BodyOrganAnalyzer (BOA)

Executive summary

BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

Resource Overview

Resource Name FHIR Resource Type Link to profile Link to example
Algorithm Device Link Link
Service HealthcareService Link Link
Endpoint Endpoint Link Link
Input Parameters Parameters Link Link
Output Parameters Parameters Link Link
Output Observation Observation Link Link
Output Composition Composition Link Link

References

Description

Description

BOA takes in a high-resolution CT scan of the human body, provided in a standard medical imaging format (e.g., DICOM). It outputs several things:

  • segmented Images highlighting different organs and structures.
  • a pdf report containing analysis results, organ measurements, and relevant observations in table form.
  • a FHIR Report (Composition): A machine-readable report formatted according to the FHIR standard, facilitating interoperability with electronic health records (EHR) systems.

Algorithm Workflow

Pre-processing

  1. Normalization: Adjust the intensity values in the CT image to standardize the input.
  2. Noise Reduction: Apply filters to reduce noise and enhance image quality.

Segmentation

  1. Organ Identification: Use a trained deep learning model (e.g., U-Net or Mask R-CNN) to identify and segment different organs and structures within the CT image.
  2. Boundary Detection: Precisely delineate the boundaries of each identified organ.
  3. Labeling: Assign labels to each segmented organ for easy identification.

Post-processing

  1. Refinement: Apply morphological operations to refine the segmented regions.
  2. Validation: Cross-check the segmented regions against known anatomical landmarks and medical databases to ensure accuracy.

Analysis and Measurement

  1. Volume Calculation: Compute the volume of each segmented organ.
  2. Shape Analysis: Analyze the shape and structural integrity of the organs.
  3. Comparison with Norms: Compare the measurements with standardized medical norms to identify any abnormalities.

Report Generation

  1. Segmented Images: Create annotated images showing the segmented organs with clear labels.
  2. PDF Report:
    • observations about each organ, including volume, shape, and any detected abnormalities.
    • Visuals: Include segmented images and relevant charts.
  3. FHIR Report Composition

Output Delivery

Segmented Images: Save the segmented images in a standard format (e.g., PNG, JPEG) with clear annotations. PDF Report: Generate a PDF document containing all analysis results and visuals. FHIR Report: Create a structured FHIR-compliant report in JSON or XML format, ready for integration with EHR systems.

FHIR Model

Profile

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
buildHashExtensionS C0..1Extension(Complex)
inputParametersS C0..1Extension(canonical())
outputParametersS C0..1Extension(canonical())
doiExtensionS C0..*Extension(Complex)
resolutionRequirementExtensionS C0..1Extension(Complex)
algorithmSymbolExtensionS C0..1Extension(base64Binary)
deidentificationParametersS C0..1Extension(Reference(OmiDeidentificationParameters))
softwareLicenseExtensionS C0..1Extension(CodeableConcept)
modifierExtension?! C0..*Extension
id0..1string
extensionC0..*Extension
useΣ ?!0..1codeBinding
typeΣ0..1CodeableConceptBinding
systemS Σ0..1uriPattern
valueS Σ0..1string
periodΣ0..1Period
assignerΣ0..1Reference(Organization)
definition0..1Reference(DeviceDefinition)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
deviceIdentifierΣ0..1string
issuer0..1uri
jurisdiction0..1uri
carrierAIDCΣ0..1base64Binary
carrierHRFΣ0..1string
entryType0..1codeBinding
statusS Σ ?!1..1codeBinding
statusReason0..*CodeableConceptBinding
distinctIdentifier0..1string
manufacturer0..1string
manufactureDateS0..1dateTime
expirationDate0..1dateTime
lotNumber0..1string
serialNumber0..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBindingPattern
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
name1..1string
type1..1codeBindingPattern
modelNumber0..1string
partNumber0..1string
type0..1CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
systemType1..1CodeableConcept
version0..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
type0..1CodeableConcept
component0..1Identifier
value1..1string
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConcept
valueQuantity0..*Quantity
valueCodeS0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
typeS1..1CodeableConceptPattern
valueQuantity0..*Quantity
valueCodeS1..*CodeableConceptBinding
patient0..1Reference(Patient)
ownerS0..1Reference(OmiOrganization)
id0..1string
extensionC0..*Extension
systemS Σ C0..1codeBindingPattern
valueS Σ1..1string
useΣ ?!0..1codeBinding
rankΣ0..1positiveInt
periodΣ0..1Period
location0..1Reference(Location)
url0..1uri
id0..1string
deviceNoteTypeExtensionS C0..1Extension(CodeableConcept)
authorStringstring
authorReferenceReference(Practitioner | Patient | RelatedPerson | Organization)
timeΣ0..1dateTime
textS Σ1..1markdown
safetyΣ0..*CodeableConcept
parent0..1Reference(Device)

Example

Device

HealthcareService - FHIR Model

Profile

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
serviceToHeartBeatObservationLinkExtensionS C1..1Extension(Reference(HeartbeatObservationProfile))
serviceToAlgorithmLinkExtensionS C0..*Extension(Reference(OmiDevice))
softwareLicenseExtensionS C0..1Extension(CodeableConcept)
modifierExtension?! C0..*Extension
id0..1string
extensionC0..*Extension
useΣ ?!0..1codeBinding
typeΣ0..1CodeableConceptBinding
systemS Σ0..1uriPattern
valueS Σ0..1string
periodΣ0..1Period
assignerΣ0..1Reference(Organization)
activeS Σ ?!0..1boolean
providedByS Σ0..1Reference(OmiOrganization)
categoryS Σ1..*CodeableConceptPattern
typeΣ0..*CodeableConcept
specialtyΣ0..*CodeableConceptBinding
locationΣ0..*Reference(Location)
nameS Σ0..1string
commentΣ0..1string
extraDetails0..1markdown
photoΣ0..1Attachment
telecom0..*ContactPoint
coverageArea0..*Reference(Location)
serviceProvisionCode0..*CodeableConcept
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
code0..1CodeableConcept
comment0..1markdown
program0..*CodeableConcept
characteristic0..*CodeableConcept
communication0..*CodeableConceptBinding
referralMethod0..*CodeableConcept
appointmentRequired0..1boolean
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
daysOfWeek0..*codeBinding
allDay0..1boolean
availableStartTime0..1time
availableEndTime0..1time
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
description1..1string
during0..1Period
availabilityExceptions0..1string
endpointS0..*Reference(OmiAiEndpoint)

Example

Device

Heartbeat - FHIR Model

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
text0..1Narrative
contained0..*Resource
buildHashExtensionS C0..1Extension(Complex)
modifierExtension?! C0..*Extension
identifierΣ0..*Identifier
basedOnΣ0..*Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest)
partOfΣ0..*Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
category0..*CodeableConceptBinding
codeΣ1..1CodeableConceptPattern
subjectΣ0..1Reference(Patient | Group | Device | Location)
focusΣ0..*Reference(Resource)
encounterΣ0..1Reference(Encounter)
effectiveDateTimedateTime
effectivePeriodPeriod
effectiveTimingTiming
effectiveInstantinstant
issuedΣ0..1instant
performerΣ0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
note0..*Annotation
bodySite0..1CodeableConcept
method0..1CodeableConcept
specimen0..1Reference(Specimen)
device0..1Reference(Device | DeviceMetric)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
lowC0..1SimpleQuantity
highC0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
age0..1Range
text0..1string
hasMemberΣ0..*Reference(Observation | QuestionnaireResponse | MolecularSequence)
derivedFromΣ0..*Reference(DocumentReference | ImagingStudy | Media | QuestionnaireResponse | Observation | MolecularSequence)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConcept
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueQuantityQuantity
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
valueCodeableConceptΣ1..1CodeableConceptBinding
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
valueIntegerΣ1..1integer
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
id0..1string
extensionC0..*Extension
valueΣ0..1decimal
comparatorΣ ?!0..1codeBinding
unitΣ0..1string
systemΣ C0..1uriPattern
codeΣ0..1codeBinding
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
codeΣ1..1CodeableConceptPattern
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
id0..1string
extensionC0..*Extension
valueΣ0..1decimal
comparatorΣ ?!0..1codeBinding
unitΣ0..1string
systemΣ C0..1uriPattern
codeΣ0..1codePattern
dataAbsentReasonC0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)

Example

Observation

Input Parameters

Description

Inputs for the BOA algorithm contain an image (Binary resource) and optional structured metainformation (ImagingStudy resource).

Profile

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS Σ C0..1Resource
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS Σ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceC1..1OMIDocumentReference
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceΣ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceC1..1MII_PR_Bildgebung_Bildgebungsstudie
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceΣ C0..1Resource
partΣ0..*see (parameter)
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceΣ C1..1Binary
id0..1string
parameterQueryExtensionS C0..1Extension(Complex)
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceΣ C0..1Resource
partΣ0..*see (parameter)

Example

Parameters

Output Parameters

Description

Outputs for the BOA algorithm include:

  • Segmented Images: Save the segmented images in a standard format (e.g., PNG, JPEG) with clear annotations.
  • PDF Report: Generate a PDF document containing all analysis results and visuals.
  • FHIR Report: Create a structured FHIR-compliant report in JSON or XML format, ready for integration with EHR systems.

Profile

idΣ0..1string
metaΣ0..1Meta
implicitRulesΣ ?!0..1uri
language0..1codeBinding
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS Σ C0..1Resource
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS Σ C0..1Resource
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceC1..1OMIDocumentReference
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceC1..1OMIDocumentReference
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameΣ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceC1..1OmiOutputObservation
partΣ0..*see (parameter)
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1stringPattern
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS C1..1BoaReportComposition
id0..1string
extensionC0..*Extension
modifierExtensionΣ ?! C0..*Extension
nameS Σ1..1string
valueBase64Binarybase64Binary
valueBooleanboolean
valueCanonicalcanonical()
valueCodecode
valueDatedate
valueDateTimedateTime
valueDecimaldecimal
valueIdid
valueInstantinstant
valueIntegerinteger
valueMarkdownmarkdown
valueOidoid
valuePositiveIntpositiveInt
valueStringstring
valueTimetime
valueUnsignedIntunsignedInt
valueUriuri
valueUrlurl
valueUuiduuid
valueAddressAddress
valueAgeAge
valueAnnotationAnnotation
valueAttachmentAttachment
valueCodeableConceptCodeableConcept
valueCodingCoding
valueContactPointContactPoint
valueCountCount
valueDistanceDistance
valueDurationDuration
valueHumanNameHumanName
valueIdentifierIdentifier
valueMoneyMoney
valuePeriodPeriod
valueQuantityQuantity
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueSignatureSignature
valueTimingTiming
valueContactDetailContactDetail
valueContributorContributor
valueDataRequirementDataRequirement
valueExpressionExpression
valueParameterDefinitionParameterDefinition
valueRelatedArtifactRelatedArtifact
valueTriggerDefinitionTriggerDefinition
valueUsageContextUsageContext
valueDosageDosage
valueMetaMeta
valueReferenceReference()
resourceS Σ C0..1Resource
partΣ0..*see (parameter)

Instance

Parameters