CommunityCloud-VCFDocumentReference-Example

Example of a DocumentReference depicting a reference to a genomic data file containing the minimal information required for the Community Cloud Project.

DocumentReference
{
"resourceType": "DocumentReference",
"id": "1e6aef26-d201-43d1-b54c-087cd4ee5c24",
"meta": {
"profile": [
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"
]
},
"status": "current",
"subject": {
"system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
"value": "SomePatientIdentifier"
}
},
"author": [
{
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "699M0"
},
"display": "NHS EAST GENOMIC LABORATORY HUB"
}
],
"content": [
{
"contentType": "application/gzip",
"url": "https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz",
"title": "140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz"
}
}
]
}
<DocumentReference xmlns="http://hl7.org/fhir">
<id value="1e6aef26-d201-43d1-b54c-087cd4ee5c24" />
<profile value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file" />
</meta>
<status value="current" />
<system value="urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24" />
<value value="SomePatientIdentifier" />
</identifier>
</subject>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="699M0" />
</identifier>
<display value="NHS EAST GENOMIC LABORATORY HUB" />
</author>
<contentType value="application/gzip" />
<url value="https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz" />
<title value="140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz" />
</attachment>
</content>
</DocumentReference>