XML View
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="genomics-samplepreparation" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation" />
<version value="0.0.2" />
<name value="GenomicsSamplePreparation" />
<title value="Genomics Sample Preparation" />
<status value="draft" />
<date value="2024-10-01T15:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<targetUri value="http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20" />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="CD138+" />
<display value="CD138+" />
<target>
<code value="798001000000102" />
<display value="CD138 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD15+" />
<display value="CD15+" />
<target>
<code value="785421000000106" />
<display value="CD15 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD19+" />
<display value="CD19+" />
<target>
<code value="408228002" />
<display value="Absolute CD19 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD3+" />
<display value="CD3+" />
<target>
<code value="313447006" />
<display value="Absolute CD3 count procedure (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD34+" />
<display value="CD34+" />
<target>
<code value="313505009" />
<display value="CD34 stem cell count procedure (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="CD5+" />
<display value="CD5+" />
<target>
<code value="413790005" />
<display value="CD5 count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="DNA" />
<display value="DNA" />
<target>
<code value="702943006" />
<display value="DNA extraction" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="microdissection" />
<display value="Microdissection" />
<target>
<code value="787995009" />
<display value="Microdissection of tissue specimen (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="71388002" />
<display value="Procedure (procedure)" />
<equivalence value="wider" />
<comment value="Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text." />
</target>
</element>
<element>
<code value="plasma" />
<display value="Plasma" />
<target>
<code value="407663004" />
<display value="Percentage plasma cell count (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="RNA" />
<display value="RNA" />
<target>
<code value="702944000" />
<display value="RNA extraction" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="white-cells" />
<display value="White Cells" />
<target>
<code value="302560003" />
<display value="Determination of percentage differential white blood cells (procedure)" />
<equivalence value="equivalent" />
</target>
</element>
</group>
</ConceptMap>
JSON View
{
"resourceType": "ConceptMap",
"id": "genomics-samplepreparation",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-samplepreparation",
"version": "0.0.2",
"name": "GenomicsSamplePreparation",
"title": "Genomics Sample Preparation",
"status": "draft",
"date": "2024-10-01T15:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording the concepts on method of sample preparation. This is intended for the element Specimen.processing.procedure",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%2071388002%20",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "CD138+",
"display": "CD138+",
"target": [
{
"code": "798001000000102",
"display": "CD138 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD15+",
"display": "CD15+",
"target": [
{
"code": "785421000000106",
"display": "CD15 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD19+",
"display": "CD19+",
"target": [
{
"code": "408228002",
"display": "Absolute CD19 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD3+",
"display": "CD3+",
"target": [
{
"code": "313447006",
"display": "Absolute CD3 count procedure (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD34+",
"display": "CD34+",
"target": [
{
"code": "313505009",
"display": "CD34 stem cell count procedure (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "CD5+",
"display": "CD5+",
"target": [
{
"code": "413790005",
"display": "CD5 count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "DNA",
"display": "DNA",
"target": [
{
"code": "702943006",
"display": "DNA extraction",
"equivalence": "equivalent"
}
]
},
{
"code": "microdissection",
"display": "Microdissection",
"target": [
{
"code": "787995009",
"display": "Microdissection of tissue specimen (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "71388002",
"display": "Procedure (procedure)",
"equivalence": "wider",
"comment": "Any other suitable procedure that is an alternative to the concepts provided in this code. This should be provided by free text."
}
]
},
{
"code": "plasma",
"display": "Plasma",
"target": [
{
"code": "407663004",
"display": "Percentage plasma cell count (procedure)",
"equivalence": "equivalent"
}
]
},
{
"code": "RNA",
"display": "RNA",
"target": [
{
"code": "702944000",
"display": "RNA extraction",
"equivalence": "equivalent"
}
]
},
{
"code": "white-cells",
"display": "White Cells",
"target": [
{
"code": "302560003",
"display": "Determination of percentage differential white blood cells (procedure)",
"equivalence": "equivalent"
}
]
}
]
}
]
}
