StructureDefinition ActivityDefinition

FHIR representation for a DGTS Genomic Test. This is a definitional resource and available read-only from the DGTS FHIR API.

The below profile is provided to support parsing for clients if returned through a GET request.

Profile url FHIR Module Normative Status
http://hl7.org/fhir/StructureDefinition/ActivityDefinition HL7 International trial-use

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionC0..*Extension
modifierExtension?! C0..*Extension
urlΣ0..1uri
identifierΣ0..*Identifier
versionΣ0..1string
nameΣ C0..1string
titleΣ0..1string
subtitle0..1string
statusΣ ?!1..1codeBinding
experimentalΣ0..1boolean
subjectCodeableConceptCodeableConcept
subjectReferenceReference(Group)
dateΣ0..1dateTime
publisherΣ0..1string
contactΣ0..*ContactDetail
descriptionΣ0..1markdown
useContextΣ0..*UsageContext
jurisdictionΣ0..*CodeableConceptBinding
purpose0..1markdown
usage0..1string
copyright0..1markdown
approvalDate0..1date
lastReviewDate0..1date
effectivePeriodΣ C0..1Period
topic0..*CodeableConcept
author0..*ContactDetail
editor0..*ContactDetail
reviewer0..*ContactDetail
endorser0..*ContactDetail
relatedArtifact0..*RelatedArtifact
library0..*canonical(Library)
kindΣ0..1codeBinding
profile0..1canonical(StructureDefinition)
codeΣ0..1CodeableConcept
intent0..1codeBinding
priority0..1codeBinding
doNotPerformΣ ?!0..1boolean
timingTimingTiming
timingDateTimedateTime
timingAgeAge
timingPeriodPeriod
timingRangeRange
timingDurationDuration
locationC0..1Reference(Location)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
type1..1codeBinding
role0..1CodeableConcept
productCodeableConceptCodeableConcept
productReferenceReference(Medication | Substance)
quantityC0..1SimpleQuantity
dosage0..*Dosage
bodySite0..*CodeableConcept
specimenRequirementC0..*Reference(SpecimenDefinition)
observationRequirementC0..*Reference(ObservationDefinition)
observationResultRequirementC0..*Reference(ObservationDefinition)
transform0..1canonical(StructureMap)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
path1..1string
expressionC1..1Expression



Additional Guidance

identifier

SHALL be present. The DGTS test readable ID assigned to the test.
"identifier": [
		{
			"system": "http://fhir.nhs.uk/Id/Genomics-DGTS",
			"value": "GT1"
		}
	],

title

SHALL be present. The DGTS test name.
"title": "15q11 critical region (AS/PWS) - MLPA or equivalent",

status

SHALL be present. Used to represent the state of a test. Mapping of statuses which do not match the required HL7 ValueSet, e.g. "Deprecated", are pending investigation.
"status": "active",

experimental

SHALL be present. For representing whether a test/test package is in pre-release.
"experimental": false,

version

SHALL be present. The DGTS Test version.
"version": "1.0",

useContext

SHALL be present. Used for capturing the requesting reasons which are eligible for this test/test package
"useContext": [
		{
			"code": {
				"code": "focus",
				"system": "http://terminology.hl7.org/CodeSystem/usage-context-type"
			},
			"valueCodeableConcept": {
				"coding": [
					{
						"code": "diagnostic",
						"system": "https://fhir.nhs.uk/CodeSystem/reasonfortesting-genomics"
					}
				]
			}
		}
    ],

code

SHALL be present. Used to represent the Test Method. Alignment with the HL7 method type list is under investigation.
"code": {
		"coding": [
			{
				"code": "targeted-variant-analysis",
				"system": "http://hl7.org/fhir/genomicstudy-methodtype"
			}
		]
	},

library

SHALL be present. A link to the data requirements for ordering this test.
	"library": [
		"http://fhir.nhs.uk/Library/GT1"
	],

specimenRequirement

MAY be present. A reference to the specimen(s) expected for this test.
"specimenRequirement": [
		{
			"reference": "SpecimenDefinition/DGTS-SpecimenDefinition-Example"
		}
	],

relatedArtifact

MAY be present. Links to the GEL panels which could be included as part of this test (if marked as a GMS Rare Disease Virtual, can be added to the order as an additional panel).
"relatedArtifact": [
		{
			"type": "composed-of",
			"url": "https://panelapp.genomicsengland.co.uk/panels/1313",
			"label": "Carney complex",
			"display": "GMS Rare Disease"
		}
	]