CodeSystem Genomic Sample Category

Usage

A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.

HTML View

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory defines the following codes:

LvlCodeDisplay
1tumourTumour
2  solid-tumourSolid Tumour
2  liquid-tumourLiquid Tumour
1germlineGermline
1otherOther
1not-knownNot Known

Table View

CodeSystem.id[0]UKCore-SampleCategory
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory
CodeSystem.version[0]2.0.0
CodeSystem.name[0]UKCoreSampleCategory
CodeSystem.title[0]UK Core Sample Category
CodeSystem.status[0]active
CodeSystem.date[0]2024-08-05
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A CodeSystem to record the categorisation of a specimen.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.hierarchyMeaning[0]is-a
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]tumour
CodeSystem.concept[0].display[0]Tumour
CodeSystem.concept[0].concept[0].code[0]solid-tumour
CodeSystem.concept[0].concept[0].display[0]Solid Tumour
CodeSystem.concept[0].concept[1].code[0]liquid-tumour
CodeSystem.concept[0].concept[1].display[0]Liquid Tumour
CodeSystem.concept[1].code[0]germline
CodeSystem.concept[1].display[0]Germline
CodeSystem.concept[2].code[0]other
CodeSystem.concept[2].display[0]Other
CodeSystem.concept[3].code[0]not-known
CodeSystem.concept[3].display[0]Not Known

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="UKCore-SampleCategory" />
    <url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory" />
    <version value="2.0.0" />
    <name value="UKCoreSampleCategory" />
    <title value="UK Core Sample Category" />
    <status value="active" />
    <date value="2024-08-05" />
    <publisher value="HL7 UK" />
    <contact>
        <name value="HL7 UK" />
        <telecom>
            <system value="email" />
            <value value="ukcore@hl7.org.uk" />
            <use value="work" />
            <rank value="1" />
        </telecom>
    </contact>
    <description value="A CodeSystem to record the categorisation of a specimen." />
    <copyright value="Copyright &#169; 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <hierarchyMeaning value="is-a" />
    <content value="complete" />
    <concept>
        <code value="tumour" />
        <display value="Tumour" />
        <concept>
            <code value="solid-tumour" />
            <display value="Solid Tumour" />
        </concept>
        <concept>
            <code value="liquid-tumour" />
            <display value="Liquid Tumour" />
        </concept>
    </concept>
    <concept>
        <code value="germline" />
        <display value="Germline" />
    </concept>
    <concept>
        <code value="other" />
        <display value="Other" />
    </concept>
    <concept>
        <code value="not-known" />
        <display value="Not Known" />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "UKCore-SampleCategory",
    "url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory",
    "version": "2.0.0",
    "name": "UKCoreSampleCategory",
    "title": "UK Core Sample Category",
    "status": "active",
    "date": "2024-08-05",
    "publisher": "HL7 UK",
    "contact":  [
        {
            "name": "HL7 UK",
            "telecom":  [
                {
                    "system": "email",
                    "value": "ukcore@hl7.org.uk",
                    "use": "work",
                    "rank": 1
                }
            ]
        }
    ],
    "description": "A CodeSystem to record the categorisation of a specimen.",
    "copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "hierarchyMeaning": "is-a",
    "content": "complete",
    "concept":  [
        {
            "code": "tumour",
            "display": "Tumour",
            "concept":  [
                {
                    "code": "solid-tumour",
                    "display": "Solid Tumour"
                },
                {
                    "code": "liquid-tumour",
                    "display": "Liquid Tumour"
                }
            ]
        },
        {
            "code": "germline",
            "display": "Germline"
        },
        {
            "code": "other",
            "display": "Other"
        },
        {
            "code": "not-known",
            "display": "Not Known"
        }
    ]
}