PLCM activity

Purpose

For PLCM activity submissions. This section is pending review, supporting PLCM activity reporting is not expected as part of the Genomic Order Management Alpha.

Notes

Derived from existing fields used for clinical/operational purposes in the test order/response.

Mapping

Source Data item Target FHIR Element HL7v2.5.1 Mapping Description
PLCM activity - NGIS referral identifier ServiceRequest.identifier ORC-3 NGIS referral identifier
PLCM activity - Financial month Derived from ServiceRequest.authoredOn Derived from ORC-9 The month in which the PLCM activity occurred.
PLCM activity - Financial year Derived from ServiceRequest.authoredOn Derived from ORC-9 The financial year in which the PLCM activity occurred.
PLCM activity - Date and time dataset created Derived from DiagnosticReport.effectiveDateTime based on ServiceRequest Derived from OBR-7 in the ORU response message for the activity based on the OML request The date and time a file was created prior to submission to Data Landing Portal (DLP).
PLCM activity - Activity start date and time Derived from Task.executionPeriod.start for activity based on ServiceRequest Derived from TQ1-7 in the ORU response message for the activity based on the OML request The date and time of the defined PLCM activity start date for the relevant activity.
PLCM activity - Activity end date and time Derived from Task.executionPeriod.end for activity based on ServiceRequest Derived from TQ1-8 in the ORU response message for the activity based on the OML request The date and time of the defined PLCM activity end date for the relevant activity.
PLCM activity - Patient age at activity date Derived from the difference between Patient.birthDate and Task.executionPeriod.start for the relevant activity Derived from the difference between PID-7 and TQ1-7 for the relevant activity Age of the patient at the date a PLCM activity is undertaken.
PLCM activity - ODS code of organisation submitting to PLCM Task.owner if pulled directly from broker system OBR-32.7 if sourced from principle results interpreter ODS code of the organisation submitting the PLCM data specification.
PLCM activity - ODS code of organisation commissioned to deliver requested test ServiceRequest.performer if pulled directly from broker system Potentially OBR-32.7 in OML message ODS code of the organisation commissioned by NHS England to deliver the service.
PLCM activity - ODS code of organisation delivering requested test Task.owner Potentially OBX-13 in ORU message ODS code of the organisation delivering the service.
PLCM activity - ODS code of the laboratory site delivering requested test Task.owner( PractitionerRole.healthcareService( HealthcareService.identifier ) ) OBX-24 in ORU message ODS code of the site on which the laboratory delivering the service is based.
PLCM activity - ODS code of commissioning region Organization.partOf N/A - not in scope for HL7v2 ODS code of the commissioning region.
PLCM activity - Commissioned service category code Derived from ServiceRequest.requester( PractitionerRole.healthcareService ) Derived from OBR-4 PLCM category code for the service commissioning the test request.
PLCM activity - Service code Derived from ServiceRequest.code Derived from OBR-4 PLCM Service code to confirm if the test request is for a specialised service.
PLCM activity - Point of delivery code Derived from ServiceRequest.code Derived from OBR-4 PLCM point of delivery code.
PLCM activity - Local point of delivery code Derived from ServiceRequest.code Derived from OBR-4 PLCM local point of delivery code.
PLCM activity - Turnaround time (calendar days) Derived from difference between ServiceRequest.authoredOn and resulting DiagnosticReport.effectiveDateTime Derived from difference between OBR-6 and OBR-7 for resulting report To be populated with the actual turnaround time for the activity expressed in calendar days.
PLCM activity - Turnaround time standard (calendar days) N/A fixed dependent on test type N/A fixed dependent on test type To be populated with the relevant turnaround time standard for the activity expressed in calendar days at TESTREPORT activity stage, else blank.
PLCM activity - Compliant with turnaround time standard (calendar days) N/A derived from fixed standard and current turnaround time N/A derived from fixed standard and current turnaround time To be populated with Y=Yes, N=No at TESTREPORT activity stage, else blank.
PLCM activity - Test method code Derived from ServiceRequest.code Derived from OBR-4 PLCM test method code.
PLCM activity - Sample plating quality control Implied though completion of SpecimenProcessing Task Implied through status recorded in ORC-25 indicating plating quality control had passed Confirmation if the sample plating has passed quality control.
PLCM activity - Sample plating quality control fail code Task.statusReason for SpecimenProcessing Task ORC-25 Sample plating, quality control, fail code.
PLCM activity - Sample volume Specimen.collection.quantity SPM-12 Sample volume in (µl).
PLCM activity - DNA concentration Observation attached to Specimen with code 13925004 and appropriate UCUM unit OBX with code 13925004 and appropriate UCUM unit DNA concentration in (ng/ul).
PLCM activity - DNA quantification Observation attached to Specimen with code 13925004 and appropriate UCUM unit OBX segment with code 13925004 and appropriate UCUM unit DNA quantification in (µg).
PLCM activity - Sample category code Derived from Specimen.type Derived from SPM-4 PLCM sample category code.
PLCM activity - Quality score for sequencing N/A Derived from DNA concentration/quantification N/A Derived from DNA concentration/quantification Quality score for sequencing.
PLCM activity - Local report identifier DiagnosticReport.identifier OBR-3 for report Identifier for the issued report
PLCM activity - Test outcome code (Many) DiagnosticReport.result( Observation.code ) OBX-3 elements for resulting report PLCM test outcome codes.