Example Genetic Testing Request - JSON

The following example demostrates the FHIR bundle carrying the test requests information for genetic testing - WGS (whole genome sequencing).

{
    "resourceType": "Bundle",
    "id": "f862ec24-e05a-42d1-aea5-d0a9c092e6ae",
    "meta": {
        "lastUpdated": "2022-07-12T10:22:00+00:00",
        "profile":  [
            "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Bundle"
        ]
    },
    "identifier": {
        "system": "https://tools.ietf.org/html/rfc4122",
        "value": "f36927ef-7703-45ed-b0e5-6ec6723cf0f6"
    },
    "type": "message",
    "entry":  [
        {
            "fullUrl": "urn:uuid:a4409d7c-b613-477c-b623-87e60406c2f0",
            "resource": {
                "resourceType": "MessageHeader",
                "id": "a4409d7c-b613-477c-b623-87e60406c2f0",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-MessageHeader"
                    ]
                },
                "eventCoding": {
                    "system": "http://snomed.info/sct",
                    "code": "51201000000109",
                    "display": "WGS - whole genome sequencing"
                },
                "destination":  [
                    {
                        "name": "CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST",
                        "endpoint": "RGT",
                        "receiver": {
                            "reference": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e"
                        }
                    }
                ],
                "sender": {
                    "reference": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e"
                },
                "source": {
                    "name": "EPIC EPR (Version 2.1)",
                    "endpoint": "10.10.10.10"
                },
                "focus":  [
                    {
                        "reference": "urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af"
                    }
                ]
            }
        },
        {
            "fullUrl": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e",
            "resource": {
                "resourceType": "Organization",
                "id": "d6407de7-0e86-45eb-93cb-035094aaa49e",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://fhir.nhs.uk/Id/ods-organization-code",
                        "value": "RGD12"
                    }
                ],
                "name": "CAMBRIDGESHIRE AND PETERBOROUGH NHS FOUNDATION TRUST",
                "address":  [
                    {
                        "line":  [
                            "ELIZABETH HOUSE,",
                            "FULBOURN HOSPITAL",
                            "FULBOURN"
                        ],
                        "city": "CAMBRIDGE",
                        "postalCode": "CB21 5EF"
                    }
                ]
            }
        },
        {
            "fullUrl": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
            "resource": {
                "resourceType": "Organization",
                "id": "bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://fhir.nhs.uk/Id/ods-organization-code",
                        "value": "RGT"
                    }
                ],
                "name": "Cambridge University Hospitals NHS Foundation Trust",
                "address":  [
                    {
                        "line":  [
                            "CAMBRIDGE BIOMEDICAL CAMPUS"
                        ],
                        "city": "HILLS ROAD",
                        "district": "CAMBRIDGE",
                        "postalCode": "CB2 0QQ"
                    }
                ]
            }
        },
        {
            "fullUrl": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
            "resource": {
                "resourceType": "Practitioner",
                "id": "f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://fhir.nhs.uk/Id/sds-user-id",
                        "value": "3415870223"
                    }
                ],
                "name":  [
                    {
                        "use": "official",
                        "family": "Khan",
                        "given":  [
                            "Ibrahim"
                        ],
                        "prefix":  [
                            "Dr"
                        ],
                        "suffix":  [
                            "MB ChB",
                            "RCP"
                        ]
                    }
                ]
            }
        },
        {
            "fullUrl": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
            "resource": {
                "resourceType": "Patient",
                "id": "8d6c2cd5-0eec-496a-88d0-3785a135df09",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient"
                    ]
                },
                "identifier":  [
                    {
                        "extension":  [
                            {
                                "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
                                "valueCodeableConcept": {
                                    "coding":  [
                                        {
                                            "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatus",
                                            "code": "number-present-and-verified",
                                            "display": "Number present and verified"
                                        }
                                    ]
                                }
                            }
                        ],
                        "system": "https://fhir.nhs.uk/Id/nhs-number",
                        "value": "9432003812"
                    }
                ],
                "name":  [
                    {
                        "use": "official",
                        "family": "Davies",
                        "given":  [
                            "Michael"
                        ]
                    }
                ],
                "gender": "male",
                "birthDate": "1961-12-29"
            }
        },
        {
            "fullUrl": "urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af",
            "resource": {
                "resourceType": "ServiceRequest",
                "id": "d9df1431-22ac-462a-946a-f195f6c639af",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://tools.ietf.org/html/rfc4122",
                        "value": "7e9bbd01-4e52-420d-b05b-48bc671d6708"
                    }
                ],
                "status": "active",
                "intent": "order",
                "code": {
                    "coding":  [
                        {
                            "system": "http://snomed.info/sct",
                            "code": "62171000000109",
                            "display": "Epithelioid soft tissue tumour differential tumour and germline WGS (whole genome sequencing)"
                        }
                    ]
                },
                "subject": {
                    "reference": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
                    "display": "DAVIES, Michael"
                },
                "requester": {
                    "reference": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
                    "display": "KHAN"
                },
                "performer":  [
                    {
                        "reference": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
                        "display": "Cambridge University Hospitals NHS Foundation Trust"
                    }
                ]
            }
        },
        {
            "fullUrl": "urn:uuid:756a8361-79ce-4561-afcb-a91fe19df123",
            "resource": {
                "resourceType": "Specimen",
                "id": "756a8361-79ce-4561-afcb-a91fe19df123",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://tools.ietf.org/html/rfc4122",
                        "value": "1b663fc5-9dec-49c0-9eed-18a7cfa5a6b2"
                    }
                ],
                "status": "available",
                "type": {
                    "coding":  [
                        {
                            "system": "http://snomed.info/sct",
                            "code": "441479001",
                            "display": "Fresh tissue specimen"
                        }
                    ]
                },
                "subject": {
                    "reference": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
                    "display": "DAVIES, Michael"
                },
                "receivedTime": "2019-01-29T15:00:00+00:00",
                "collection": {
                    "collectedDateTime": "2019-01-29T11:00:00+00:00"
                }
            }
        },
        {
            "fullUrl": "urn:uuid:df3437c2-0829-44da-a620-8616bf0955fb",
            "resource": {
                "resourceType": "PractitionerRole",
                "id": "UKCore-PractitionerRole-GeneralPractitioner-Example",
                "meta": {
                    "profile":  [
                        "https://fhir.hl7.org.uk/StructureDefinition/UKCore-PractitionerRole"
                    ]
                },
                "identifier":  [
                    {
                        "system": "https://fhir.nhs.uk/Id/sds-role-profile-id",
                        "value": "100334993565"
                    }
                ],
                "practitioner": {
                    "reference": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01"
                },
                "organization": {
                    "reference": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e"
                },
                "code":  [
                    {
                        "coding":  [
                            {
                                "system": "http://snomed.info/sct",
                                "code": "768839008",
                                "display": "Consultant"
                            }
                        ]
                    }
                ],
                "specialty":  [
                    {
                        "coding":  [
                            {
                                "system": "http://snomed.info/sct",
                                "code": "394580004",
                                "display": "Clinical genetics"
                            }
                        ]
                    }
                ],
                "telecom":  [
                    {
                        "system": "phone",
                        "value": "0113 6323200",
                        "use": "work"
                    }
                ]
            }
        }
    ]
}