Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
CommunityCloud-Bundle-Example
Example of a complete bundle covering the metadata required for the Community Cloud project, see Community Cloud Integration
| Bundle |
| type : transaction |
| entry |
| fullUrl : urn:uuid:1e6aef26-d201-43d1-b54c-087cd4ee5c24 |
| resource |
| id : 1e6aef26-d201-43d1-b54c-087cd4ee5c24 |
| meta |
| profile : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file |
| status : current |
| subject |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : SomePatientIdentifier |
| author |
| identifier |
| system : https://fhir.nhs.uk/Id/ods-organization-code |
| value : 699M0 |
| display : NHS EAST GENOMIC LABORATORY HUB |
| content |
| attachment |
| contentType : application/gzip |
| url : https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz |
| title : 140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz |
| request |
| method : POST |
| url : DocumentReference |
| entry |
| fullUrl : urn:uuid:b6c3ebd7-53e4-450b-b46f-0e9f83d995e6 |
| resource |
| id : b6c3ebd7-53e4-450b-b46f-0e9f83d995e6 |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.19 |
| value : 140103896-25301R0078 |
| type |
| coding |
| system : http://snomed.info/sct |
| code : 24851008 |
| display : Deoxyribonucleic acid |
| request |
| method : POST |
| url : Specimen |
| entry |
| fullUrl : urn:uuid:04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc |
| resource |
| id : 04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc |
| deviceName |
| name : Sentieon Haplotyper |
| type : user-friendly-name |
| version |
| value : 202308.03 |
| request |
| method : POST |
| url : Device |
| entry |
| fullUrl : urn:uuid:1e73bfaf-b851-463f-98df-c2b6582a948e |
| resource |
| id : 1e73bfaf-b851-463f-98df-c2b6582a948e |
| deviceName |
| name : Dias |
| type : user-friendly-name |
| version |
| value : eggd_conductor_dias_CEN_config_v2.5.2 |
| request |
| method : POST |
| url : Device |
| entry |
| fullUrl : urn:uuid:44ae1fac-d147-43fb-87ba-35f6bc056f51 |
| resource |
| id : 44ae1fac-d147-43fb-87ba-35f6bc056f51 |
| manufacturer : Illumina |
| deviceName |
| name : Novaseq 6000 |
| type : user-friendly-name |
| property |
| type |
| text : Sequencing assay name |
| valueCode |
| text : CEN |
| request |
| method : POST |
| url : Device |
| entry |
| fullUrl : urn:uuid:9bc12bd5-8e06-4f10-949e-512bb623552e |
| resource |
| id : 9bc12bd5-8e06-4f10-949e-512bb623552e |
| meta |
| profile : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen |
| value |
| reference : urn:uuid:b6c3ebd7-53e4-450b-b46f-0e9f83d995e6 |
| extension |
| extension |
| url : device |
| value |
| reference : urn:uuid:44ae1fac-d147-43fb-87ba-35f6bc056f51 |
| extension |
| url : function |
| value |
| text : Sequencing platform |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : device |
| value |
| reference : urn:uuid:1e73bfaf-b851-463f-98df-c2b6582a948e |
| extension |
| url : function |
| value |
| text : Bioinformatics Pipeline |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : device |
| value |
| reference : urn:uuid:04a7b32d-2270-4e4e-a1bb-80f0eaa0c4cc |
| extension |
| url : function |
| value |
| text : Bioinformatics Variant Caller |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device |
| extension |
| extension |
| url : type |
| value |
| coding |
| system : http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs |
| code : vcf |
| display : VCF |
| extension |
| url : file |
| value |
| reference : urn:uuid:1e6aef26-d201-43d1-b54c-087cd4ee5c24 |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output |
| status : completed |
| category |
| coding |
| system : http://terminology.hl7.org/CodeSystem/observation-category |
| code : laboratory |
| subject |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : SomePatientIdentifier |
| performed : 2025-11-25T17:49:00Z |
| request |
| method : POST |
| url : Procedure |
| entry |
| fullUrl : urn:uuid:fc708a88-9a59-4efd-9ff7-c028cf2b9491 |
| resource |
| id : fc708a88-9a59-4efd-9ff7-c028cf2b9491 |
| meta |
| profile : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study |
| extension |
| url : http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext |
| value |
| reference : urn:uuid:9bc12bd5-8e06-4f10-949e-512bb623552e |
| status : completed |
| category |
| coding |
| system : http://terminology.hl7.org/CodeSystem/observation-category |
| code : laboratory |
| code |
| text : Small |
| subject |
| identifier |
| system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
| value : SomePatientIdentifier |
| performed : 2025-11-25T17:49:00Z |
| reasonCode |
| coding |
| system : https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory |
| code : R134 |
| display : Familial Hypercholesterolaemia |
| note |
| text : Rare Disease |
| request |
| method : POST |
| url : Procedure |
{
{
},
}
},
{
},
}
],
{
"url": "https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz",
}
}
]
},
}
},
{
],
]
}
},
}
},
{
],
]
},
}
},
{
],
]
},
}
},
{
],
]
},
}
},
{
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"
]
},
{
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen",
}
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device"
},
{
{
{
}
]
}
},
{
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output"
}
],
]
},
}
},
},
}
},
{
},
{
}
}
],
]
},
},
}
},
{
{
}
]
}
],
]
},
}
}
]
}
<DocumentReference>
</meta>
</identifier>
</subject>
</identifier>
</author>
<url value="https://002-cen.s3.eu-west-2.amazonaws.com/grch38/haplotyper_normalised_v0.3/140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz" />
<title value="140103896-25301R0078-25NGCEN64-9527-F-99347387_markdup_recalibrated_Haplotyper.vcf.gz" />
</attachment>
</content>
</DocumentReference>
</resource>
</request>
</entry>
<Specimen>
</identifier>
</coding>
</type>
</Specimen>
</resource>
</request>
</entry>
<Device>
</deviceName>
</version>
</Device>
</resource>
</request>
</entry>
<Device>
</deviceName>
</version>
</Device>
</resource>
</request>
</entry>
<Device>
</deviceName>
</property>
</Device>
</resource>
</request>
</entry>
<Procedure>
<profile value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis" />
</meta>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-specimen">
</valueReference>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-device">
</valueReference>
</extension>
</extension>
</extension>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-output">
<system value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs" />
</coding>
</valueCodeableConcept>
</extension>
</valueReference>
</extension>
</extension>
</coding>
</category>
</identifier>
</subject>
</Procedure>
</resource>
</request>
</entry>
<Procedure>
</meta>
<extension url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
</valueReference>
</extension>
</coding>
</category>
</code>
</identifier>
</subject>
</coding>
</reasonCode>
</note>
</Procedure>
</resource>
</request>
</entry>
</Bundle>