Example Genetic Testing Request - XML

The following example demostrates the FHIR bundle carrying the test requests information for genetic testing - WGS (whole genome sequencing).

<Bundle xmlns="http://hl7.org/fhir">
    <id value="f862ec24-e05a-42d1-aea5-d0a9c092e6ae" />
    <meta>
        <lastUpdated value="2022-07-12T10:22:00+00:00" />
        <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Bundle" />
    </meta>
    <identifier>
        <system value="https://tools.ietf.org/html/rfc4122" />
        <value value="f36927ef-7703-45ed-b0e5-6ec6723cf0f6" />
    </identifier>
    <type value="message" />
    <entry>
        <fullUrl value="urn:uuid:a4409d7c-b613-477c-b623-87e60406c2f0" />
        <resource>
            <MessageHeader>
                <id value="a4409d7c-b613-477c-b623-87e60406c2f0" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-MessageHeader" />
                </meta>
                <eventCoding>
                    <system value="http://snomed.info/sct" />
                    <code value="51201000000109" />
                    <display value="WGS - whole genome sequencing" />
                </eventCoding>
                <destination>
                    <name value="CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST" />
                    <endpoint value="RGT" />
                    <receiver>
                        <reference value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
                    </receiver>
                </destination>
                <sender>
                    <reference value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
                </sender>
                <source>
                    <name value="EPIC EPR (Version 2.1)" />
                    <endpoint value="10.10.10.10" />
                </source>
                <focus>
                    <reference value="urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af" />
                </focus>
            </MessageHeader>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
        <resource>
            <Organization>
                <id value="d6407de7-0e86-45eb-93cb-035094aaa49e" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
                </meta>
                <identifier>
                    <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
                    <value value="RGD12" />
                </identifier>
                <name value="CAMBRIDGESHIRE AND PETERBOROUGH NHS FOUNDATION TRUST" />
                <address>
                    <line value="ELIZABETH HOUSE," />
                    <line value="FULBOURN HOSPITAL" />
                    <line value="FULBOURN" />
                    <city value="CAMBRIDGE" />
                    <postalCode value="CB21 5EF" />
                </address>
            </Organization>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
        <resource>
            <Organization>
                <id value="bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
                </meta>
                <identifier>
                    <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
                    <value value="RGT" />
                </identifier>
                <name value="Cambridge University Hospitals NHS Foundation Trust" />
                <address>
                    <line value="CAMBRIDGE BIOMEDICAL CAMPUS" />
                    <city value="HILLS ROAD" />
                    <district value="CAMBRIDGE" />
                    <postalCode value="CB2 0QQ" />
                </address>
            </Organization>
        </resource>
    </entry>
    <!--  Requesting Practitioner,The consultant, Dr Ibrahim Khan  -->
    <entry>
        <fullUrl value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
        <resource>
            <Practitioner>
                <id value="f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner" />
                </meta>
                <identifier>
                    <system value="https://fhir.nhs.uk/Id/sds-user-id" />
                    <value value="3415870223" />
                </identifier>
                <name>
                    <use value="official" />
                    <family value="Khan" />
                    <given value="Ibrahim" />
                    <prefix value="Dr" />
                    <suffix value="MB ChB" />
                    <suffix value="RCP" />
                </name>
            </Practitioner>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
        <resource>
            <Patient>
                <id value="8d6c2cd5-0eec-496a-88d0-3785a135df09" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient" />
                </meta>
                <identifier>
                    <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus">
                        <valueCodeableConcept>
                            <coding>
                                <system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatus" />
                                <code value="number-present-and-verified" />
                                <display value="Number present and verified" />
                            </coding>
                        </valueCodeableConcept>
                    </extension>
                    <system value="https://fhir.nhs.uk/Id/nhs-number" />
                    <value value="9432003812" />
                </identifier>
                <name>
                    <use value="official" />
                    <family value="Davies" />
                    <given value="Michael" />
                </name>
                <gender value="male" />
                <birthDate value="1961-12-29" />
            </Patient>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af" />
        <resource>
            <ServiceRequest>
                <id value="d9df1431-22ac-462a-946a-f195f6c639af" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest" />
                </meta>
                <!--  A business level identifier for the original test request.Set by the requesting organisation  -->
                <identifier>
                    <system value="https://tools.ietf.org/html/rfc4122" />
                    <value value="7e9bbd01-4e52-420d-b05b-48bc671d6708" />
                </identifier>
                <status value="active" />
                <intent value="order" />
                <code>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="62171000000109" />
                        <display value="Epithelioid soft tissue tumour differential tumour and germline WGS (whole genome sequencing)" />
                    </coding>
                </code>
                <subject>
                    <reference value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
                    <display value="DAVIES, Michael" />
                </subject>
                <requester>
                    <reference value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
                    <display value="KHAN" />
                </requester>
                <performer>
                    <reference value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
                    <display value="Cambridge University Hospitals NHS Foundation Trust" />
                </performer>
            </ServiceRequest>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:756a8361-79ce-4561-afcb-a91fe19df123" />
        <resource>
            <Specimen>
                <id value="756a8361-79ce-4561-afcb-a91fe19df123" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen" />
                </meta>
                <identifier>
                    <system value="https://tools.ietf.org/html/rfc4122" />
                    <value value="1b663fc5-9dec-49c0-9eed-18a7cfa5a6b2" />
                </identifier>
                <status value="available" />
                <type>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="441479001" />
                        <display value="Fresh tissue specimen" />
                    </coding>
                </type>
                <subject>
                    <reference value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
                    <display value="DAVIES, Michael" />
                </subject>
                <receivedTime value="2019-01-29T15:00:00+00:00" />
                <collection>
                    <collectedDateTime value="2019-01-29T11:00:00+00:00" />
                </collection>
            </Specimen>
        </resource>
    </entry>
    <entry>
        <fullUrl value="urn:uuid:df3437c2-0829-44da-a620-8616bf0955fb" />
        <resource>
            <PractitionerRole>
                <id value="UKCore-PractitionerRole-GeneralPractitioner-Example" />
                <meta>
                    <profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-PractitionerRole" />
                </meta>
                <identifier>
                    <system value="https://fhir.nhs.uk/Id/sds-role-profile-id" />
                    <value value="100334993565" />
                </identifier>
                <practitioner>
                    <reference value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
                </practitioner>
                <organization>
                    <reference value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
                </organization>
                <code>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="768839008" />
                        <display value="Consultant" />
                    </coding>
                </code>
                <specialty>
                    <coding>
                        <system value="http://snomed.info/sct" />
                        <code value="394580004" />
                        <display value="Clinical genetics" />
                    </coding>
                </specialty>
                <telecom>
                    <system value="phone" />
                    <value value="0113 6323200" />
                    <use value="work" />
                </telecom>
            </PractitionerRole>
        </resource>
    </entry>
</Bundle>