BodyOrganAnalyzer (BOA)

Executive summary

BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

Resource Overview

Resource Name FHIR Resource Type Link to profile Link to example
Algorithm Device Link Link
Service HealthcareService Link Link
Endpoint Endpoint Link Link
Input Parameters Parameters Link Link
Output Parameters Parameters Link Link
Output Observation Observation Link Link
Output Composition Composition Link Link

References

Description

Description

BOA takes in a high-resolution CT scan of the human body, provided in a standard medical imaging format (e.g., DICOM). It outputs several things:

  • segmented Images highlighting different organs and structures.
  • a pdf report containing analysis results, organ measurements, and relevant observations in table form.
  • a FHIR Report (Composition): A machine-readable report formatted according to the FHIR standard, facilitating interoperability with electronic health records (EHR) systems.

Algorithm Workflow

Pre-processing

  1. Normalization: Adjust the intensity values in the CT image to standardize the input.
  2. Noise Reduction: Apply filters to reduce noise and enhance image quality.

Segmentation

  1. Organ Identification: Use a trained deep learning model (e.g., U-Net or Mask R-CNN) to identify and segment different organs and structures within the CT image.
  2. Boundary Detection: Precisely delineate the boundaries of each identified organ.
  3. Labeling: Assign labels to each segmented organ for easy identification.

Post-processing

  1. Refinement: Apply morphological operations to refine the segmented regions.
  2. Validation: Cross-check the segmented regions against known anatomical landmarks and medical databases to ensure accuracy.

Analysis and Measurement

  1. Volume Calculation: Compute the volume of each segmented organ.
  2. Shape Analysis: Analyze the shape and structural integrity of the organs.
  3. Comparison with Norms: Compare the measurements with standardized medical norms to identify any abnormalities.

Report Generation

  1. Segmented Images: Create annotated images showing the segmented organs with clear labels.
  2. PDF Report:
    • observations about each organ, including volume, shape, and any detected abnormalities.
    • Visuals: Include segmented images and relevant charts.
  3. FHIR Report Composition

Output Delivery

Segmented Images: Save the segmented images in a standard format (e.g., PNG, JPEG) with clear annotations. PDF Report: Generate a PDF document containing all analysis results and visuals. FHIR Report: Create a structured FHIR-compliant report in JSON or XML format, ready for integration with EHR systems.

FHIR Model

Profile

idΣ0..1id
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
buildHashExtensionS C0..1Extension(Complex)
inputParametersS C0..1Extension(canonical)
outputParametersS C0..1Extension(canonical)
doiExtensionS C0..*Extension(Complex)
resolutionRequirementExtensionS C0..1Extension(Complex)
algorithmSymbolExtensionS C0..1Extension(base64Binary)
deidentificationParametersS C0..1Extension(Reference(OmiDeidentificationParameters))
softwareLicenseExtensionS C0..1Extension(CodeableConcept)
modifierExtension?! C0..*Extension
id0..1string
extensionC0..*Extension
useΣ ?!0..1codeBinding
typeΣ0..1CodeableConceptBinding
systemS Σ0..1uriPattern
valueS Σ0..1string
periodΣ C0..1Period
assignerΣ C0..1Reference(Organization)
definitionC0..1Reference(DeviceDefinition)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
deviceIdentifierΣ0..1string
issuer0..1uri
jurisdiction0..1uri
carrierAIDCΣ0..1base64Binary
carrierHRFΣ0..1string
entryType0..1codeBinding
statusS Σ ?!1..1codeBinding
statusReason0..*CodeableConceptBinding
distinctIdentifier0..1string
manufacturer0..1string
manufactureDateS0..1dateTime
expirationDate0..1dateTime
lotNumber0..1string
serialNumber0..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBindingPattern
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBindingPattern
modelNumber0..1string
partNumber0..1string
type0..1CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
systemType1..1CodeableConcept
version0..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
type0..1CodeableConcept
component0..1Identifier
value1..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConcept
valueQuantityC0..0Quantity
valueCodeS0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantityC0..0Quantity
valueCodeS1..*CodeableConceptBinding
patientC0..1Reference(Patient)
ownerS C0..1Reference(OmiOrganization)
id0..1string
extensionC0..*Extension
systemS Σ C0..1codeBindingPattern
valueS Σ1..1string
useΣ ?!0..1codeBinding
rankΣ0..1positiveInt
periodΣ C0..1Period
locationC0..1Reference(Location)
url0..1uri
id0..1string
deviceNoteTypeExtensionS C0..1Extension(CodeableConcept)
authorReferenceReference(Organization | Patient | Practitioner | RelatedPerson)
authorStringstring
timeΣ0..1dateTime
textS Σ1..1markdown
safetyΣ0..*CodeableConcept
parentC0..1Reference(Device)

Example

Device

HealthcareService - FHIR Model

Profile

idΣ0..1id
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
serviceToHeartBeatObservationLinkExtensionS C1..1Extension(Reference(HeartbeatObservationProfile))
serviceToAlgorithmLinkExtensionS C0..*Extension(Reference(OmiDevice))
softwareLicenseExtensionS C0..1Extension(CodeableConcept)
modifierExtension?! C0..*Extension
id0..1string
extensionC0..*Extension
useΣ ?!0..1codeBinding
typeΣ0..1CodeableConceptBinding
systemS Σ0..1uriPattern
valueS Σ0..1string
periodΣ C0..1Period
assignerΣ C0..1Reference(Organization)
activeS Σ ?!0..1boolean
providedByS Σ C0..1Reference(OmiOrganization)
categoryS Σ1..*CodeableConceptPattern
typeΣ0..*CodeableConcept
specialtyΣ0..*CodeableConceptBinding
locationΣ C0..*Reference(Location)
nameS Σ0..1string
commentΣ0..1string
extraDetails0..1markdown
photoΣ C0..1Attachment
telecomC0..*ContactPoint
coverageAreaC0..*Reference(Location)
serviceProvisionCode0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
code0..1CodeableConcept
comment0..1markdown
program0..*CodeableConcept
characteristic0..*CodeableConcept
communication0..*CodeableConceptBinding
referralMethod0..*CodeableConcept
appointmentRequired0..1boolean
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
daysOfWeek0..*codeBinding
allDay0..1boolean
availableStartTime0..1time
availableEndTime0..1time
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
description1..1string
duringC0..1Period
availabilityExceptions0..1string
endpointS C0..*Reference(OmiAiEndpoint)

Example

HealthcareService

Heartbeat - FHIR Model

idΣ0..1id
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
buildHashExtensionS C0..1Extension(Complex)
modifierExtension?! C0..*Extension
identifierΣ0..*Identifier
basedOnΣ C0..*Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest)
partOfΣ C0..*Reference(ImagingStudy | Immunization | MedicationAdministration | MedicationDispense | MedicationStatement | Procedure)
statusΣ ?!1..1codeBinding
category0..*CodeableConceptBinding
codeΣ1..1CodeableConceptPattern
subjectΣ C0..1Reference(Device | Group | Location | Patient)
focusΣ C0..*Reference(Resource)
encounterΣ C0..1Reference(Encounter)
effectiveDateTimedateTime
effectiveInstantinstant
effectivePeriodPeriod
effectiveTimingTiming
issuedΣ0..1instant
performerΣ C0..*Reference(CareTeam | Organization | Patient | Practitioner | PractitionerRole | RelatedPerson)
valueBooleanboolean
valueCodeableConceptCodeableConcept
valueDateTimedateTime
valueIntegerinteger
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
note0..*Annotation
bodySite0..1CodeableConcept
method0..1CodeableConcept
specimenC0..1Reference(Specimen)
deviceC0..1Reference(Device | DeviceMetric)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
lowC0..1SimpleQuantity
highC0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
ageC0..1Range
text0..1string
hasMemberΣ C0..*Reference(MolecularSequence | Observation | QuestionnaireResponse)
derivedFromΣ C0..*Reference(DocumentReference | ImagingStudy | Media | MolecularSequence | Observation | QuestionnaireResponse)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConcept
valueBooleanboolean
valueCodeableConceptCodeableConcept
valueDateTimedateTime
valueIntegerinteger
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueBooleanboolean
valueDateTimedateTime
valueIntegerinteger
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
valueCodeableConceptΣ1..1CodeableConceptBinding
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueBooleanboolean
valueCodeableConceptCodeableConcept
valueDateTimedateTime
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
valueIntegerΣ1..1integer
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueBooleanboolean
valueCodeableConceptCodeableConcept
valueDateTimedateTime
valueIntegerinteger
valuePeriodPeriod
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
id0..1string
extensionC0..*Extension
valueΣ0..1decimal
comparatorΣ ?!0..1codeBinding
unitΣ0..1string
systemΣ C0..1uriPattern
codeΣ0..1codeBinding
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueBooleanboolean
valueCodeableConceptCodeableConcept
valueDateTimedateTime
valueIntegerinteger
valuePeriodPeriod
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueStringstring
valueTimetime
id0..1string
extensionC0..*Extension
valueΣ0..1decimal
comparatorΣ ?!0..1codeBinding
unitΣ0..1string
systemΣ C0..1uriPattern
codeΣ0..1codePattern
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)

Example

Observation

Input Parameters

Description

Inputs for the BOA algorithm contain an image (Binary resource) and optional structured metainformation (ImagingStudy resource).

Profile

idΣ0..1id
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C0..1Resource
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1OMIDocumentReference
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1MII_PR_Bildgebung_Bildgebungsstudie
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1Binary
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C0..1Resource
partΣ0..*see (parameter)

Example

Parameters

Output Parameters

Description

Outputs for the BOA algorithm include:

  • Segmented Images: Save the segmented images in a standard format (e.g., PNG, JPEG) with clear annotations.
  • PDF Report: Generate a PDF document containing all analysis results and visuals.
  • FHIR Report: Create a structured FHIR-compliant report in JSON or XML format, ready for integration with EHR systems.

Profile

idΣ0..1id
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C0..1Resource
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C0..1Resource
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1OMIDocumentReference
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1OMIDocumentReference
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1OmiOutputObservation
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceΣ C1..1Binary
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1stringPattern
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C1..1BoaReportComposition
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical
valueCodecode
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactDetailContactDetail
valueContactPointContactPoint
valueContributorContributor
valueCountCount
valueDataRequirementDataRequirement
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueDistanceDistance
valueDosageDosage
valueDurationDuration
valueExpressionExpression
valueHumanNameHumanName
valueIdid
valueIdentifierIdentifier
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueMetaMeta
valueMoneyMoney
valueOidoid
valueParameterDefinitionParameterDefinition
valuePeriodPeriod
valuePositiveIntpositiveInt
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueReferenceReference
valueRelatedArtifactRelatedArtifact
valueSampledDataSampledData
valueSignatureSignature
valueStringstring
valueTimetime
valueTimingTiming
valueTriggerDefinitionTriggerDefinition
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUsageContextUsageContext
valueUuiduuid
resourceS Σ C0..1Resource
partΣ0..*see (parameter)

Instance

Parameters