StructureDefinition SpecimenDefinition

FHIR representation for the specimen requirements for a DGTS Genomic Test. This is a definitional resource and available read-only from the DGTS FHIR API.

The below profile is provided to support parsing for clients if returned through a GET request, following the reference from an ActivityDefinition.

Profile url FHIR Module Normative Status
http://hl7.org/fhir/StructureDefinition/SpecimenDefinition HL7 International trial-use

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionC0..*Extension
modifierExtension?! C0..*Extension
identifierΣ0..1Identifier
typeCollectedΣ0..1CodeableConcept
patientPreparationΣ0..*CodeableConcept
timeAspectΣ0..1string
collectionΣ0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
isDerived0..1boolean
type0..1CodeableConcept
preference1..1codeBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
material0..1CodeableConcept
type0..1CodeableConcept
cap0..1CodeableConcept
description0..1string
capacityC0..1SimpleQuantity
minimumVolumeQuantitySimpleQuantity
minimumVolumeStringstring
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
additiveCodeableConceptCodeableConcept
additiveReferenceReference(Substance)
preparation0..1string
requirement0..1string
retentionTimeC0..1Duration
rejectionCriterion0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
temperatureQualifier0..1CodeableConcept
temperatureRangeC0..1Range
maxDurationC0..1Duration
instruction0..1string



Additional Guidance

typeCollected

SHALL be present. Represents the origin of the specimen, e.g. germline/somatic.
"typeCollected": {
		"coding": [
			{
				"code": "germline",
				"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-SampleCategory"
			}
		]
	},

typeTested

SHALL be present. Outlines the specimen type and state expected as well as whether the type os preferred or expected. Alignment of specimen types to SNOMED CT and states to the HL7 additive/preparation code lists is pending investigation.
"typeTested": [
		{
			"type": {
				"coding": [
					{
						"code": "119297000",
						"system": "http://snomed.info/sct",
						"display": "Blood specimen"
					}
				]
			},
			"preference": "preferred",
			"container": {
				"additive": [
					{
						"additiveCodeableConcept" [
							{
								"system": "http://terminology.hl7.org/CodeSystem/v2-0371",
								"code": "EDTK15",
								"display": "Potassium/K EDTA 15%"
							}
						]
					}
				]
			}
		}
	]