XML View
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="genomics-finalsample" />
<url value="https://fhir.nhs.uk/ConceptMap/genomics-finalsample" />
<version value="0.0.1" />
<name value="GenomicsFinalSample" />
<title value="Genomics Final Sample" />
<status value="draft" />
<date value="2024-10-01T18:00:00.000Z" />
<publisher value="NHS England" />
<contact>
<name value="NHS England" />
<telecom>
<system value="email" />
<value value="interoperabilityteam@nhs.net" />
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
<group>
<source value="https://future.nhs.uk/NHSgenomics/view?objectId=222250117" />
<target value="http://snomed.info/sct" />
<element>
<code value="DNA" />
<display value="DNA" />
<target>
<code value="258566005" />
<display value="Deoxyribonucleic acid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="RNA" />
<display value="RNA" />
<target>
<code value="441673008" />
<display value="Ribonucleic acid specimen (specimen)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cDNA" />
<display value="cDNA" />
<target>
<code value="70016006" />
<display value="Complementary deoxyribonucleic acid (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="ctDNA" />
<display value="ctDNA" />
<target>
<equivalence value="unmatched" />
<comment value="No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA" />
</target>
</element>
<element>
<code value="cfDNA" />
<display value="cfDNA" />
<target>
<code value="70016006" />
<display value="Cell free deoxyribonucleic acid (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="cell-suspension" />
<display value="Cell Suspension" />
<target>
<code value="702451000" />
<display value="Cultured cells (substance)" />
<equivalence value="equivalent" />
</target>
</element>
<element>
<code value="fixed-tissue-on-slide" />
<display value="Fixed Tissue on Slide" />
<target>
<code value="787150001" />
<display value="Stained slide of tissue section (specimen)" />
<equivalence value="narrower" />
<comment value="An appropriate concept should be selected to indicate either stained or unstained." />
</target>
<target>
<code value="787149001" />
<display value="Unstained slide of tissue section (specimen)" />
<equivalence value="narrower" />
<comment value="An appropriate concept should be selected to indicate either stained or unstained." />
</target>
</element>
<element>
<code value="other" />
<display value="Other" />
<target>
<code value="123038009" />
<display value="Specimen (specimen)" />
<equivalence value="wider" />
<comment value="Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found." />
</target>
</element>
</group>
</ConceptMap>
JSON View
{
"resourceType": "ConceptMap",
"id": "genomics-finalsample",
"url": "https://fhir.nhs.uk/ConceptMap/genomics-finalsample",
"version": "0.0.1",
"name": "GenomicsFinalSample",
"title": "Genomics Final Sample",
"status": "draft",
"date": "2024-10-01T18:00:00.000Z",
"publisher": "NHS England",
"contact": [
{
"name": "NHS England",
"telecom": [
{
"system": "email",
"value": "interoperabilityteam@nhs.net"
}
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording of concepts for the categories of final sample types.This is intended for the element Specimen.type",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
"group": [
{
"source": "https://future.nhs.uk/NHSgenomics/view?objectId=222250117",
"target": "http://snomed.info/sct",
"element": [
{
"code": "DNA",
"display": "DNA",
"target": [
{
"code": "258566005",
"display": "Deoxyribonucleic acid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "RNA",
"display": "RNA",
"target": [
{
"code": "441673008",
"display": "Ribonucleic acid specimen (specimen)",
"equivalence": "equivalent"
}
]
},
{
"code": "cDNA",
"display": "cDNA",
"target": [
{
"code": "70016006",
"display": "Complementary deoxyribonucleic acid (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "ctDNA",
"display": "ctDNA",
"target": [
{
"equivalence": "unmatched",
"comment": "No suitable SNOMED CT code is found for this concept at this time. Thus, this concept should be recored under Specimen.type as free text as Circulating Tumour DNA"
}
]
},
{
"code": "cfDNA",
"display": "cfDNA",
"target": [
{
"code": "70016006",
"display": "Cell free deoxyribonucleic acid (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "cell-suspension",
"display": "Cell Suspension",
"target": [
{
"code": "702451000",
"display": "Cultured cells (substance)",
"equivalence": "equivalent"
}
]
},
{
"code": "fixed-tissue-on-slide",
"display": "Fixed Tissue on Slide",
"target": [
{
"code": "787150001",
"display": "Stained slide of tissue section (specimen)",
"equivalence": "narrower",
"comment": "An appropriate concept should be selected to indicate either stained or unstained."
},
{
"code": "787149001",
"display": "Unstained slide of tissue section (specimen)",
"equivalence": "narrower",
"comment": "An appropriate concept should be selected to indicate either stained or unstained."
}
]
},
{
"code": "other",
"display": "Other",
"target": [
{
"code": "123038009",
"display": "Specimen (specimen)",
"equivalence": "wider",
"comment": "Any other suitable Specimen types not listed on this code. This should be provided by free text if no suitable SNOMED CT is found."
}
]
}
]
}
]
}
