Example Genetic Testing Request - XML

The following example demostrates the FHIR bundle carrying the test requests information for genetic testing - WGS (whole genome sequencing).

<Bundle xmlns="http://hl7.org/fhir">
<id value="f862ec24-e05a-42d1-aea5-d0a9c092e6ae" />
<meta>
<lastUpdated value="2022-07-12T10:22:00+00:00" />
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Bundle" />
</meta>
<identifier>
<system value="https://tools.ietf.org/html/rfc4122" />
<value value="f36927ef-7703-45ed-b0e5-6ec6723cf0f6" />
</identifier>
<type value="message" />
<entry>
<fullUrl value="urn:uuid:a4409d7c-b613-477c-b623-87e60406c2f0" />
<resource>
<MessageHeader>
<id value="a4409d7c-b613-477c-b623-87e60406c2f0" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-MessageHeader" />
</meta>
<eventCoding>
<system value="http://snomed.info/sct" />
<code value="51201000000109" />
<display value="WGS - whole genome sequencing" />
</eventCoding>
<destination>
<name value="CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST" />
<endpoint value="RGT" />
<receiver>
<reference value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
</receiver>
</destination>
<sender>
<reference value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
</sender>
<source>
<name value="EPIC EPR (Version 2.1)" />
<endpoint value="10.10.10.10" />
</source>
<focus>
<reference value="urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af" />
</focus>
</MessageHeader>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
<resource>
<Organization>
<id value="d6407de7-0e86-45eb-93cb-035094aaa49e" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="RGD12" />
</identifier>
<name value="CAMBRIDGESHIRE AND PETERBOROUGH NHS FOUNDATION TRUST" />
<address>
<line value="ELIZABETH HOUSE," />
<line value="FULBOURN HOSPITAL" />
<line value="FULBOURN" />
<city value="CAMBRIDGE" />
<postalCode value="CB21 5EF" />
</address>
</Organization>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
<resource>
<Organization>
<id value="bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="RGT" />
</identifier>
<name value="Cambridge University Hospitals NHS Foundation Trust" />
<address>
<line value="CAMBRIDGE BIOMEDICAL CAMPUS" />
<city value="HILLS ROAD" />
<district value="CAMBRIDGE" />
<postalCode value="CB2 0QQ" />
</address>
</Organization>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
<resource>
<Practitioner>
<id value="f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-user-id" />
<value value="3415870223" />
</identifier>
<name>
<use value="official" />
<family value="Khan" />
<given value="Ibrahim" />
<prefix value="Dr" />
<suffix value="MB ChB" />
<suffix value="RCP" />
</name>
</Practitioner>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
<resource>
<Patient>
<id value="8d6c2cd5-0eec-496a-88d0-3785a135df09" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient" />
</meta>
<identifier>
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatus" />
<code value="number-present-and-verified" />
<display value="Number present and verified" />
</coding>
</valueCodeableConcept>
</extension>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9432003812" />
</identifier>
<name>
<use value="official" />
<family value="Davies" />
<given value="Michael" />
</name>
<gender value="male" />
<birthDate value="1961-12-29" />
</Patient>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:d9df1431-22ac-462a-946a-f195f6c639af" />
<resource>
<ServiceRequest>
<id value="d9df1431-22ac-462a-946a-f195f6c639af" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest" />
</meta>
<identifier>
<system value="https://tools.ietf.org/html/rfc4122" />
<value value="7e9bbd01-4e52-420d-b05b-48bc671d6708" />
</identifier>
<status value="active" />
<intent value="order" />
<code>
<coding>
<system value="http://snomed.info/sct" />
<code value="62171000000109" />
<display value="Epithelioid soft tissue tumour differential tumour and germline WGS (whole genome sequencing)" />
</coding>
</code>
<subject>
<reference value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
<display value="DAVIES, Michael" />
</subject>
<requester>
<reference value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
<display value="KHAN" />
</requester>
<performer>
<reference value="urn:uuid:bf7a76d3-5b44-4194-a9e0-d1cc1ea5e50e" />
<display value="Cambridge University Hospitals NHS Foundation Trust" />
</performer>
</ServiceRequest>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:756a8361-79ce-4561-afcb-a91fe19df123" />
<resource>
<Specimen>
<id value="756a8361-79ce-4561-afcb-a91fe19df123" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen" />
</meta>
<identifier>
<system value="https://tools.ietf.org/html/rfc4122" />
<value value="1b663fc5-9dec-49c0-9eed-18a7cfa5a6b2" />
</identifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="441479001" />
<display value="Fresh tissue specimen" />
</coding>
</type>
<subject>
<reference value="urn:uuid:8d6c2cd5-0eec-496a-88d0-3785a135df09" />
<display value="DAVIES, Michael" />
</subject>
<receivedTime value="2019-01-29T15:00:00+00:00" />
<collection>
<collectedDateTime value="2019-01-29T11:00:00+00:00" />
</collection>
</Specimen>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:df3437c2-0829-44da-a620-8616bf0955fb" />
<resource>
<PractitionerRole>
<id value="UKCore-PractitionerRole-GeneralPractitioner-Example" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-PractitionerRole" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/sds-role-profile-id" />
<value value="100334993565" />
</identifier>
<practitioner>
<reference value="urn:uuid:f25e9d63-6a4e-4de6-b9dc-c912fda62b01" />
</practitioner>
<organization>
<reference value="urn:uuid:d6407de7-0e86-45eb-93cb-035094aaa49e" />
</organization>
<code>
<coding>
<system value="http://snomed.info/sct" />
<code value="768839008" />
<display value="Consultant" />
</coding>
</code>
<specialty>
<coding>
<system value="http://snomed.info/sct" />
<code value="394580004" />
<display value="Clinical genetics" />
</coding>
</specialty>
<telecom>
<system value="phone" />
<value value="0113 6323200" />
<use value="work" />
</telecom>
</PractitionerRole>
</resource>
</entry>
</Bundle>