CodeSystem Genomic Primary Sample State

Usage

A CodeSystem to record the categorisation of a specimen, either sourced from a Tumour or Germline.

HTML View

This code system https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState defines the following codes:

CodeDisplayDefinition
blood-spotBlood spot
FFPEFormalin-fixed paraffin-embedded
freshFresh
frozenFrozen
otherOtherAny other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text.

Table View

CodeSystem.id[0]UKCore-PrimarySampleState
CodeSystem.url[0]https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState
CodeSystem.version[0]1.0.0
CodeSystem.name[0]UKCorePrimarySampleState
CodeSystem.title[0]UK Core Primary Sample State
CodeSystem.status[0]active
CodeSystem.date[0]2024-10-07
CodeSystem.publisher[0]HL7 UK
CodeSystem.contact[0].name[0]HL7 UK
CodeSystem.contact[0].telecom[0].system[0]email
CodeSystem.contact[0].telecom[0].value[0]ukcore@hl7.org.uk
CodeSystem.contact[0].telecom[0].use[0]work
CodeSystem.contact[0].telecom[0].rank[0]1
CodeSystem.description[0]A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets.
CodeSystem.copyright[0]Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]True
CodeSystem.content[0]complete
CodeSystem.concept[0].code[0]blood-spot
CodeSystem.concept[0].display[0]Blood spot
CodeSystem.concept[1].code[0]FFPE
CodeSystem.concept[1].display[0]Formalin-fixed paraffin-embedded
CodeSystem.concept[2].code[0]fresh
CodeSystem.concept[2].display[0]Fresh
CodeSystem.concept[3].code[0]frozen
CodeSystem.concept[3].display[0]Frozen
CodeSystem.concept[4].code[0]other
CodeSystem.concept[4].display[0]Other
CodeSystem.concept[4].definition[0]Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text.

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="UKCore-PrimarySampleState" />
    <url value="https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState" />
    <version value="1.0.0" />
    <name value="UKCorePrimarySampleState" />
    <title value="UK Core Primary Sample State" />
    <status value="active" />
    <date value="2024-10-07" />
    <publisher value="HL7 UK" />
    <contact>
        <name value="HL7 UK" />
        <telecom>
            <system value="email" />
            <value value="ukcore@hl7.org.uk" />
            <use value="work" />
            <rank value="1" />
        </telecom>
    </contact>
    <description value="A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets." />
    <copyright value="Copyright &#169; 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the &quot;License&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an &quot;AS IS&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="blood-spot" />
        <display value="Blood spot" />
    </concept>
    <concept>
        <code value="FFPE" />
        <display value="Formalin-fixed paraffin-embedded" />
    </concept>
    <concept>
        <code value="fresh" />
        <display value="Fresh" />
    </concept>
    <concept>
        <code value="frozen" />
        <display value="Frozen" />
    </concept>
    <concept>
        <code value="other" />
        <display value="Other" />
        <definition value="Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text." />
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "UKCore-PrimarySampleState",
    "url": "https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState",
    "version": "1.0.0",
    "name": "UKCorePrimarySampleState",
    "title": "UK Core Primary Sample State",
    "status": "active",
    "date": "2024-10-07",
    "publisher": "HL7 UK",
    "contact":  [
        {
            "name": "HL7 UK",
            "telecom":  [
                {
                    "system": "email",
                    "value": "ukcore@hl7.org.uk",
                    "use": "work",
                    "rank": 1
                }
            ]
        }
    ],
    "description": "A CodeSystem used to indicate the sample state/condition. The codes and their description are datasets definition from the Genomics Master Datasets.",
    "copyright": "Copyright © 2021+ HL7 UK Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "blood-spot",
            "display": "Blood spot"
        },
        {
            "code": "FFPE",
            "display": "Formalin-fixed paraffin-embedded"
        },
        {
            "code": "fresh",
            "display": "Fresh"
        },
        {
            "code": "frozen",
            "display": "Frozen"
        },
        {
            "code": "other",
            "display": "Other",
            "definition": "Any other suitable sample condition that is an alternative to concepts provided in this CodeSystem. This should be provided by free text."
        }
    ]
}