Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
CommunityCloud-GenomicStudyAnalysis-Example
Example of a GenomicStudy resource capturing details required for the Community Cloud Project.
| Procedure |
| id : 9bc12bd5-8e06-4f10-949e-512bb623552e |
| meta |
| profile : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen |
| value |
| reference : Specimen/b6c3ebd7-53e4-450b-b46f-0e9f83d995e6 |
| extension |
| extension |
| url : device |
| value |
| reference : Device/44ae1fac-d147-43fb-87ba-35f6bc056f51 |
| extension |
| url : function |
| value |
| text : Sequencing platform |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : device |
| value |
| reference : Device/1e73bfaf-b851-463f-98df-c2b6582a948e |
| extension |
| url : function |
| value |
| text : Bioinformatics Pipeline |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : device |
| value |
| reference : Device/04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc |
| extension |
| url : function |
| value |
| text : Bioinformatics Variant Caller |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : type |
| value |
| coding |
| system : http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs |
| code : vcf |
| display : VCF |
| extension |
| url : file |
| value |
| reference : DocumentReference/1e6aef26-d201-43d1-b54c-087cd4ee5c24 |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output |
| status : completed |
| category |
| coding |
| system : http://terminology.hl7.org/CodeSystem/observation-category |
| code : laboratory |
| subject |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : SomePatientIdentifier |
| performed : 2025-11-25T17:49:00Z |
{
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen",
}
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
{
}
]
}
},
{
}
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
}
],
]
},
}
},
}
<profile value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis" />
</meta>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen">
</valueReference>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output">
<system value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs" />
</coding>
</valueCodeableConcept>
</extension>
</valueReference>
</extension>
</extension>
</coding>
</category>
</identifier>
</subject>
</Procedure>