Sample


NameTypeLinkVersionNumberVersionDateStatus
SpecimenSpecimenhttps://demis.rki.de/fhir/ars/StructureDefinition/Specimen1.0.02025-06-13active

This page provides information about the sample.


Profile

idS Σ1..1string
id0..0string
extensionC0..0Extension
versionIdΣ0..0id
lastUpdatedΣ0..0instant
sourceΣ0..0uri
arsProfileS Σ1..1canonical(StructureDefinition)Pattern
securityΣ0..0CodingBinding
tagΣ0..0Coding
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
extensionC0..*Extension
modifierExtension?! C0..*Extension
identifierΣ0..0Identifier
id0..1string
extensionC0..*Extension
useΣ ?!0..0codeBinding
typeΣ0..0CodeableConceptBinding
systemS Σ1..1uri
valueS Σ1..1string
periodΣ0..0Period
assignerΣ0..0Reference(Organization)
statusΣ ?!0..0codeBinding
id0..1string
extensionC0..*Extension
id0..1string
extensionC0..*Extension
systemS Σ1..1uri
versionS Σ1..1string
codeS Σ1..1code
displayΣ0..1string
userSelectedΣ0..1boolean
textS Σ0..1string
id0..1string
extensionC0..*Extension
referenceS Σ C1..1string
typeΣ0..0uriBinding
identifierΣ0..0Identifier
displayΣ0..0string
receivedTimeS Σ1..1dateTime
parent0..0Reference(Specimen)
id0..1string
extensionC0..*Extension
referenceS Σ C1..1string
typeΣ0..0uriBinding
identifierΣ0..0Identifier
displayΣ0..0string
id0..1string
id0..0string
extensionC0..0Extension
urlS1..1uriAuto Value
id0..1string
extensionC0..*Extension
referenceS Σ C1..1string
typeΣ0..0uriBinding
identifierΣ0..0Identifier
displayΣ0..0string
modifierExtensionΣ ?! C0..*Extension
id0..1string
extensionC0..*Extension
referenceS Σ C1..1string
typeΣ0..0uriBinding
identifierΣ0..0Identifier
displayΣ0..0string
collectedDateTimeS Σ0..1dateTime
id0..1string
extensionC0..*Extension
startS Σ C1..1dateTime
endS Σ C1..1dateTime
durationΣ0..0Duration
quantity0..0SimpleQuantity
method0..0CodeableConcept
id0..1string
extensionC0..*Extension
id0..1string
extensionC0..*Extension
systemS Σ1..1uri
versionS Σ1..1string
codeS Σ1..1code
displayΣ0..1string
userSelectedΣ0..1boolean
textS Σ0..1string
conditionΣ0..0CodeableConceptBinding
note0..0Annotation



Specimen.accessionIdentifier (Specimen number)

  • Original sample number from the laboratory. This is the only identifier that is retained unchanged from the laboratory. It is used for communication with the laboratory for data quality management purposes.

Specimen.type (Specimen material)

  • The sample arriving at the laboratory is described using a SNOMED code. See also the Semantics chapter. The "bodySite" in Specimen.collection can be used to further specify the sample's collection location.

Specimen.type.text (Original name)

  • Original name from the laboratory information system (LIS) or from the sending system. This information is used for data quality management.

Specimen.receivedTime (Date specimen was received)

  • Date that specimen was received by the lab

Specimen.collection.extension:bodySite (Body collection site of specimen)

  • In addition to the sample material in Specimen.type, the sample can be further specified with regard to its collection location. See also the Semantics chapter.
  • For ARS, the body site can be described using the BodyStructure resource referenced here, or alternatively using Specimen.collection.bodySite. The ValueSet bound there contains all SNOMED codes that can also be specified in BodyStructure.morphology or BodyStructrue.location. Data senders can decide for themselves which option to use.

Specimen.collection.bodySite (Body collection site of specimen)

  • In addition to the sample material in Specimen.type, the sample can be further specified with regard to the collection location. See also the Semantics chapter.
  • For ARS, the body site can be described using this element, or alternatively as a BodyStructure resource, which is referenced via Specimen.collection.extension:bodySite. The ValueSet bound here contains all SNOMED codes that can also be specified in BodyStructure.morphology or BodyStructrue.location. Data senders can decide which option to use.

Specimen.collection.bodySite.text (Original name)

  • Original name from the laboratory information system (LIS) or from the sending system. This information is used for data quality management.




Constraints

none




Bindings

pathstrengthvalueSet
Specimen.type.codingextensiblehttps://demis.rki.de/fhir/ars/ValueSet/materialSNOMED
Specimen.collection.bodySite.codingextensiblehttps://demis.rki.de/fhir/ars/ValueSet/abnahmeortSNOMED




Example

Specimen
<Specimen xmlns="http://hl7.org/fhir">
<id value="3a2f563f-a155-498f-a5b2-a2959e2380a1" />
<profile value="https://demis.rki.de/fhir/ars/StructureDefinition/Specimen" />
</meta>
<system value="http://www.beispiellabor.de/identifiers/specimen/accessionIdentifier" />
<value value="23BLN001234" />
</accessionIdentifier>
<system value="http://snomed.info/sct" />
<version value="http://snomed.info/sct/11000274103/version/20250515" />
<code value="866033003" />
</coding>
<text value="Blutkulturflasche aerob" />
</type>
<reference value="Patient/43511fe3-aa5f-73fb-7e59-2313ba0ca76c" />
</subject>
<receivedTime value="2023-06-13" />
<reference value="ServiceRequest/CC06EA66-2DCF-49F5-A4C8-E363936D03E1" />
</request>
<reference value="PractitionerRole/59bc88f9-8ef8-4a04-8c19-5e2c5065e9eb" />
</collector>
<collectedDateTime value="2023-06-10" />
<system value="http://snomed.info/sct" />
<version value="http://snomed.info/sct/11000274103/version/20250515" />
<code value="52124006" />
</coding>
<text value="Blutstrom" />
</bodySite>
</collection>
</Specimen>
{
"resourceType": "Specimen",
"id": "3a2f563f-a155-498f-a5b2-a2959e2380a1",
"meta": {
"profile": [
"https://demis.rki.de/fhir/ars/StructureDefinition/Specimen"
]
},
"system": "http://www.beispiellabor.de/identifiers/specimen/accessionIdentifier",
"value": "23BLN001234"
},
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "866033003",
"version": "http://snomed.info/sct/11000274103/version/20250515"
}
],
"text": "Blutkulturflasche aerob"
},
"subject": {
"reference": "Patient/43511fe3-aa5f-73fb-7e59-2313ba0ca76c"
},
"receivedTime": "2023-06-13",
"request": [
{
"reference": "ServiceRequest/CC06EA66-2DCF-49F5-A4C8-E363936D03E1"
}
],
"reference": "PractitionerRole/59bc88f9-8ef8-4a04-8c19-5e2c5065e9eb"
},
"collectedDateTime": "2023-06-10",
"coding": [
{
"system": "http://snomed.info/sct",
"code": "52124006",
"version": "http://snomed.info/sct/11000274103/version/20250515"
}
],
"text": "Blutstrom"
}
}
}