lastModified : 2023-10-10T16:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RH8 |
| display : ROYAL DEVON UNIVERSITY HEALTHCARE NHS FOUNDATION TRUST |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-JamesMetcalfeBloodEDTA-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example
Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-WGSRareDiseaseTestOrderAccepted-TrioTestingProband-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example |
| for |
| reference : Patient/Patient-PheobeSmitham-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307539 |
| authoredOn : 2023-09-15T15:00:00Z |
| lastModified : 2023-09-18T15:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : R0A |
| display : MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-PheobeSmitham-Example |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Consent |
| display : Consent |
| value |
| reference : Consent/Consent-RoD-PheobeSmitham-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example" />
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example
Example of a Task updated by a filler organization upon completion of a test.
| Task |
| id : Task-WGSRareDiseaseTestOrderCompleted-DirectToLab-Example |
| status : completed |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : distribute-report |
| display : Distribute Report |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example |
| for |
| reference : Patient/Patient-JamesMetcalfe-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 7449306524 |
| authoredOn : 2023-10-10T16:00:00Z |
| lastModified : 2023-10-18T11:10:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RH8 |
| display : ROYAL DEVON UNIVERSITY HEALTHCARE NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : DiagnosticReport |
| display : DiagnosticReport |
| value |
| reference : DiagnosticReport/DiagnosticReport-JamesMetcalfeGeneticReport-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
--
Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example
Example of a Task updated by a filler organization upon completion of a test.
| Task |
| id : Task-WGSRareDiseaseTestOrderCompleted-TrioTestingProband-Example |
| status : completed |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : distribute-report |
| display : Distribute Report |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example |
| for |
| reference : Patient/Patient-PheobeSmitham-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307539 |
| authoredOn : 2023-09-15T15:00:00Z |
| lastModified : 2023-10-16T15:50:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : R0A |
| display : MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : DiagnosticReport |
| display : DiagnosticReport |
| value |
| reference : DiagnosticReport/DiagnosticReport-PhoebeSmithGeneticReport-Example |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
}
]
}
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example" />
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSRareDiseaseTestOrderForwarded-Example
Example of a Task forwarded to GEL. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-WGSRareDiseaseTestOrderForwarded-Example |
| status : ready |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : sample-preparation |
| display : Sample Preparation |
| focus |
| reference : ServiceRequest/ServiceRequest-SavedTestOrder-Example |
| for |
| reference : Patient/Patient-LindsaySorrell-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307946 |
| authoredOn : 2023-08-08 |
| lastModified : 2023-08-10 |
| requester |
| reference : PractitionerRole/PractitionerRole-HazelSmithRenal-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : 8J834 |
| display : GENOMICS ENGLAND |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-BloodEDTA-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSRareDiseaseTestOrderHold-DirectToLab-Example
Example of a Task placed on hold by a filler organization. NOTE: Task codes and businessStatuses are pending further business
| Task |
| id : Task-WGSRareDiseaseTestOrderHold-DirectToLab-Example |
| status : on-hold |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : awaiting-rod-and-or-sample |
| display : Awaiting Record of Discussion and/or Sample |
| intent : order |
| priority : urgent |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest-WGSTestOrderForm-DirectToLab-Example |
| for |
| reference : Patient/Patient-JamesMetcalfe-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 7449306524 |
| authoredOn : 2023-10-01T15:00:00Z |
| lastModified : 2023-10-01T16:10:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RH8 |
| display : ROYAL DEVON UNIVERSITY HEALTHCARE NHS FOUNDATION TRUST |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
}
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</Task>
Task-WGSRareDiseaseTestOrderHold-TrioTestingProband-Example
Example of a Task placed on hold by a filler organization. NOTE: Task codes and businessStatuses are pending further business
| Task |
| id : Task-WGSRareDiseaseTestOrderHold-TrioTestingProband-Example |
| status : on-hold |
| statusReason |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-statusReason-genomics |
| code : awaiting-rod-and-or-sample |
| display : Awaiting Record of Discussion and/or Sample |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example |
| for |
| reference : Patient/Patient-PheobeSmitham-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307539 |
| authoredOn : 2023-09-15T15:00:00Z |
| lastModified : 2023-09-18T15:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : R0A |
| display : MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
]
}
</coding>
</statusReason>
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</Task>
Task-WGSRareDiseaseTestOrderRequested-DirectToLab-Example
Example of a Task created upon submission of a test request. NOTE: Task codes and status are pending further business analysis.
| Task |
| id : Task-WGSRareDiseaseTestOrderRequested-DirectToLab-Example |
| status : requested |
| intent : order |
| priority : urgent |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : process-genomic-test-request |
| display : Process Genomic Test Request |
| focus |
| reference : ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example |
| for |
| reference : Patient/Patient-JamesMetcalfe-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 7449306524 |
| authoredOn : 2023-10-10T11:00:00Z |
| lastModified : 2023-10-10T16:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmith-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RH8 |
| display : ROYAL DEVON UNIVERSITY HEALTHCARE NHS FOUNDATION TRUST |
{
{
}
]
},
},
}
},
},
},
}
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</Task>
Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example
Example of a Task capturing well ids for coordinating sample preparation.
| Task |
| id : Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example |
| status : requested |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : sample-preparation |
| display : Sample Preparation |
| focus |
| reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example |
| for |
| reference : Patient/Patient-TimMclullichs-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 8449303452 |
| authoredOn : 2023-11-02T15:43:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-OscarShields-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RQ3 |
| display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST |
| note |
| text : Test critieria met and sample to be used from storage |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : WellId |
| display : Well Identification Number |
| value |
| system : https://www.guysandstthomas.nhs.uk/WellId |
| value : RJ1-WID-9449307555 |
| assigner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : RJ1 |
{
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
},
{
{
}
]
},
}
}
}
]
}
</coding>
</code>
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</coding>
</type>
</identifier>
</assigner>
</valueIdentifier>
</input>
</Task>
Task-WGSRareDiseaseTestOrderAccepted-TrioTestingFather-Example
Example of a Task for sample alignment of consultand samples.
| Task |
| id : Task-WGSRareDiseaseTestOrderAccepted-TrioTestingFather-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example |
| for |
| reference : Patient-PheobeSmithamFather-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307636 |
| authoredOn : 2023-09-15T15:00:00Z |
| lastModified : 2023-09-18T15:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : R0A |
| display : MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-PheobeSmithamFather-Example |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Consent |
| display : Consent |
| value |
| reference : Consent/Consent-RoD-PheobeSmithamFather-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example" />
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>
Task-WGSRareDiseaseTestOrderAccepted-TrioTestingMother-Example
Example of a Task for sample alignment of consultand samples.
| Task |
| id : Task-WGSRareDiseaseTestOrderAccepted-TrioTestingMother-Example |
| status : accepted |
| businessStatus |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/business-status-genomics |
| code : sample-received |
| display : Sample Received |
| intent : order |
| priority : routine |
| code |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/task-code-genomics |
| code : request-sample-alignment |
| display : Request & Sample Alignment |
| focus |
| reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example |
| for |
| reference : Patient/Patient-PheobeSmithamMother-Example |
| identifier |
| system : https://fhir.nhs.uk/Id/nhs-number |
| value : 9449307246 |
| authoredOn : 2023-09-15T15:00:00Z |
| lastModified : 2023-09-18T15:00:00Z |
| requester |
| reference : PractitionerRole/PractitionerRole-EugeneSmithLeedsSTH-Example |
| owner |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : R0A |
| display : MANCHESTER UNIVERSITY NHS FOUNDATION TRUST |
| note |
| text : Optional Free Text field to record any additional details |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Specimen |
| display : Specimen |
| value |
| reference : Specimen/Specimen-PheobeSmithamMother-Example |
| input |
| type |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics |
| code : Consent |
| display : Consent |
| value |
| reference : Consent/Consent-RoD-PheobeSmithamMother-Example |
{
{
}
]
},
{
}
]
},
},
}
},
},
},
},
],
{
{
}
]
},
}
},
{
{
}
]
},
}
}
]
}
</coding>
</businessStatus>
</coding>
</code>
<reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-TrioTestingProband-Example" />
</focus>
</identifier>
</for>
</requester>
</identifier>
</owner>
</note>
</coding>
</type>
</valueReference>
</input>
</coding>
</type>
</valueReference>
</input>
</Task>