FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example

Example of a Task capturing well ids for coordinating sample preparation.

Task

id : Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example

status : requested

intent : order

priority : routine

code

coding

system : https://fhir.nhs.uk/CodeSystem/task-code-genomics

code : sample-preparation

display : Sample Preparation

focus

reference : ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example

for

reference : Patient/Patient-TimMclullichs-Example

identifier

system : https://fhir.nhs.uk/Id/nhs-number

value : 8449303452

authoredOn : 2023-11-02T15:43:00Z

requester

reference : PractitionerRole/PractitionerRole-OscarShields-Example

owner

identifier

system : https://fhir.nhs.uk/Id/ods-organization-code

value : RQ3

display : BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST

note

text : Test critieria met and sample to be used from storage

input

type

coding

system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics

code : Specimen

display : Specimen

value

reference : Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example

input

type

coding

system : https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics

code : WellId

display : Well Identification Number

value

system : https://www.guysandstthomas.nhs.uk/WellId

value : RJ1-WID-9449307555

assigner

identifier

system : https://fhir.nhs.uk/Id/ods-organization-code

value : RJ1

{
    "resourceType": "Task",
    "id": "Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example",
    "status": "requested",
    "intent": "order",
    "priority": "routine",
    "code": {
        "coding":  [
            {
                "system": "https://fhir.nhs.uk/CodeSystem/task-code-genomics",
                "code": "sample-preparation",
                "display": "Sample Preparation"
            }
        ]
    },
    "focus": {
        "reference": "ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example"
    },
    "for": {
        "reference": "Patient/Patient-TimMclullichs-Example",
        "identifier": {
            "system": "https://fhir.nhs.uk/Id/nhs-number",
            "value": "8449303452"
        }
    },
    "authoredOn": "2023-11-02T15:43:00Z",
    "requester": {
        "reference": "PractitionerRole/PractitionerRole-OscarShields-Example"
    },
    "owner": {
        "identifier": {
            "system": "https://fhir.nhs.uk/Id/ods-organization-code",
            "value": "RQ3"
        },
        "display": "BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST"
    },
    "note":  [
        {
            "text": "Test critieria met and sample to be used from storage"
        }
    ],
    "input":  [
        {
            "type": {
                "coding":  [
                    {
                        "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics",
                        "code": "Specimen",
                        "display": "Specimen"
                    }
                ]
            },
            "valueReference": {
                "reference": "Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example"
            }
        },
        {
            "type": {
                "coding":  [
                    {
                        "system": "https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics",
                        "code": "WellId",
                        "display": "Well Identification Number"
                    }
                ]
            },
            "valueIdentifier": {
                "system": "https://www.guysandstthomas.nhs.uk/WellId",
                "value": "RJ1-WID-9449307555",
                "assigner": {
                    "identifier": {
                        "system": "https://fhir.nhs.uk/Id/ods-organization-code",
                        "value": "RJ1"
                    }
                }
            }
        }
    ]
}

<Task xmlns="http://hl7.org/fhir">
    <id value="Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example" />
    <status value="requested" />
    <intent value="order" />
    <priority value="routine" />
    <code>
        <coding>
            <system value="https://fhir.nhs.uk/CodeSystem/task-code-genomics" />
            <code value="sample-preparation" />
            <display value="Sample Preparation" />
        </coding>
    </code>
    <focus>
        <reference value="ServiceRequest/ServiceRequest-NonWGSTestOrderForm-UsingStoredSample-Example" />
    </focus>
    <for>
        <reference value="Patient/Patient-TimMclullichs-Example" />
        <identifier>
            <system value="https://fhir.nhs.uk/Id/nhs-number" />
            <value value="8449303452" />
        </identifier>
    </for>
    <authoredOn value="2023-11-02T15:43:00Z" />
    <requester>
        <reference value="PractitionerRole/PractitionerRole-OscarShields-Example" />
    </requester>
    <owner>
        <identifier>
            <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
            <value value="RQ3" />
        </identifier>
        <display value="BIRMINGHAM WOMEN&#39;S AND CHILDREN&#39;S NHS FOUNDATION TRUST" />
    </owner>
    <note>
        <text value="Test critieria met and sample to be used from storage" />
    </note>
    <input>
        <type>
            <coding>
                <system value="https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics" />
                <code value="Specimen" />
                <display value="Specimen" />
            </coding>
        </type>
        <valueReference>
            <reference value="Specimen/Specimen-BloodEDTA-WithCollectionDetails-Example" />
        </valueReference>
    </input>
    <input>
        <type>
            <coding>
                <system value="https://fhir.nhs.uk/CodeSystem/AdditionalInfoTypeGenomics" />
                <code value="WellId" />
                <display value="Well Identification Number" />
            </coding>
        </type>
        <valueIdentifier>
            <system value="https://www.guysandstthomas.nhs.uk/WellId" />
            <value value="RJ1-WID-9449307555" />
            <assigner>
                <identifier>
                    <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
                    <value value="RJ1" />
                </identifier>
            </assigner>
        </valueIdentifier>
    </input>
</Task>

Notice

Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example

Propose a change to Task-NonWGSTestOrderFormRequested-UsingStoredSample-Example