FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example

Example of a Task accepted by a filler organization. NOTE: Task codes and status are pending further business analysis.

Task

id : Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example

status : accepted

intent : order

priority : routine

code

coding

system : https://fhir.nhs.uk/CodeSystem/task-code-genomics

code : ProcessGenomicTestRequest

display : Process Genomic Test Request

focus

reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example

for

reference : Patient/Patient-TimMclullichs-Example

identifier

system : https://fhir.nhs.uk/Id/nhs-number

value : 8449303452

authoredOn : 2023-11-02T15:43:00Z

requester

reference : PractitionerRole/PractitionerRole-OscarShields-Example

owner

identifier

system : https://fhir.nhs.uk/Id/ods-organization-code

value : RQ3

display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST

note

text : Test critieria met and sample to be used from storage

output

type

coding

system : http://snomed.info/sct

code : 445295009

display : Blood specimen with EDTA

value

reference : Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example

{
    "resourceType": "Task",
    "id": "Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example",
    "status": "accepted",
    "intent": "order",
    "priority": "routine",
    "code": {
        "coding":  [
            {
                "system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
                "code": "ProcessGenomicTestRequest",
                "display": "Process Genomic Test Request"
            }
        ]
    },
    "focus": {
        "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example"
    },
    "for": {
        "reference": "Patient/Patient-TimMclullichs-Example",
        "identifier": {
            "system": "https://fhir.nhs.uk/Id/nhs-number",
            "value": "8449303452"
        }
    },
    "authoredOn": "2023-11-02T15:43:00Z",
    "requester": {
        "reference": "PractitionerRole/PractitionerRole-OscarShields-Example"
    },
    "owner": {
        "identifier": {
            "system": "https://fhir.nhs.uk/Id/ods-organization-code",
            "value": "RQ3"
        },
        "display": "BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST"
    },
    "note":  [
        {
            "text": "Test critieria met and sample to be used from storage"
        }
    ],
    "output":  [
        {
            "type": {
                "coding":  [
                    {
                        "system": "http://snomed.info/sct",
                        "code": "445295009",
                        "display": "Blood specimen with EDTA"
                    }
                ]
            },
            "valueReference": {
                "reference": "Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example"
            }
        }
    ]
}

<Task xmlns="http://hl7.org/fhir">
    <id value="Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example" />
    <status value="accepted" />
    <intent value="order" />
    <priority value="routine" />
    <code>
        <coding>
            <system value="https://fhir.nhs.uk/CodeSystem/task-code-genomics" />
            <code value="ProcessGenomicTestRequest" />
            <display value="Process Genomic Test Request" />
        </coding>
    </code>
    <focus>
        <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example" />
    </focus>
    <for>
        <reference value="Patient/Patient-TimMclullichs-Example" />
        <identifier>
            <system value="https://fhir.nhs.uk/Id/nhs-number" />
            <value value="8449303452" />
        </identifier>
    </for>
    <authoredOn value="2023-11-02T15:43:00Z" />
    <requester>
        <reference value="PractitionerRole/PractitionerRole-OscarShields-Example" />
    </requester>
    <owner>
        <identifier>
            <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
            <value value="RQ3" />
        </identifier>
        <display value="BIRMINGHAM WOMEN&#39;S AND CHILDREN&#39;S NHS FOUNDATION TRUST" />
    </owner>
    <note>
        <text value="Test critieria met and sample to be used from storage" />
    </note>
    <output>
        <type>
            <coding>
                <system value="http://snomed.info/sct" />
                <code value="445295009" />
                <display value="Blood specimen with EDTA" />
            </coding>
        </type>
        <valueReference>
            <reference value="Specimen/Specimen-BloodEDTA-WithCollectoinDetails-Example" />
        </valueReference>
    </output>
</Task>

Notice

Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example

Propose a change to Task-NonWGSTestOrderFormAccepted-UsingStoredSample-Example