ConceptMap Genomic Risk Reason for Specimen Special Handling

Usage

ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code

HTML View

to SNOMED_CT

SourceEquivalenceDestination
anthrax (Anthrax)equivalent409498004 (Anthrax (disorder))
Brucellosis (Brucellosis)equivalent75702008 (Brucellosis (disorder))
ecoli0157 (E coli 0157)equivalent127531000119106 (Infection caused by Escherichia coli O157 (disorder))
haemolytic-uraemic-syndrome (Haemolytic Uraemic Syndrome)equivalent111407006 (Hemolytic uremic syndrome (disorder))
hiv-infection (HIV Infection)equivalent86406008 (Human immunodeficiency virus infection (disorder))
iv-drug-users (IV Drug Users)equivalent228388006 (Intravenous drug user (finding))
jakob-creutzfeldt-disease (Jakob-Creutzfeldt Disease)equivalent792004 (Jakob-Creutzfeldt disease (disorder))
melioidosis (Melioidosis)equivalent428111003 (Melioidosis (disorder))
tuberculosis (Tuberculosis)equivalent56717001 (Tuberculosis (disorder))
typhoid-fever (Typhoid Fever)equivalent4834000 (Typhoid fever (disorder))
viral-hepatitis (Viral Hepatitis)equivalent3738000 (Viral hepatitis (disorder))

Table View

ConceptMap.id[0]genomics-risk-reason-for-specimen-specialhandling
ConceptMap.url[0]https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling
ConceptMap.version[0]0.2.0
ConceptMap.name[0]GenomicsRiskReasonForSpecimenSpecialHandling
ConceptMap.title[0]Genomics Risk Reason for Specimen Special Handling
ConceptMap.status[0]draft
ConceptMap.date[0]2024-08-09T18:45:00.000Z
ConceptMap.publisher[0]NHS England
ConceptMap.contact[0].name[0]NHS England
ConceptMap.contact[0].telecom[0].system[0]email
ConceptMap.contact[0].telecom[0].value[0]interoperabilityteam@nhs.net
ConceptMap.description[0]A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.
ConceptMap.purpose[0]ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code
ConceptMap.copyright[0]Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
ConceptMap.target[0]http://snomed.info/sct
ConceptMap.group[0].source[0]https://future.nhs.uk/NHSgenomics/view?objectId=222250117
ConceptMap.group[0].target[0]http://snomed.info/sct
ConceptMap.group[0].element[0].code[0]anthrax
ConceptMap.group[0].element[0].display[0]Anthrax
ConceptMap.group[0].element[0].target[0].code[0]409498004
ConceptMap.group[0].element[0].target[0].display[0]Anthrax (disorder)
ConceptMap.group[0].element[0].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[1].code[0]Brucellosis
ConceptMap.group[0].element[1].display[0]Brucellosis
ConceptMap.group[0].element[1].target[0].code[0]75702008
ConceptMap.group[0].element[1].target[0].display[0]Brucellosis (disorder)
ConceptMap.group[0].element[1].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[2].code[0]ecoli0157
ConceptMap.group[0].element[2].display[0]E coli 0157
ConceptMap.group[0].element[2].target[0].code[0]127531000119106
ConceptMap.group[0].element[2].target[0].display[0]Infection caused by Escherichia coli O157 (disorder)
ConceptMap.group[0].element[2].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[3].code[0]haemolytic-uraemic-syndrome
ConceptMap.group[0].element[3].display[0]Haemolytic Uraemic Syndrome
ConceptMap.group[0].element[3].target[0].code[0]111407006
ConceptMap.group[0].element[3].target[0].display[0]Hemolytic uremic syndrome (disorder)
ConceptMap.group[0].element[3].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[4].code[0]hiv-infection
ConceptMap.group[0].element[4].display[0]HIV Infection
ConceptMap.group[0].element[4].target[0].code[0]86406008
ConceptMap.group[0].element[4].target[0].display[0]Human immunodeficiency virus infection (disorder)
ConceptMap.group[0].element[4].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[5].code[0]iv-drug-users
ConceptMap.group[0].element[5].display[0]IV Drug Users
ConceptMap.group[0].element[5].target[0].code[0]228388006
ConceptMap.group[0].element[5].target[0].display[0]Intravenous drug user (finding)
ConceptMap.group[0].element[5].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[6].code[0]jakob-creutzfeldt-disease
ConceptMap.group[0].element[6].display[0]Jakob-Creutzfeldt Disease
ConceptMap.group[0].element[6].target[0].code[0]792004
ConceptMap.group[0].element[6].target[0].display[0]Jakob-Creutzfeldt disease (disorder)
ConceptMap.group[0].element[6].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[7].code[0]melioidosis
ConceptMap.group[0].element[7].display[0]Melioidosis
ConceptMap.group[0].element[7].target[0].code[0]428111003
ConceptMap.group[0].element[7].target[0].display[0]Melioidosis (disorder)
ConceptMap.group[0].element[7].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[8].code[0]tuberculosis
ConceptMap.group[0].element[8].display[0]Tuberculosis
ConceptMap.group[0].element[8].target[0].code[0]56717001
ConceptMap.group[0].element[8].target[0].display[0]Tuberculosis (disorder)
ConceptMap.group[0].element[8].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[9].code[0]typhoid-fever
ConceptMap.group[0].element[9].display[0]Typhoid Fever
ConceptMap.group[0].element[9].target[0].code[0]4834000
ConceptMap.group[0].element[9].target[0].display[0]Typhoid fever (disorder)
ConceptMap.group[0].element[9].target[0].equivalence[0]equivalent
ConceptMap.group[0].element[10].code[0]viral-hepatitis
ConceptMap.group[0].element[10].display[0]Viral Hepatitis
ConceptMap.group[0].element[10].target[0].code[0]3738000
ConceptMap.group[0].element[10].target[0].display[0]Viral hepatitis (disorder)
ConceptMap.group[0].element[10].target[0].equivalence[0]equivalent

XML View

<ConceptMap xmlns="http://hl7.org/fhir">
    <id value="genomics-risk-reason-for-specimen-specialhandling" />
    <url value="https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling" />
    <version value="0.2.0" />
    <name value="GenomicsRiskReasonForSpecimenSpecialHandling" />
    <title value="Genomics Risk Reason for Specimen Special Handling" />
    <status value="draft" />
    <date value="2024-08-09T18:45:00.000Z" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
        </telecom>
    </contact>
    <description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
    <purpose value="ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code" />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <targetUri value="http://snomed.info/sct" />
    <group>
        <source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
        <target value="http://snomed.info/sct" />
        <element>
            <code value="anthrax" />
            <display value="Anthrax" />
            <target>
                <code value="409498004" />
                <display value="Anthrax (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="Brucellosis" />
            <display value="Brucellosis" />
            <target>
                <code value="75702008" />
                <display value="Brucellosis (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="ecoli0157" />
            <display value="E coli 0157" />
            <target>
                <code value="127531000119106" />
                <display value="Infection caused by Escherichia coli O157 (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="haemolytic-uraemic-syndrome" />
            <display value="Haemolytic Uraemic Syndrome" />
            <target>
                <code value="111407006" />
                <display value="Hemolytic uremic syndrome (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="hiv-infection" />
            <display value="HIV Infection" />
            <target>
                <code value="86406008" />
                <display value="Human immunodeficiency virus infection (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="iv-drug-users" />
            <display value="IV Drug Users" />
            <target>
                <code value="228388006" />
                <display value="Intravenous drug user (finding)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="jakob-creutzfeldt-disease" />
            <display value="Jakob-Creutzfeldt Disease" />
            <target>
                <code value="792004" />
                <display value="Jakob-Creutzfeldt disease (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="melioidosis" />
            <display value="Melioidosis" />
            <target>
                <code value="428111003" />
                <display value="Melioidosis (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="tuberculosis" />
            <display value="Tuberculosis" />
            <target>
                <code value="56717001" />
                <display value="Tuberculosis (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="typhoid-fever" />
            <display value="Typhoid Fever" />
            <target>
                <code value="4834000" />
                <display value="Typhoid fever (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
        <element>
            <code value="viral-hepatitis" />
            <display value="Viral Hepatitis" />
            <target>
                <code value="3738000" />
                <display value="Viral hepatitis (disorder)" />
                <equivalence value="equivalent" />
            </target>
        </element>
    </group>
</ConceptMap>

JSON View

{
    "resourceType": "ConceptMap",
    "id": "genomics-risk-reason-for-specimen-specialhandling",
    "url": "https://fhir.nhs.uk/ConceptMap/genomics-risk-reason-for-specimen-specialhandling",
    "version": "0.2.0",
    "name": "GenomicsRiskReasonForSpecimenSpecialHandling",
    "title": "Genomics Risk Reason for Specimen Special Handling",
    "status": "draft",
    "date": "2024-08-09T18:45:00.000Z",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net"
                }
            ]
        }
    ],
    "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
    "purpose": "ConceptMap used for the translation and recording of the risk reason for specimen special handling . This is intended for the element Specimen.collection.extension:specimen-specialHandling.valueCoding.code",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "targetUri": "http://snomed.info/sct",
    "group":  [
        {
            "source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
            "target": "http://snomed.info/sct",
            "element":  [
                {
                    "code": "anthrax",
                    "display": "Anthrax",
                    "target":  [
                        {
                            "code": "409498004",
                            "display": "Anthrax (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "Brucellosis",
                    "display": "Brucellosis",
                    "target":  [
                        {
                            "code": "75702008",
                            "display": "Brucellosis (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "ecoli0157",
                    "display": "E coli 0157",
                    "target":  [
                        {
                            "code": "127531000119106",
                            "display": "Infection caused by Escherichia coli O157 (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "haemolytic-uraemic-syndrome",
                    "display": "Haemolytic Uraemic Syndrome",
                    "target":  [
                        {
                            "code": "111407006",
                            "display": "Hemolytic uremic syndrome (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "hiv-infection",
                    "display": "HIV Infection",
                    "target":  [
                        {
                            "code": "86406008",
                            "display": "Human immunodeficiency virus infection (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "iv-drug-users",
                    "display": "IV Drug Users",
                    "target":  [
                        {
                            "code": "228388006",
                            "display": "Intravenous drug user (finding)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "jakob-creutzfeldt-disease",
                    "display": "Jakob-Creutzfeldt Disease",
                    "target":  [
                        {
                            "code": "792004",
                            "display": "Jakob-Creutzfeldt disease (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "melioidosis",
                    "display": "Melioidosis",
                    "target":  [
                        {
                            "code": "428111003",
                            "display": "Melioidosis (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "tuberculosis",
                    "display": "Tuberculosis",
                    "target":  [
                        {
                            "code": "56717001",
                            "display": "Tuberculosis (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "typhoid-fever",
                    "display": "Typhoid Fever",
                    "target":  [
                        {
                            "code": "4834000",
                            "display": "Typhoid fever (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                },
                {
                    "code": "viral-hepatitis",
                    "display": "Viral Hepatitis",
                    "target":  [
                        {
                            "code": "3738000",
                            "display": "Viral hepatitis (disorder)",
                            "equivalence": "equivalent"
                        }
                    ]
                }
            ]
        }
    ]
}