Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
Specimen
Specimen-BloodEDTA-Example
Example of a placeholder Specimen resource that is awaiting collection.
Specimen |
id : Specimen-BloodEDTA-Example |
identifier |
system : https://fhir.add.nhs.uk/Id/specimenId |
value : RGT03135 |
status : unavailable |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-MeirLieberman-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307873 |
request |
reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example |
{ "resourceType": "Specimen", "id": "Specimen-BloodEDTA-Example", "identifier": [ { "system": "https://fhir.add.nhs.uk/Id/specimenId", "value": "RGT03135" } ], "status": "unavailable", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-MeirLieberman-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307873" } }, "request": [ { "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-BloodEDTA-Example" /> <identifier> <system value="https://fhir.add.nhs.uk/Id/specimenId" /> <value value="RGT03135" /> </identifier> <status value="unavailable" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-MeirLieberman-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307873" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-Example" /> </request> </Specimen>
Specimen-BloodEDTA-WithCollectionDetails-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-BloodEDTA-WithCollectionDetails-Example |
identifier |
system : https://fhir.leedsth.nhs.uk/Id/specimenId |
value : RR8-696B0-17843 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-FayMutlow-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307806 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : Phletobomist-Lois Lane |
collected : 2023-10-05T15:30:00Z |
request |
reference : ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example |
{ "resourceType": "Specimen", "id": "Specimen-BloodEDTA-WithCollectionDetails-Example", "identifier": [ { "system": "https://fhir.leedsth.nhs.uk/Id/specimenId", "value": "RR8-696B0-17843" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-FayMutlow-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307806" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "Phletobomist-Lois Lane" }, "collectedDateTime": "2023-10-05T15:30:00Z" }, "request": [ { "reference": "ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-BloodEDTA-WithCollectionDetails-Example" /> <identifier> <system value="https://fhir.leedsth.nhs.uk/Id/specimenId" /> <value value="RR8-696B0-17843" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-FayMutlow-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307806" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-SavedTestOrderUpdated-CascadeTesting-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="Phletobomist-Lois Lane" /> </collector> <collectedDateTime value="2023-10-05T15:30:00Z" /> </collection> </Specimen>
Specimen-BoneMarrowAspiration-Example
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-BoneMarrowAspiration-Example |
identifier |
system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24 |
value : RR81234 |
assigner |
identifier |
system : https://fhir.nhs.uk/Id/ods-organization-code |
value : 696B0 |
accessionIdentifier |
system : https://www.leedsth.nhs.uk/path |
value : RR8123745 |
assigner |
identifier |
system : https://fhir.nhs.uk/Id/ods-organization-code |
value : RR8 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 396997002 |
display : Specimen from bone marrow obtained by aspiration |
subject |
reference : Patient/Patient-PatrickSammy-Example |
receivedTime : 2023-08-29T11:00:00Z |
request |
reference : ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example |
{ "resourceType": "Specimen", "id": "Specimen-BoneMarrowAspiration-Example", "identifier": [ { "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24", "value": "RR81234", "assigner": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", "value": "696B0" } } } ], "accessionIdentifier": { "system": "https://www.leedsth.nhs.uk/path", "value": "RR8123745", "assigner": { "identifier": { "system": "https://fhir.nhs.uk/Id/ods-organization-code", "value": "RR8" } } }, "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "396997002", "display": "Specimen from bone marrow obtained by aspiration" } ] }, "subject": { "reference": "Patient/Patient-PatrickSammy-Example" }, "receivedTime": "2023-08-29T11:00:00Z", "request": [ { "reference": "ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-BoneMarrowAspiration-Example" /> <identifier> <system value="urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24" /> <value value="RR81234" /> <assigner> <identifier> <system value="https://fhir.nhs.uk/Id/ods-organization-code" /> <value value="696B0" /> </identifier> </assigner> </identifier> <accessionIdentifier> <system value="https://www.leedsth.nhs.uk/path" /> <value value="RR8123745" /> <assigner> <identifier> <system value="https://fhir.nhs.uk/Id/ods-organization-code" /> <value value="RR8" /> </identifier> </assigner> </accessionIdentifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="396997002" /> <display value="Specimen from bone marrow obtained by aspiration" /> </coding> </type> <subject> <reference value="Patient/Patient-PatrickSammy-Example" /> </subject> <receivedTime value="2023-08-29T11:00:00Z" /> <request> <reference value="ServiceRequest-NonWGSTestOrderForm-HaemOncology-Example" /> </request> </Specimen>
Specimen-JamesMetcalfeBloodEDTA-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-JamesMetcalfeBloodEDTA-Example |
identifier |
system : https://fhir.medway.nhs.uk/Id/specimenId |
value : RH-696B0-17843 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-JamesMetcalfe-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307806 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : Phletobomist-Lois Lane |
collected : 2023-10-02T10:00:00Z |
request |
reference : ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example |
{ "resourceType": "Specimen", "id": "Specimen-JamesMetcalfeBloodEDTA-Example", "identifier": [ { "system": "https://fhir.medway.nhs.uk/Id/specimenId", "value": "RH-696B0-17843" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-JamesMetcalfe-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307806" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "Phletobomist-Lois Lane" }, "collectedDateTime": "2023-10-02T10:00:00Z" }, "request": [ { "reference": "ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-JamesMetcalfeBloodEDTA-Example" /> <identifier> <system value="https://fhir.medway.nhs.uk/Id/specimenId" /> <value value="RH-696B0-17843" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-JamesMetcalfe-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307806" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-WGSTestOrderFormUpdated-DirectToLab-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="Phletobomist-Lois Lane" /> </collector> <collectedDateTime value="2023-10-02T10:00:00Z" /> </collection> </Specimen>
Specimen-PheobeSmitham-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-PheobeSmitham-Example |
identifier |
system : https://fhir.leedssth.nhs.uk//Id/specimenId |
value : RGD-69050-P-RR12764 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-PheobeSmitham-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307539 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : Phletobomist-Lois Lane |
collected : 2023-09-17 |
request |
reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example |
{ "resourceType": "Specimen", "id": "Specimen-PheobeSmitham-Example", "identifier": [ { "system": "https://fhir.leedssth.nhs.uk//Id/specimenId", "value": "RGD-69050-P-RR12764" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-PheobeSmitham-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307539" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "Phletobomist-Lois Lane" }, "collectedDateTime": "2023-09-17" }, "request": [ { "reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-PheobeSmitham-Example" /> <identifier> <system value="https://fhir.leedssth.nhs.uk//Id/specimenId" /> <value value="RGD-69050-P-RR12764" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-PheobeSmitham-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307539" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="Phletobomist-Lois Lane" /> </collector> <collectedDateTime value="2023-09-17" /> </collection> </Specimen>
Specimen-PheobeSmithamFather-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-PheobeSmithamFather-Example |
identifier |
system : https://fhir.leedssth.nhs.uk//Id/specimenId |
value : RGD-69050-FTH-RR12764 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-PheobeSmithamFather-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307636 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : Phletobomist-Lois Lane |
collected : 2023-09-17 |
request |
reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example |
{ "resourceType": "Specimen", "id": "Specimen-PheobeSmithamFather-Example", "identifier": [ { "system": "https://fhir.leedssth.nhs.uk//Id/specimenId", "value": "RGD-69050-FTH-RR12764" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-PheobeSmithamFather-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307636" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "Phletobomist-Lois Lane" }, "collectedDateTime": "2023-09-17" }, "request": [ { "reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-PheobeSmithamFather-Example" /> <identifier> <system value="https://fhir.leedssth.nhs.uk//Id/specimenId" /> <value value="RGD-69050-FTH-RR12764" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-PheobeSmithamFather-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307636" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="Phletobomist-Lois Lane" /> </collector> <collectedDateTime value="2023-09-17" /> </collection> </Specimen>
Specimen-PheobeSmithamMother-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-PheobeSmithamMother-Example |
identifier |
system : https://fhir.leedssth.nhs.uk//Id/specimenId |
value : ROA-69050-MTH-RR12764 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 445295009 |
display : Blood specimen with EDTA |
subject |
reference : Patient/Patient-PheobeSmithamMother-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307246 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : Phletobomist-Lois Lane |
collected : 2023-09-17 |
request |
reference : ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example |
{ "resourceType": "Specimen", "id": "Specimen-PheobeSmithamMother-Example", "identifier": [ { "system": "https://fhir.leedssth.nhs.uk//Id/specimenId", "value": "ROA-69050-MTH-RR12764" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "445295009", "display": "Blood specimen with EDTA" } ] }, "subject": { "reference": "Patient/Patient-PheobeSmithamMother-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307246" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "Phletobomist-Lois Lane" }, "collectedDateTime": "2023-09-17" }, "request": [ { "reference": "ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-PheobeSmithamMother-Example" /> <identifier> <system value="https://fhir.leedssth.nhs.uk//Id/specimenId" /> <value value="ROA-69050-MTH-RR12764" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="445295009" /> <display value="Blood specimen with EDTA" /> </coding> </type> <subject> <reference value="Patient/Patient-PheobeSmithamMother-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307246" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-WGSTestOrderForm-TrioTestingProband-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="Phletobomist-Lois Lane" /> </collector> <collectedDateTime value="2023-09-17" /> </collection> </Specimen>
Specimen-RyanneBoulderPartnerSaliva-Example
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-RyanneBoulderPartnerSaliva-Example |
identifier |
system : https://fhir.kingstonhospital.nhs.uk//Id/specimenId |
value : ROA-69050-FTH-RWT13521 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 119342007 |
display : Saliva specimen |
subject |
reference : Patient/Patient-RyanneBoulderPartner-Example |
container |
description : Container:ROA-69050-FTH-RWT13521 contains Saliva for Father |
request |
reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example |
{ "resourceType": "Specimen", "id": "Specimen-RyanneBoulderPartnerSaliva-Example", "identifier": [ { "system": "https://fhir.kingstonhospital.nhs.uk//Id/specimenId", "value": "ROA-69050-FTH-RWT13521" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "119342007", "display": "Saliva specimen" } ] }, "subject": { "reference": "Patient/Patient-RyanneBoulderPartner-Example" }, "container": [ { "description": "Container:ROA-69050-FTH-RWT13521 contains Saliva for Father" } ], "request": [ { "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-RyanneBoulderPartnerSaliva-Example" /> <identifier> <system value="https://fhir.kingstonhospital.nhs.uk//Id/specimenId" /> <value value="ROA-69050-FTH-RWT13521" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="119342007" /> <display value="Saliva specimen" /> </coding> </type> <subject> <reference value="Patient/Patient-RyanneBoulderPartner-Example" /> </subject> <request> <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" /> </request> <container> <description value="Container:ROA-69050-FTH-RWT13521 contains Saliva for Father" /> </container> </Specimen>
Specimen-RyanneBoulderSaliva-Example
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-RyanneBoulderSaliva-Example |
identifier |
system : https://fhir.kingstonhospital.nhs.uk//Id/specimenId |
value : ROA-69050-MTH-RWT13521 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 119342007 |
display : Saliva specimen |
subject |
reference : Patient/Patient-RyanneBoulder-Example |
container |
description : Container:ROA-69050-MTH-RWT13521 contains Saliva for Mother |
request |
reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example |
{ "resourceType": "Specimen", "id": "Specimen-RyanneBoulderSaliva-Example", "identifier": [ { "system": "https://fhir.kingstonhospital.nhs.uk//Id/specimenId", "value": "ROA-69050-MTH-RWT13521" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "119342007", "display": "Saliva specimen" } ] }, "subject": { "reference": "Patient/Patient-RyanneBoulder-Example" }, "container": [ { "description": "Container:ROA-69050-MTH-RWT13521 contains Saliva for Mother" } ], "request": [ { "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-RyanneBoulderSaliva-Example" /> <identifier> <system value="https://fhir.kingstonhospital.nhs.uk//Id/specimenId" /> <value value="ROA-69050-MTH-RWT13521" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="119342007" /> <display value="Saliva specimen" /> </coding> </type> <subject> <reference value="Patient/Patient-RyanneBoulder-Example" /> </subject> <request> <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-FetalScenario-Example" /> </request> <container> <description value="Container:ROA-69050-MTH-RWT13521 contains Saliva for Mother" /> </container> </Specimen>
Specimen-CancerSolidTumor-Example
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-CancerSolidTumor-Example |
identifier |
system : https://fhir.add.nhs.uk/Id/specimenId |
value : RA257630 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 364611000000101 |
display : Tissue resection sample |
subject |
reference : Patient/Patient-ZelmaHadjkiss-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9449307555 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : ClinicalScientist-John Taylor |
collected : 2023-09-09T11:00:00Z |
bodySite |
extension |
url : https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference |
value |
reference : BodyStructure/BodyStructure-BodySiteLocationLungs-Example |
condition |
coding |
system : https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState |
code : fresh-unfixed |
display : Fresh Unfixed |
request |
reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example |
{ "resourceType": "Specimen", "id": "Specimen-CancerSolidTumor-Example", "identifier": [ { "system": "https://fhir.add.nhs.uk/Id/specimenId", "value": "RA257630" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "364611000000101", "display": "Tissue resection sample" } ] }, "subject": { "reference": "Patient/Patient-ZelmaHadjkiss-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9449307555" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "ClinicalScientist-John Taylor" }, "collectedDateTime": "2023-09-09T11:00:00Z", "bodySite": { "extension": [ { "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference", "valueReference": { "reference": "BodyStructure/BodyStructure-BodySiteLocationLungs-Example" } } ] } }, "condition": [ { "coding": [ { "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState", "code": "fresh-unfixed", "display": "Fresh Unfixed" } ] } ], "request": [ { "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-CancerSolidTumor-Example" /> <identifier> <system value="https://fhir.add.nhs.uk/Id/specimenId" /> <value value="RA257630" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="364611000000101" /> <display value="Tissue resection sample" /> </coding> </type> <subject> <reference value="Patient/Patient-ZelmaHadjkiss-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9449307555" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-CancerSolidTumor-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="ClinicalScientist-John Taylor" /> </collector> <collectedDateTime value="2023-09-09T11:00:00Z" /> <bodySite> <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference"> <valueReference> <reference value="BodyStructure/BodyStructure-BodySiteLocationLungs-Example" /> </valueReference> </extension> </bodySite> </collection> <condition> <coding> <system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState" /> <code value="fresh-unfixed" /> <display value="Fresh Unfixed" /> </coding> </condition> </Specimen>
Specimen-TissueResection-Example
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-TissueResection-Example |
identifier |
system : https://fhir.add.nhs.uk/Id/specimenId |
value : 699F01231423 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 364611000000101 |
display : Tissue resection sample |
subject |
reference : Patient/Patient-KayBurbridge-Example |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 8449303541 |
collection |
collector |
identifier |
system : https://fhir.nhs.uk/Id/sds-user-id |
value : 9999999998 |
display : ClinicalScientist-Anna Lane |
collected : 2023-11-04T15:00:00Z |
bodySite |
extension |
url : https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference |
value |
reference : BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example |
condition |
coding |
system : https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState |
code : fresh-unfixed |
display : Fresh Unfixed |
request |
reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example |
{ "resourceType": "Specimen", "id": "Specimen-TissueResection-Example", "identifier": [ { "system": "https://fhir.add.nhs.uk/Id/specimenId", "value": "699F01231423" } ], "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "364611000000101", "display": "Tissue resection sample" } ] }, "subject": { "reference": "Patient/Patient-KayBurbridge-Example", "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "8449303541" } }, "collection": { "collector": { "identifier": { "system": "https://fhir.nhs.uk/Id/sds-user-id", "value": "9999999998" }, "display": "ClinicalScientist-Anna Lane" }, "collectedDateTime": "2023-11-04T15:00:00Z", "bodySite": { "extension": [ { "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference", "valueReference": { "reference": "BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example" } } ] } }, "condition": [ { "coding": [ { "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState", "code": "fresh-unfixed", "display": "Fresh Unfixed" } ] } ], "request": [ { "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example" } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-TissueResection-Example" /> <identifier> <system value="https://fhir.add.nhs.uk/Id/specimenId" /> <value value="699F01231423" /> </identifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="364611000000101" /> <display value="Tissue resection sample" /> </coding> </type> <subject> <reference value="Patient/Patient-KayBurbridge-Example" /> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="8449303541" /> </identifier> </subject> <request> <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-OutOfCountry-Example" /> </request> <collection> <collector> <identifier> <system value="https://fhir.nhs.uk/Id/sds-user-id" /> <value value="9999999998" /> </identifier> <display value="ClinicalScientist-Anna Lane" /> </collector> <collectedDateTime value="2023-11-04T15:00:00Z" /> <bodySite> <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BodySiteReference"> <valueReference> <reference value="BodyStructure/BodyStructure-SpecimenBodySiteLocation-Example" /> </valueReference> </extension> </bodySite> </collection> <condition> <coding> <system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-BiopsyState" /> <code value="fresh-unfixed" /> <display value="Fresh Unfixed" /> </coding> </condition> </Specimen>
Specimen-MichealJonesBlood-Minimal
Example of a Specimen resource with the minimal information populated.
Specimen |
id : Specimen-MichaelJonesBlood-Example |
accessionIdentifier |
system : https://www.christie.nhs.uk/path |
value : Spec123456 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 87612001 |
display : Blood (substance) |
subject |
identifier |
system : https://fhir.nhs.uk/Id/nhs-number |
value : 9999999999 |
request |
identifier |
system : https://www.christie.nhs.uk/ehr |
value : LabOrder123456 |
collection |
collected : 2022-07-11T09:00:00Z |
quantity |
system : http://unitsofmeasure.org |
code : mL |
value : 2.5 |
{ "resourceType": "Specimen", "id": "Specimen-MichaelJonesBlood-Example", "accessionIdentifier": { "system": "https://www.christie.nhs.uk/path", "value": "Spec123456" }, "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "87612001", "display": "Blood (substance)" } ] }, "subject": { "identifier": { "system": "https://fhir.nhs.uk/Id/nhs-number", "value": "9999999999" } }, "request": [ { "identifier": { "system": "https://www.christie.nhs.uk/ehr", "value": "LabOrder123456" } } ], "collection": { "collectedDateTime": "2022-07-11T09:00:00Z", "quantity": { "system": "http://unitsofmeasure.org", "code": "mL", "value": 2.5 } } }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-MichaelJonesBlood-Example" /> <accessionIdentifier> <system value="https://www.christie.nhs.uk/path" /> <value value="Spec123456" /> </accessionIdentifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="87612001" /> <display value="Blood (substance)" /> </coding> </type> <subject> <identifier> <system value="https://fhir.nhs.uk/Id/nhs-number" /> <value value="9999999999" /> </identifier> </subject> <request> <identifier> <system value="https://www.christie.nhs.uk/ehr" /> <value value="LabOrder123456" /> </identifier> </request> <collection> <collectedDateTime value="2022-07-11T09:00:00Z" /> <quantity> <value value="2.5" /> <system value="http://unitsofmeasure.org" /> <code value="mL" /> </quantity> </collection> </Specimen>
Specimen-MichaelJonesBloodWithCollectionDetails-Example
Example of a specimen resource with additional collection information.
Specimen |
id : Specimen-MichaelJonesBloodWithCollectionDetails-Example |
identifier |
system : https://www.christie.nhs.uk/path |
value : Spec123456 |
accessionIdentifier |
system : https://www.christie.nhs.uk/path |
value : Spec123456 |
status : available |
type |
coding |
system : http://snomed.info/sct |
code : 87612001 |
display : Blood (substance) |
subject |
reference : Patient?identifier=https://fhir.nhs.uk/Id/nhs-number|9999999999 |
receivedTime : 2022-07-13T09:00:00Z |
request |
reference : ServiceRequest?identifier=https://www.christie.nhs.uk/ehr|LabOrder123456 |
collection |
collector |
reference : Practitioner?identifier=https://fhir.nhs.uk/Id/sds-user-id|999999 |
collected : 2022-07-11T09:00:00Z |
quantity |
system : http://unitsofmeasure.org |
code : mL |
value : 2.5 |
method |
coding |
system : http://snomed.info/sct |
code : 129300006 |
display : Puncture - action |
bodySite |
coding |
system : http://snomed.info/sct |
code : 14975008 |
display : Forearm structure (body structure) |
container |
identifier |
use : official |
type |
coding |
system : http://terminology.hl7.org/CodeSystem/v2-0203 |
code : ACSN |
display : Accession ID |
system : https://www.christie.nhs.uk/path |
value : ASCN123456 |
assigner |
reference : Organization?identifier=https://fhir.nhs.uk/Id/ods-organization-code|RBV |
type |
coding |
system : http://snomed.info/sct |
code : 706067003 |
display : Blood collection/transfer device (physical object) |
specimenQuantity |
system : http://unitsofmeasure.org |
code : mL |
value : 2.5 |
condition |
coding |
system : http://terminology.hl7.org/CodeSystem/v2-0493 |
code : SNR |
display : Sample not received |
{ "resourceType": "Specimen", "id": "Specimen-MichaelJonesBloodWithCollectionDetails-Example", "identifier": [ { "system": "https://www.christie.nhs.uk/path", "value": "Spec123456" } ], "accessionIdentifier": { "system": "https://www.christie.nhs.uk/path", "value": "Spec123456" }, "status": "available", "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "87612001", "display": "Blood (substance)" } ] }, "subject": { "reference": "Patient?identifier=https://fhir.nhs.uk/Id/nhs-number|9999999999" }, "receivedTime": "2022-07-13T09:00:00Z", "request": [ { "reference": "ServiceRequest?identifier=https://www.christie.nhs.uk/ehr|LabOrder123456" } ], "collection": { "collector": { "reference": "Practitioner?identifier=https://fhir.nhs.uk/Id/sds-user-id|999999" }, "collectedDateTime": "2022-07-11T09:00:00Z", "quantity": { "system": "http://unitsofmeasure.org", "code": "mL", "value": 2.5 }, "method": { "coding": [ { "system": "http://snomed.info/sct", "code": "129300006", "display": "Puncture - action" } ] }, "bodySite": { "coding": [ { "system": "http://snomed.info/sct", "code": "14975008", "display": "Forearm structure (body structure)" } ] } }, "container": [ { "identifier": [ { "use": "official", "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "ACSN", "display": "Accession ID" } ] }, "system": "https://www.christie.nhs.uk/path", "value": "ASCN123456", "assigner": { "reference": "Organization?identifier=https://fhir.nhs.uk/Id/ods-organization-code|RBV" } } ], "type": { "coding": [ { "system": "http://snomed.info/sct", "code": "706067003", "display": "Blood collection/transfer device (physical object)" } ] }, "specimenQuantity": { "system": "http://unitsofmeasure.org", "code": "mL", "value": 2.5 } } ], "condition": [ { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0493", "code": "SNR", "display": "Sample not received" } ] } ] }
<Specimen xmlns="http://hl7.org/fhir"> <id value="Specimen-MichaelJonesBloodWithCollectionDetails-Example" /> <identifier> <system value="https://www.christie.nhs.uk/path" /> <value value="Spec123456" /> </identifier> <accessionIdentifier> <system value="https://www.christie.nhs.uk/path" /> <value value="Spec123456" /> </accessionIdentifier> <status value="available" /> <type> <coding> <system value="http://snomed.info/sct" /> <code value="87612001" /> <display value="Blood (substance)" /> </coding> </type> <subject> <reference value="Patient?identifier=https://fhir.nhs.uk/Id/nhs-number|9999999999" /> </subject> <receivedTime value="2022-07-13T09:00:00Z" /> <request> <reference value="ServiceRequest?identifier=https://www.christie.nhs.uk/ehr|LabOrder123456" /> </request> <collection> <collector> <reference value="Practitioner?identifier=https://fhir.nhs.uk/Id/sds-user-id|999999" /> </collector> <collectedDateTime value="2022-07-11T09:00:00Z" /> <quantity> <value value="2.5" /> <system value="http://unitsofmeasure.org" /> <code value="mL" /> </quantity> <method> <coding> <system value="http://snomed.info/sct" /> <code value="129300006" /> <display value="Puncture - action" /> </coding> </method> <bodySite> <coding> <system value="http://snomed.info/sct" /> <code value="14975008" /> <display value="Forearm structure (body structure)" /> </coding> </bodySite> </collection> <container> <identifier> <use value="official" /> <type> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0203" /> <code value="ACSN" /> <display value="Accession ID" /> </coding> </type> <system value="https://www.christie.nhs.uk/path" /> <value value="ASCN123456" /> <assigner> <reference value="Organization?identifier=https://fhir.nhs.uk/Id/ods-organization-code|RBV" /> </assigner> </identifier> <type> <coding> <system value="http://snomed.info/sct" /> <code value="706067003" /> <display value="Blood collection/transfer device (physical object)" /> </coding> </type> <specimenQuantity> <value value="2.5" /> <system value="http://unitsofmeasure.org" /> <code value="mL" /> </specimenQuantity> </container> <condition> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0493" /> <code value="SNR" /> <display value="Sample not received" /> </coding> </condition> </Specimen>