FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

CodeSystem Task Code Genomics

Usage
A set of codes use to identify the type of task for Genomic Order Management

HTML View

This code system https://fhir.nhs.uk/CodeSystem/task-code-genomics defines the following codes:

Code	Display
process-genomic-test-request	Process Genomic Test Request
request-sample-alignment	Request & Sample Alignment
sample-preparation	Sample Preparation
sample-processing	Sample Processing
genetic-genomic-data-processing	Genetic/Genomic Data Processing
interpretation	Interpretation
produce-interim-report	Produce Interim Report
genomic-mdt	Genomic MDT
produce-final-report	Produce Final Report
distribute-report	Distribute Report

Table View

CodeSystem.id[0]	task-code-genomics
CodeSystem.url[0]	https://fhir.nhs.uk/CodeSystem/task-code-genomics
CodeSystem.version[0]	0.3.0
CodeSystem.name[0]	TaskCodeGenomics
CodeSystem.title[0]	Task Code Genomics
CodeSystem.status[0]	draft
CodeSystem.date[0]	2024-02-28T15:33:00+00:00
CodeSystem.publisher[0]	NHS England
CodeSystem.contact[0].name[0]	NHS England
CodeSystem.contact[0].telecom[0].system[0]	email
CodeSystem.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
CodeSystem.contact[0].telecom[0].use[0]	work
CodeSystem.description[0]	A set of codes use to identify the type of task for Genomic Order Management
CodeSystem.copyright[0]	Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]	True
CodeSystem.content[0]	complete
CodeSystem.concept[0].code[0]	process-genomic-test-request
CodeSystem.concept[0].display[0]	Process Genomic Test Request
CodeSystem.concept[0].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[0].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[0].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[0].designation[0].value[0]	50.00
CodeSystem.concept[1].code[0]	request-sample-alignment
CodeSystem.concept[1].display[0]	Request & Sample Alignment
CodeSystem.concept[1].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[1].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[1].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[1].designation[0].value[0]	100.00
CodeSystem.concept[2].code[0]	sample-preparation
CodeSystem.concept[2].display[0]	Sample Preparation
CodeSystem.concept[2].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[2].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[2].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[2].designation[0].value[0]	150.00
CodeSystem.concept[3].code[0]	sample-processing
CodeSystem.concept[3].display[0]	Sample Processing
CodeSystem.concept[3].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[3].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[3].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[3].designation[0].value[0]	200.00
CodeSystem.concept[4].code[0]	genetic-genomic-data-processing
CodeSystem.concept[4].display[0]	Genetic/Genomic Data Processing
CodeSystem.concept[4].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[4].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[4].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[4].designation[0].value[0]	250.00
CodeSystem.concept[5].code[0]	interpretation
CodeSystem.concept[5].display[0]	Interpretation
CodeSystem.concept[5].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[5].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[5].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[5].designation[0].value[0]	300.00
CodeSystem.concept[6].code[0]	produce-interim-report
CodeSystem.concept[6].display[0]	Produce Interim Report
CodeSystem.concept[6].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[6].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[6].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[6].designation[0].value[0]	350.00
CodeSystem.concept[7].code[0]	genomic-mdt
CodeSystem.concept[7].display[0]	Genomic MDT
CodeSystem.concept[7].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[7].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[7].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[7].designation[0].value[0]	400.00
CodeSystem.concept[8].code[0]	produce-final-report
CodeSystem.concept[8].display[0]	Produce Final Report
CodeSystem.concept[8].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[8].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[8].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[8].designation[0].value[0]	450.00
CodeSystem.concept[9].code[0]	distribute-report
CodeSystem.concept[9].display[0]	Distribute Report
CodeSystem.concept[9].designation[0].use[0].system[0]	http://snomed.info/sct
CodeSystem.concept[9].designation[0].use[0].code[0]	900000000000013009
CodeSystem.concept[9].designation[0].use[0].display[0]	Synonym
CodeSystem.concept[9].designation[0].value[0]	500.00

XML View

<CodeSystem xmlns="http://hl7.org/fhir">
    <id value="task-code-genomics" />
    <url value="https://fhir.nhs.uk/CodeSystem/task-code-genomics" />
    <version value="0.3.0" />
    <name value="TaskCodeGenomics" />
    <title value="Task Code Genomics" />
    <status value="draft" />
    <date value="2024-02-28T15:33:00+00:00" />
    <publisher value="NHS England" />
    <contact>
        <name value="NHS England" />
        <telecom>
            <system value="email" />
            <value value="interoperabilityteam@nhs.net" />
            <use value="work" />
        </telecom>
    </contact>
    <description value="A set of codes use to identify the type of task for Genomic Order Management" />
    <copyright value="Copyright &#169; 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \&quot;License\&quot;); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \&quot;AS IS\&quot; BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7&#174; FHIR&#174; standard Copyright &#169; 2011+ HL7 The HL7&#174; FHIR&#174; standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html." />
    <caseSensitive value="true" />
    <content value="complete" />
    <concept>
        <code value="process-genomic-test-request" />
        <display value="Process Genomic Test Request" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="50.00" />
        </designation>
    </concept>
    <concept>
        <code value="request-sample-alignment" />
        <display value="Request &amp; Sample Alignment" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="100.00" />
        </designation>
    </concept>
    <concept>
        <code value="sample-preparation" />
        <display value="Sample Preparation" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="150.00" />
        </designation>
    </concept>
    <concept>
        <code value="sample-processing" />
        <display value="Sample Processing" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="200.00" />
        </designation>
    </concept>
    <concept>
        <code value="genetic-genomic-data-processing" />
        <display value="Genetic/Genomic Data Processing" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="250.00" />
        </designation>
    </concept>
    <concept>
        <code value="interpretation" />
        <display value="Interpretation" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="300.00" />
        </designation>
    </concept>
    <concept>
        <code value="produce-interim-report" />
        <display value="Produce Interim Report" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="350.00" />
        </designation>
    </concept>
    <concept>
        <code value="genomic-mdt" />
        <display value="Genomic MDT" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="400.00" />
        </designation>
    </concept>
    <concept>
        <code value="produce-final-report" />
        <display value="Produce Final Report" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="450.00" />
        </designation>
    </concept>
    <concept>
        <code value="distribute-report" />
        <display value="Distribute Report" />
        <designation>
            <use>
                <system value="http://snomed.info/sct" />
                <code value="900000000000013009" />
                <display value="Synonym" />
            </use>
            <value value="500.00" />
        </designation>
    </concept>
</CodeSystem>

JSON View

{
    "resourceType": "CodeSystem",
    "id": "task-code-genomics",
    "url": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
    "version": "0.3.0",
    "name": "TaskCodeGenomics",
    "title": "Task Code Genomics",
    "status": "draft",
    "date": "2024-02-28T15:33:00+00:00",
    "publisher": "NHS England",
    "contact":  [
        {
            "name": "NHS England",
            "telecom":  [
                {
                    "system": "email",
                    "value": "interoperabilityteam@nhs.net",
                    "use": "work"
                }
            ]
        }
    ],
    "description": "A set of codes use to identify the type of task for Genomic Order Management",
    "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
    "caseSensitive": true,
    "content": "complete",
    "concept":  [
        {
            "code": "process-genomic-test-request",
            "display": "Process Genomic Test Request",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "50.00"
                }
            ]
        },
        {
            "code": "request-sample-alignment",
            "display": "Request & Sample Alignment",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "100.00"
                }
            ]
        },
        {
            "code": "sample-preparation",
            "display": "Sample Preparation",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "150.00"
                }
            ]
        },
        {
            "code": "sample-processing",
            "display": "Sample Processing",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "200.00"
                }
            ]
        },
        {
            "code": "genetic-genomic-data-processing",
            "display": "Genetic/Genomic Data Processing",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "250.00"
                }
            ]
        },
        {
            "code": "interpretation",
            "display": "Interpretation",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "300.00"
                }
            ]
        },
        {
            "code": "produce-interim-report",
            "display": "Produce Interim Report",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "350.00"
                }
            ]
        },
        {
            "code": "genomic-mdt",
            "display": "Genomic MDT",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "400.00"
                }
            ]
        },
        {
            "code": "produce-final-report",
            "display": "Produce Final Report",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "450.00"
                }
            ]
        },
        {
            "code": "distribute-report",
            "display": "Distribute Report",
            "designation":  [
                {
                    "use": {
                        "system": "http://snomed.info/sct",
                        "code": "900000000000013009",
                        "display": "Synonym"
                    },
                    "value": "500.00"
                }
            ]
        }
    ]
}

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CodeSystem Task Code Genomics

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