Example Genetic Testing Request - JSON

The following example demostrates the FHIR bundle carrying the test requests information for genetic testing - WGS (whole genome sequencing).

{
"resourceType": "Bundle",
"id": "f862ec24-e05a-42d1-aea5-d0a9c092e6ae",
"meta": {
"lastUpdated": "2022-07-12T10:22:00+00:00",
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Bundle"
]
},
"system": "https://tools.ietf.org/html/rfc4122",
"value": "f36927ef-7703-45ed-b0e5-6ec6723cf0f6"
},
"type": "message",
"entry": [
{
"fullUrl": "urn:uuid:a4409d7c-b613-477c-b623-87e60406c2f0",
"resourceType": "MessageHeader",
"id": "a4409d7c-b613-477c-b623-87e60406c2f0",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-MessageHeader"
]
},
"system": "http://snomed.info/sct",
"code": "51201000000109",
"display": "WGS - whole genome sequencing"
},
{
"name": "CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST",
"endpoint": "RGT",
"reference": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e"
}
}
],
"sender": {
"reference": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e"
},
"source": {
"name": "EPIC EPR (Version 2.1)",
"endpoint": "10.10.10.10"
},
"focus": [
{
"reference": "urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af"
}
]
}
},
{
"fullUrl": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e",
"resourceType": "Organization",
"id": "d6407de7-0e86-45eb-93cb-035094aaa49e",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
]
},
{
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "RGD12"
}
],
"name": "CAMBRIDGESHIRE AND PETERBOROUGH NHS FOUNDATION TRUST",
"address": [
{
"line": [
"ELIZABETH HOUSE,",
"FULBOURN HOSPITAL",
"FULBOURN"
],
"city": "CAMBRIDGE",
"postalCode": "CB21 5EF"
}
]
}
},
{
"fullUrl": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
"resourceType": "Organization",
"id": "bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
]
},
{
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "RGT"
}
],
"name": "Cambridge University Hospitals NHS Foundation Trust",
"address": [
{
"line": [
"CAMBRIDGE BIOMEDICAL CAMPUS"
],
"city": "HILLS ROAD",
"district": "CAMBRIDGE",
"postalCode": "CB2 0QQ"
}
]
}
},
{
"fullUrl": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
"resourceType": "Practitioner",
"id": "f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner"
]
},
{
"system": "https://fhir.nhs.uk/Id/sds-user-id",
"value": "3415870223"
}
],
"name": [
{
"use": "official",
"family": "Khan",
"given": [
"Ibrahim"
],
"prefix": [
"Dr"
],
"suffix": [
"MB ChB",
"RCP"
]
}
]
}
},
{
"fullUrl": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
"resourceType": "Patient",
"id": "8d6c2cd5-0eec-496a-88d0-3785a135df09",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient"
]
},
{
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatus",
"code": "number-present-and-verified",
"display": "Number present and verified"
}
]
}
}
],
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9432003812"
}
],
"name": [
{
"use": "official",
"family": "Davies",
"given": [
"Michael"
]
}
],
"gender": "male",
"birthDate": "1961-12-29"
}
},
{
"fullUrl": "urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af",
"resourceType": "ServiceRequest",
"id": "d9df1431-22ac-462a-946a-f195f6c639af",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest"
]
},
{
"system": "https://tools.ietf.org/html/rfc4122",
"value": "7e9bbd01-4e52-420d-b05b-48bc671d6708"
}
],
"status": "active",
"intent": "order",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "62171000000109",
"display": "Epithelioid soft tissue tumour differential tumour and germline WGS (whole genome sequencing)"
}
]
},
"subject": {
"reference": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
"display": "DAVIES, Michael"
},
"reference": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01",
"display": "KHAN"
},
{
"reference": "urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e",
"display": "Cambridge University Hospitals NHS Foundation Trust"
}
]
}
},
{
"fullUrl": "urn:uuid:756a8361-79ce-4561-afcb-a91fe19df123",
"resourceType": "Specimen",
"id": "756a8361-79ce-4561-afcb-a91fe19df123",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen"
]
},
{
"system": "https://tools.ietf.org/html/rfc4122",
"value": "1b663fc5-9dec-49c0-9eed-18a7cfa5a6b2"
}
],
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "441479001",
"display": "Fresh tissue specimen"
}
]
},
"subject": {
"reference": "urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09",
"display": "DAVIES, Michael"
},
"receivedTime": "2019-01-29T15:00:00+00:00",
"collectedDateTime": "2019-01-29T11:00:00+00:00"
}
}
},
{
"fullUrl": "urn:uuid:df3437c2-0829-44da-a620-8616bf0955fb",
"resourceType": "PractitionerRole",
"id": "UKCore-PractitionerRole-GeneralPractitioner-Example",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-PractitionerRole"
]
},
{
"system": "https://fhir.nhs.uk/Id/sds-role-profile-id",
"value": "100334993565"
}
],
"reference": "urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01"
},
"reference": "urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e"
},
"code": [
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "768839008",
"display": "Consultant"
}
]
}
],
{
"coding": [
{
"system": "http://snomed.info/sct",
"code": "394580004",
"display": "Clinical genetics"
}
]
}
],
"telecom": [
{
"system": "phone",
"value": "0113 6323200",
"use": "work"
}
]
}
}
]
}