GenomicsReport
| Canonical URL | https://fhir.synapxe.sg/StructureDefinition/profile-genomicsreport |
|---|---|
| Version | 1.2.0 |
| Status | Active |
| Description | Genomics report profile constrained from DiagnosticReport. |
| GenomicsReport (DiagnosticReport) | C | DiagnosticReport | |
| id | Σ | 0..1 | id |
| meta | Σ | 0..1 | Meta |
| implicitRules | Σ ?! | 0..1 | uri |
| language | 0..1 | codeBinding | |
| text | C | 0..1 | Narrative |
| contained | C | 0..* | Resource |
| extension | C | 0..* | Extension |
| recommendedAction | C | 0..* | Extension(Reference(MedicationRecommendation)) |
| modifierExtension | Σ ?! C | 0..* | Extension |
| identifier | Σ C | 0..* | Identifier |
| basedOn | C | 1..1 | Reference(GenomicsServiceRequest) |
| status | Σ ?! | 1..1 | codeBinding |
| category | Σ | 0..0 | CodeableConcept |
| code | Σ | 1..1 | CodeableConceptBinding |
| id | 0..0 | string | |
| extension | C | 0..* | Extension |
| coding | Σ C | 1..* | Coding |
| id | 0..0 | string | |
| extension | C | 0..0 | Extension |
| system | Σ | 1..1 | uriFixed Value |
| version | Σ | 0..1 | string |
| code | Σ C | 1..1 | codeFixed Value |
| display | Σ C | 1..1 | string |
| userSelected | Σ | 0..0 | boolean |
| text | Σ | 0..0 | string |
| subject | Σ C | 1..1 | Reference(GenomicsPatient) |
| encounter | Σ C | 0..0 | Reference(Encounter) |
| effective[x] | Σ | 0..0 | |
| issued | Σ | 1..1 | instant |
| id | 0..1 | string | |
| extension | C | 0..* | Extension |
| addendumCreationDate | C | 0..1 | Extension(dateTime) |
| value | 0..1 | System.DateTime | |
| performer | Σ C | 1..2 | Reference(CareTeam | Organization | Practitioner | PractitionerRole) |
| Organization | Σ C | 0..1 | Reference(Organization) |
| Practitioner | Σ C | 0..1 | Reference(Practitioner) |
| resultsInterpreter | Σ C | 1..* | Reference(Practitioner) |
| id | 0..0 | string | |
| extension | C | 0..0 | Extension |
| reference | Σ C | 0..0 | string |
| type | Σ | 1..1 | uriBindingFixed Value |
| identifier | Σ C | 1..1 | Identifier |
| id | 0..0 | string | |
| extension | C | 0..0 | Extension |
| use | Σ ?! | 0..0 | codeBinding |
| type | Σ | 0..0 | CodeableConceptBinding |
| system | Σ | 1..1 | uri |
| value | Σ C | 1..1 | string |
| period | Σ C | 0..0 | Period |
| assigner | Σ C | 0..0 | Reference(Organization) |
| display | Σ C | 0..0 | string |
| specimen | C | 1..1 | Reference(GenomicsSpecimen) |
| result | C | 1..* | Reference(Observation) |
| molecular-biomarker | C | 0..* | Reference(MolecularBiomarker) |
| variant | C | 0..* | Reference(Variant) |
| note | 0..0 | Annotation | |
| study | C | 0..0 | Reference(GenomicStudy | ImagingStudy) |
| supportingInfo | 0..0 | BackboneElement | |
| media | Σ | 0..0 | BackboneElement |
| composition | C | 0..0 | Reference(Composition) |
| conclusion | 0..0 | markdown | |
| conclusionCode | 0..0 | CodeableConcept | |
| presentedForm | C | 0..0 | Attachment |
| DiagnosticReport | |
| Short | A Diagnostic report - a combination of request information, atomic results, images, interpretation, as well as formatted reports |
| Definition | The findings and interpretation of diagnostic tests performed on patients, groups of patients, products, substances, devices, and locations, and/or specimens derived from these. The report includes clinical context such as requesting provider information, and some mix of atomic results, images, textual and coded interpretations, and formatted representation of diagnostic reports. The report also includes non-clinical context such as batch analysis and stability reporting of products and substances. |
| Cardinality | 0..* |
| Alias | Report, Test, Result, Results, Labs, Laboratory |
| Comments | This is intended to capture a single report and is not suitable for use in displaying summary information that covers multiple reports. For example, this resource has not been designed for laboratory cumulative reporting formats nor detailed structured reports for sequencing. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.id | |
| Short | Logical id of this artifact |
| Definition | The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes. |
| Cardinality | 0..1 |
| Type | id |
| Summary | True |
| Comments | Within the context of the FHIR RESTful interactions, the resource has an id except for cases like the create and conditional update. Otherwise, the use of the resouce id depends on the given use case. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.meta | |
| Short | Metadata about the resource |
| Definition | The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource. |
| Cardinality | 0..1 |
| Type | Meta |
| Summary | True |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.implicitRules | |
| Short | A set of rules under which this content was created |
| Definition | A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc. |
| Cardinality | 0..1 |
| Type | uri |
| Modifier | True |
| Summary | True |
| Comments | Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of its narrative along with other profiles, value sets, etc. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.language | |
| Short | Language of the resource content |
| Definition | The base language in which the resource is written. |
| Cardinality | 0..1 |
| Type | code |
| Binding | IETF language tag for a human language |
| Comments | Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute). |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.text | |
| Short | Text summary of the resource, for human interpretation |
| Definition | A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety. |
| Cardinality | 0..1 |
| Type | Narrative |
| Alias | narrative, html, xhtml, display |
| Comments | Contained resources do not have a narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later. |
| Conditions | The cardinality or value of this element may be affected by these constraints: dom-6 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.contained | |
| Short | Contained, inline Resources |
| Definition | These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, nor can they have their own independent transaction scope. This is allowed to be a Parameters resource if and only if it is referenced by a resource that provides context/meaning. |
| Cardinality | 0..* |
| Type | Resource |
| Alias | inline resources, anonymous resources, contained resources |
| Comments | This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags in their meta elements, but SHALL NOT have security labels. |
| Conditions | The cardinality or value of this element may be affected by these constraints: dom-2, dom-4, dom-3, dom-5 |
| Mappings |
|
| DiagnosticReport.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..* |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.extension:recommendedAction | |
| Short | Recommended Action |
| Definition | Extension for capturing medication recommendations based on genomic findings. |
| Cardinality | 0..* |
| Type | Extension(Reference(MedicationRecommendation)) |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.modifierExtension | |
| Short | Extensions that cannot be ignored |
| Definition | May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Cardinality | 0..* |
| Type | Extension |
| Modifier | True |
| Summary | True |
| Alias | extensions, user content |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.identifier | |
| Short | Business identifier for report |
| Definition | Identifiers assigned to this report by the performer or other systems. |
| Cardinality | 0..* |
| Type | Identifier |
| Summary | True |
| Alias | ReportID, Filler ID, Placer ID |
| Requirements | Need to know what identifier to use when making queries about this report from the source laboratory, and for linking to the report outside FHIR context. |
| Comments | Usually assigned by the Information System of the diagnostic service provider (filler id). |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.basedOn | |
| Short | What was requested |
| Definition | Details concerning a service requested. |
| Cardinality | 1..1 |
| Type | Reference(GenomicsServiceRequest) |
| Alias | Request |
| Requirements | This allows tracing of authorization for the report and tracking whether proposals/recommendations were acted upon. |
| Comments | Note: Usually there is one test request for each result, however in some circumstances multiple test requests may be represented using a single test result resource. Note that there are also cases where one request leads to multiple reports. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.status | |
| Short | registered | partial | preliminary | modified | final | amended | corrected | appended | cancelled | entered-in-error | unknown |
| Definition | The status of the diagnostic report. |
| Cardinality | 1..1 |
| Type | code |
| Binding | The status of the diagnostic report. |
| Modifier | True |
| Summary | True |
| Requirements | Diagnostic services routinely issue provisional/incomplete reports, and sometimes withdraw previously released reports. |
| Comments | Note that FHIR strings SHALL NOT exceed 1,048,576 (1024*1024) characters in size |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.category | |
| Short | Service category |
| Definition | A code that classifies the clinical discipline, department or diagnostic service that created the report (e.g. cardiology, biochemistry, hematology, MRI). This is used for searching, sorting and display purposes. |
| Cardinality | 0..0 |
| Type | CodeableConcept |
| Binding | HL7 V2 table 0074 |
| Summary | True |
| Alias | Department, Sub-department, Service, Discipline |
| Comments | Multiple categories are allowed using various categorization schemes. The level of granularity is defined by the category concepts in the value set. More fine-grained filtering can be performed using the metadata and/or terminology hierarchy in DiagnosticReport.code. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code | |
| Short | Concept - reference to a terminology or just text |
| Definition | A concept that may be defined by a formal reference to a terminology or ontology or may be provided by text. |
| Cardinality | 1..1 |
| Type | CodeableConcept |
| Binding | LOINC Codes for Diagnostic Reports |
| Summary | True |
| Alias | Type |
| Comments | Not all terminology uses fit this general pattern. In some cases, models should not use CodeableConcept and use Coding directly and provide their own structure for managing text, codings, translations and the relationship between elements and pre- and post-coordination. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..0 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.code.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..* |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.coding | |
| Short | Code defined by a terminology system |
| Definition | A reference to a code defined by a terminology system. |
| Cardinality | 1..* |
| Type | Coding |
| Summary | True |
| Requirements | Allows for alternative encodings within a code system, and translations to other code systems. |
| Comments | Codes may be defined very casually in enumerations, or code lists, up to very formal definitions such as SNOMED CT - see the HL7 v3 Core Principles for more information. Ordering of codings is undefined and SHALL NOT be used to infer meaning. Generally, at most only one of the coding values will be labeled as UserSelected = true. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.coding.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..0 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.code.coding.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..0 |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.coding.system | |
| Short | Identity of the terminology system |
| Definition | The identification of the code system that defines the meaning of the symbol in the code. |
| Cardinality | 1..1 |
| Type | uri |
| Summary | True |
| Requirements | Need to be unambiguous about the source of the definition of the symbol. |
| Comments | The URI may be an OID (urn:oid:...) or a UUID (urn:uuid:...). OIDs and UUIDs SHALL be references to the HL7 OID registry. Otherwise, the URI should come from HL7's list of FHIR defined special URIs or it should be an absolute reference to some definition that establishes the system clearly and unambiguously. |
| Constraints |
|
| Fixed Value | http://loinc.org |
| Mappings |
|
| DiagnosticReport.code.coding.version | |
| Short | Version of the system - if relevant |
| Definition | The version of the code system which was used when choosing this code. Note that a well-maintained code system does not need the version reported, because the meaning of codes is consistent across versions. However this cannot consistently be assured, and when the meaning is not guaranteed to be consistent, the version SHOULD be exchanged. |
| Cardinality | 0..1 |
| Type | string |
| Summary | True |
| Comments | Where the terminology does not clearly define what string should be used to identify code system versions, the recommendation is to use the date (expressed in FHIR date format) on which that version was officially published as the version date. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.coding.code | |
| Short | Symbol in syntax defined by the system |
| Definition | A symbol in syntax defined by the system. The symbol may be a predefined code or an expression in a syntax defined by the coding system (e.g. post-coordination). |
| Cardinality | 1..1 |
| Type | code |
| Summary | True |
| Requirements | Need to refer to a particular code in the system. |
| Comments | Note that FHIR strings SHALL NOT exceed 1,048,576 (1024*1024) characters in size |
| Conditions | The cardinality or value of this element may be affected by these constraints: cod-1 |
| Constraints |
|
| Fixed Value | 51969-4 |
| Mappings |
|
| DiagnosticReport.code.coding.display | |
| Short | Representation defined by the system |
| Definition | A representation of the meaning of the code in the system, following the rules of the system. |
| Cardinality | 1..1 |
| Type | string |
| Summary | True |
| Requirements | Need to be able to carry a human-readable meaning of the code for readers that do not know the system. |
| Comments | Note that FHIR strings SHALL NOT exceed 1,048,576 (1024*1024) characters in size |
| Conditions | The cardinality or value of this element may be affected by these constraints: cod-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.coding.userSelected | |
| Short | If this coding was chosen directly by the user |
| Definition | Indicates that this coding was chosen by a user directly - e.g. off a pick list of available items (codes or displays). |
| Cardinality | 0..0 |
| Type | boolean |
| Summary | True |
| Requirements | This has been identified as a clinical safety criterium - that this exact system/code pair was chosen explicitly, rather than inferred by the system based on some rules or language processing. |
| Comments | Amongst a set of alternatives, a directly chosen code is the most appropriate starting point for new translations. There is some ambiguity about what exactly 'directly chosen' implies, and trading partner agreement may be needed to clarify the use of this element and its consequences more completely. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.code.text | |
| Short | Plain text representation of the concept |
| Definition | A human language representation of the concept as seen/selected/uttered by the user who entered the data and/or which represents the intended meaning of the user. |
| Cardinality | 0..0 |
| Type | string |
| Summary | True |
| Requirements | The codes from the terminologies do not always capture the correct meaning with all the nuances of the human using them, or sometimes there is no appropriate code at all. In these cases, the text is used to capture the full meaning of the source. |
| Comments | Very often the text is the same as a displayName of one of the codings. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.subject | |
| Short | The subject of the report - usually, but not always, the patient |
| Definition | The subject of the report. Usually, but not always, this is a patient. However, diagnostic services also perform analyses on specimens collected from a variety of other sources. |
| Cardinality | 1..1 |
| Type | Reference(GenomicsPatient) |
| Summary | True |
| Alias | Patient |
| Requirements | SHALL know the subject context. |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.encounter | |
| Short | Health care event when test ordered |
| Definition | The healthcare event (e.g. a patient and healthcare provider interaction) which this DiagnosticReport is about. |
| Cardinality | 0..0 |
| Type | Reference(Encounter) |
| Summary | True |
| Alias | Context |
| Requirements | Links the request to the Encounter context. |
| Comments | This will typically be the encounter the event occurred within, but some events may be initiated prior to or after the official completion of an encounter but still be tied to the context of the encounter (e.g. pre-admission laboratory tests). |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.effective[x] | |
| Short | Clinically relevant time/time-period for report |
| Definition | The time or time-period the observed values are related to. When the subject of the report is a patient, this is usually either the time of the procedure or of specimen collection(s), but very often the source of the date/time is not known, only the date/time itself. |
| Cardinality | 0..0 |
| Type | dateTime | Period |
| Summary | True |
| Alias | Observation time, Effective Time, Occurrence |
| Requirements | Need to know where in the patient history to file/present this report. |
| Comments | If the diagnostic procedure was performed on the patient, this is the time it was performed. If there are specimens, the diagnostically relevant time can be derived from the specimen collection times, but the specimen information is not always available, and the exact relationship between the specimens and the diagnostically relevant time is not always automatic. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.issued | |
| Short | DateTime this version was made |
| Definition | The date and time that this version of the report was made available to providers, typically after the report was reviewed and verified. |
| Cardinality | 1..1 |
| Type | instant |
| Summary | True |
| Alias | Date published, Date Issued, Date Verified |
| Requirements | Clinicians need to be able to check the date that the report was released. |
| Comments | May be different from the update time of the resource itself, because that is the status of the record (potentially a secondary copy), not the actual release time of the report. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.issued.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..1 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.issued.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..* |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.issued.extension:addendumCreationDate | |
| Short | Addendum Creation Date |
| Definition | Extension for capturing addendum creation date |
| Cardinality | 0..1 |
| Type | Extension(dateTime) |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.issued.value | |
| Short | Primitive value for instant |
| Definition | Primitive value for instant |
| Cardinality | 0..1 |
| Type | System.DateTime |
| DiagnosticReport.performer | |
| Short | Responsible Diagnostic Service |
| Definition | The diagnostic service that is responsible for issuing the report. |
| Cardinality | 1..2 |
| Type | Reference(CareTeam | Organization | Practitioner | PractitionerRole) |
| Summary | True |
| Alias | Laboratory, Service, Practitioner, Department, Company, Authorized by, Director |
| Requirements | Need to know whom to contact if there are queries about the results. Also may need to track the source of reports for secondary data analysis. |
| Comments | This is not necessarily the source of the atomic data items or the entity that interpreted the results. It is the entity that takes responsibility for the clinical report. |
| Slicing | Unordered, Closed, by type(Value) |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.performer:Organization | |
| Short | A reference from one resource to another |
| Definition | A reference from one resource to another. |
| Cardinality | 0..1 |
| Type | Reference(Organization) |
| Summary | True |
| Alias | Laboratory, Service, Practitioner, Department, Company, Authorized by, Director |
| Requirements | Need to know whom to contact if there are queries about the results. Also may need to track the source of reports for secondary data analysis. |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.performer:Practitioner | |
| Short | A reference from one resource to another |
| Definition | A reference from one resource to another. |
| Cardinality | 0..1 |
| Type | Reference(Practitioner) |
| Summary | True |
| Alias | Laboratory, Service, Practitioner, Department, Company, Authorized by, Director |
| Requirements | Need to know whom to contact if there are queries about the results. Also may need to track the source of reports for secondary data analysis. |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter | |
| Short | A reference from one resource to another |
| Definition | A reference from one resource to another. |
| Cardinality | 1..* |
| Type | Reference(Practitioner) |
| Summary | True |
| Alias | Analyzed by, Reported by |
| Requirements | Need to know whom to contact if there are queries about the results. Also may need to track the source of reports for secondary data analysis. |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..0 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.resultsInterpreter.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..0 |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.reference | |
| Short | Literal reference, Relative, internal or absolute URL |
| Definition | A reference to a location at which the other resource is found. The reference may be a relative reference, in which case it is relative to the service base URL, or an absolute URL that resolves to the location where the resource is found. The reference may be version specific or not. If the reference is not to a FHIR RESTful server, then it should be assumed to be version specific. Internal fragment references (start with '#') refer to contained resources. |
| Cardinality | 0..0 |
| Type | string |
| Summary | True |
| Comments | Using absolute URLs provides a stable scalable approach suitable for a cloud/web context, while using relative/logical references provides a flexible approach suitable for use when trading across closed eco-system boundaries. Absolute URLs do not need to point to a FHIR RESTful server, though this is the preferred approach. If the URL conforms to the structure "[type]/[id]" then it should be assumed that the reference is to a FHIR RESTful server. |
| Conditions | The cardinality or value of this element may be affected by these constraints: ref-2, ref-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.type | |
| Short | Type the reference refers to (e.g. "Patient") - must be a resource in resources |
| Definition | The expected type of the target of the reference. If both Reference.type and Reference.reference are populated and Reference.reference is a FHIR URL, both SHALL be consistent. The type is the Canonical URL of Resource Definition that is the type this reference refers to. References are URLs that are relative to http://hl7.org/fhir/StructureDefinition/ e.g. "Patient" is a reference to http://hl7.org/fhir/StructureDefinition/Patient. Absolute URLs are only allowed for logical models (and can only be used in references in logical models, not resources). |
| Cardinality | 1..1 |
| Type | uri |
| Binding | Aa resource (or, for logical models, the URI of the logical model). |
| Summary | True |
| Comments | This element is used to indicate the type of the target of the reference. This may be used which ever of the other elements are populated (or not). In some cases, the type of the target may be determined by inspection of the reference (e.g. a known RESTful URL) or by resolving the target of the reference. |
| Constraints |
|
| Fixed Value | Practitioner |
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier | |
| Short | An identifier intended for computation |
| Definition | An identifier - identifies some entity uniquely and unambiguously. Typically this is used for business identifiers. |
| Cardinality | 1..1 |
| Type | Identifier |
| Summary | True |
| Comments | The rules of the identifier.type determine if a check digit is part of the ID value or sent separately, such as through the checkDigit extension. |
| Conditions | The cardinality or value of this element may be affected by these constraints: ref-2 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..0 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..0 |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.use | |
| Short | usual | official | temp | secondary | old (If known) |
| Definition | The purpose of this identifier. |
| Cardinality | 0..0 |
| Type | code |
| Binding | Identifies the purpose for this identifier, if known . |
| Modifier | True |
| Summary | True |
| Requirements | Allows the appropriate identifier for a particular context of use to be selected from among a set of identifiers. |
| Comments | Applications can assume that an identifier is permanent unless it explicitly says that it is temporary. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.type | |
| Short | Description of identifier |
| Definition | A coded type for the identifier that can be used to determine which identifier to use for a specific purpose. |
| Cardinality | 0..0 |
| Type | CodeableConcept |
| Binding | A coded type for an identifier that can be used to determine which identifier to use for a specific purpose. |
| Summary | True |
| Requirements | Allows users to make use of identifiers when the identifier system is not known. |
| Comments | This element deals only with general categories of identifiers. It SHOULD not be used for codes that correspond 1..1 with the Identifier.system. Some identifiers may fall into multiple categories due to common usage. Where the system is known, a type is unnecessary because the type is always part of the system definition. However systems often need to handle identifiers where the system is not known. There is not a 1:1 relationship between type and system, since many different systems have the same type. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.system | |
| Short | The namespace for the identifier value |
| Definition | Establishes the namespace for the value - that is, an absolute URL that describes a set values that are unique. |
| Cardinality | 1..1 |
| Type | uri |
| Summary | True |
| Requirements | There are many sets of identifiers. To perform matching of two identifiers, we need to know what set we're dealing with. The system identifies a particular set of unique identifiers. |
| Comments | Identifier.system is always case sensitive. |
| Value alternatives |
|
| Constraints |
|
| Examples | Generalhttp://www.acme.com/identifiers/patient |
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.value | |
| Short | The value that is unique |
| Definition | The portion of the identifier typically relevant to the user and which is unique within the context of the system. |
| Cardinality | 1..1 |
| Type | string |
| Summary | True |
| Comments | If the value is a full URI, then the system SHALL be urn:ietf:rfc:3986. The value's primary purpose is computational mapping. As a result, it may be normalized for comparison purposes (e.g. removing non-significant whitespace, dashes, etc.) A value formatted for human display can be conveyed using the http://hl7.org/fhir/StructureDefinition/rendered-value). Identifier.value is to be treated as case sensitive unless knowledge of the Identifier.system allows the processer to be confident that non-case-sensitive processing is safe. |
| Conditions | The cardinality or value of this element may be affected by these constraints: ident-1 |
| Constraints |
|
| Examples | General123456 |
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.period | |
| Short | Time period when id is/was valid for use |
| Definition | Time period during which identifier is/was valid for use. |
| Cardinality | 0..0 |
| Type | Period |
| Summary | True |
| Comments | A Period specifies a range of time; the context of use will specify whether the entire range applies (e.g. "the patient was an inpatient of the hospital for this time range") or one value from the range applies (e.g. "give to the patient between these two times"). Period is not used for a duration (a measure of elapsed time). See Duration. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.identifier.assigner | |
| Short | Organization that issued id (may be just text) |
| Definition | Organization that issued/manages the identifier. |
| Cardinality | 0..0 |
| Type | Reference(Organization) |
| Summary | True |
| Comments | The Identifier.assigner may omit the .reference element and only contain a .display element reflecting the name or other textual information about the assigning organization. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.resultsInterpreter.display | |
| Short | Text alternative for the resource |
| Definition | Plain text narrative that identifies the resource in addition to the resource reference. |
| Cardinality | 0..0 |
| Type | string |
| Summary | True |
| Comments | This is generally not the same as the Resource.text of the referenced resource. The purpose is to identify what's being referenced, not to fully describe it. |
| Conditions | The cardinality or value of this element may be affected by these constraints: ref-2 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.specimen | |
| Short | Specimens this report is based on |
| Definition | Details about the specimens on which this diagnostic report is based. |
| Cardinality | 1..1 |
| Type | Reference(GenomicsSpecimen) |
| Requirements | Need to be able to report information about the collected specimens on which the report is based. |
| Comments | If the specimen is sufficiently specified with a code in the test result name, then this additional data may be redundant. If there are multiple specimens, these may be represented per observation or group. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.result | |
| Short | Observations |
| Definition | Observations that are part of this diagnostic report. |
| Cardinality | 1..* |
| Type | Reference(Observation) |
| Alias | Data, Atomic Value, Result, Atomic result, Data, Test, Analyte, Battery, Organizer |
| Requirements | Need to support individual results, or groups of results, where the result grouping is arbitrary, but meaningful. |
| Comments | Observations can contain observations. |
| Slicing | Unordered, Closed, by $this.resolve()(Profile) |
| Conditions | The cardinality or value of this element may be affected by these constraints: dgr-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.result:molecular-biomarker | |
| Short | Observations |
| Definition | Observations that are part of this diagnostic report. |
| Cardinality | 0..* |
| Type | Reference(MolecularBiomarker) |
| Alias | Data, Atomic Value, Result, Atomic result, Data, Test, Analyte, Battery, Organizer |
| Requirements | Need to support individual results, or groups of results, where the result grouping is arbitrary, but meaningful. |
| Comments | Observations can contain observations. |
| Conditions | The cardinality or value of this element may be affected by these constraints: dgr-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.result:variant | |
| Short | Observations |
| Definition | Observations that are part of this diagnostic report. |
| Cardinality | 0..* |
| Type | Reference(Variant) |
| Alias | Data, Atomic Value, Result, Atomic result, Data, Test, Analyte, Battery, Organizer |
| Requirements | Need to support individual results, or groups of results, where the result grouping is arbitrary, but meaningful. |
| Comments | Observations can contain observations. |
| Conditions | The cardinality or value of this element may be affected by these constraints: dgr-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.note | |
| Short | Comments about the diagnostic report |
| Definition | Comments about the diagnostic report. |
| Cardinality | 0..0 |
| Type | Annotation |
| Requirements | Need to be able to provide free text additional information. |
| Comments | May include general statements about the diagnostic report, or statements about significant, unexpected or unreliable results values contained within the diagnostic report, or information about its source when relevant to its interpretation. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.study | |
| Short | Reference to full details of an analysis associated with the diagnostic report |
| Definition | One or more links to full details of any study performed during the diagnostic investigation. An ImagingStudy might comprise a set of radiologic images obtained via a procedure that are analyzed as a group. Typically, this is imaging performed by DICOM enabled modalities, but this is not required. A fully enabled PACS viewer can use this information to provide views of the source images. A GenomicStudy might comprise one or more analyses, each serving a specific purpose. These analyses may vary in method (e.g., karyotyping, CNV, or SNV detection), performer, software, devices used, or regions targeted. |
| Cardinality | 0..0 |
| Type | Reference(GenomicStudy | ImagingStudy) |
| Comments | For laboratory-type studies like GenomeStudy, type resources will be used for tracking additional metadata and workflow aspects of complex studies. ImagingStudy and the media element are somewhat overlapping - typically, the list of image references in the media element will also be found in one of the imaging study resources. However, each caters to different types of displays for different types of purposes. Neither, either, or both may be provided. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.supportingInfo | |
| Short | Additional information supporting the diagnostic report |
| Definition | This backbone element contains supporting information that was used in the creation of the report not included in the results already included in the report. |
| Cardinality | 0..0 |
| Type | BackboneElement |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.supportingInfo.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..1 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.supportingInfo.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..* |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.supportingInfo.modifierExtension | |
| Short | Extensions that cannot be ignored even if unrecognized |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Cardinality | 0..* |
| Type | Extension |
| Modifier | True |
| Summary | True |
| Alias | extensions, user content, modifiers |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.supportingInfo.type | |
| Short | Supporting information role code |
| Definition | The code value for the role of the supporting information in the diagnostic report. |
| Cardinality | 1..1 |
| Type | CodeableConcept |
| Binding | The code value for the role of the supporting information in the diagnostic report. |
| Comments | Not all terminology uses fit this general pattern. In some cases, models should not use CodeableConcept and use Coding directly and provide their own structure for managing text, codings, translations and the relationship between elements and pre- and post-coordination. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.supportingInfo.reference | |
| Short | Supporting information reference |
| Definition | The reference for the supporting information in the diagnostic report. |
| Cardinality | 1..1 |
| Type | Reference(Citation | DiagnosticReport | Observation | Procedure) |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.media | |
| Short | Key images or data associated with this report |
| Definition | A list of key images or data associated with this report. The images or data are generally created during the diagnostic process, and may be directly of the patient, or of treated specimens (i.e. slides of interest). |
| Cardinality | 0..0 |
| Type | BackboneElement |
| Summary | True |
| Alias | DICOM, Slides, Scans |
| Requirements | Many diagnostic services include images or data in the report as part of their service. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.media.id | |
| Short | Unique id for inter-element referencing |
| Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. |
| Cardinality | 0..1 |
| Type | string |
| Conditions | The cardinality or value of this element may be affected by these constraints: ele-1 |
| Mappings |
|
| DiagnosticReport.media.extension | |
| Short | Additional content defined by implementations |
| Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. |
| Cardinality | 0..* |
| Type | Extension |
| Alias | extensions, user content |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Slicing | Unordered, Open, by url(Value) Extensions are always sliced by (at least) url |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.media.modifierExtension | |
| Short | Extensions that cannot be ignored even if unrecognized |
| Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). |
| Cardinality | 0..* |
| Type | Extension |
| Modifier | True |
| Summary | True |
| Alias | extensions, user content, modifiers |
| Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. |
| Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.media.comment | |
| Short | Comment about the image or data (e.g. explanation) |
| Definition | A comment about the image or data. Typically, this is used to provide an explanation for why the image or data is included, or to draw the viewer's attention to important features. |
| Cardinality | 0..1 |
| Type | string |
| Requirements | The provider of the report should make a comment about each image or data included in the report. |
| Comments | The comment should be displayed with the image or data. It would be common for the report to include additional discussion of the image or data contents or in other sections such as the conclusion. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.media.link | |
| Short | Reference to the image or data source |
| Definition | Reference to the image or data source. |
| Cardinality | 1..1 |
| Type | Reference(DocumentReference) |
| Summary | True |
| Comments | References SHALL be a reference to an actual FHIR resource, and SHALL be resolvable (allowing for access control, temporary unavailability, etc.). Resolution can be either by retrieval from the URL, or, where applicable by resource type, by treating an absolute reference as a canonical URL and looking it up in a local registry/repository. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.composition | |
| Short | Reference to a Composition resource for the DiagnosticReport structure |
| Definition | Reference to a Composition resource instance that provides structure for organizing the contents of the DiagnosticReport. |
| Cardinality | 0..0 |
| Type | Reference(Composition) |
| Comments | The Composition provides structure to the content of the DiagnosticReport (and only contains contents referenced in the DiagnosticReport) - e.g., to order the sections of an anatomic pathology structured report. |
| Conditions | The cardinality or value of this element may be affected by these constraints: dgr-1 |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.conclusion | |
| Short | Clinical conclusion (interpretation) of test results |
| Definition | Concise and clinically contextualized summary conclusion (interpretation/impression) of the diagnostic report. |
| Cardinality | 0..0 |
| Type | markdown |
| Alias | Report |
| Requirements | Need to be able to provide a conclusion that is not lost among the basic result data. |
| Comments | Systems are not required to have markdown support, so the text should be readable without markdown processing. The markdown syntax is GFM - see https://github.github.com/gfm/ |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.conclusionCode | |
| Short | Codes for the clinical conclusion of test results |
| Definition | One or more codes that represent the summary conclusion (interpretation/impression) of the diagnostic report. |
| Cardinality | 0..0 |
| Type | CodeableConcept |
| Binding | SNOMED CT Clinical Findings |
| Comments | Not all terminology uses fit this general pattern. In some cases, models should not use CodeableConcept and use Coding directly and provide their own structure for managing text, codings, translations and the relationship between elements and pre- and post-coordination. |
| Constraints |
|
| Mappings |
|
| DiagnosticReport.presentedForm | |
| Short | Entire report as issued |
| Definition | Rich text representation of the entire result as issued by the diagnostic service. Multiple formats are allowed but they SHALL be semantically equivalent. |
| Cardinality | 0..0 |
| Type | Attachment |
| Requirements | Gives laboratory the ability to provide its own fully formatted report for clinical fidelity. |
| Comments | "application/pdf" is recommended as the most reliable and interoperable in this context. |
| Constraints |
|
| Mappings |
|
Business Information Model
Key Design Considerations
Scope and Usage
The Genomic Report is the focus of genomic testing. It conveys metadata about the overall report (type of test, when it was written, who wrote it, final vs. draft status, etc.) and groups together all relevant information found as part of the genomic analysis. The structured genomic information is expressed primarily as FHIR Observations, while clinical recommendations based on genomic findings are expressed as FHIR Tasks.
Key considerations:
- Result Organization: Results may be organized by genomic observation type (variants, molecular biomarkers, genotypes, haplotypes, etc.) using sliced references to specific profile types.
- Recommendations: Medication or clinical recommendations based on genomic findings are captured through the
ext-recommended-actionextension, referencing MedicationRecommendation Tasks. - Specimen Traceability: A mandatory link to the GenomicsSpecimen ensures traceability of the tested sample.
- Service Request Linkage: A mandatory reference to GenomicsServiceRequest links the report back to the original order.
References: HL7 Genomics Reporting Implementation Guide v4.0.0
API Specification
See DiagnosticReport.$submit for the API specification to submit genomics reports.
Terminology Bindings
| Path | Binding Strength | Value Set (Code System) | Description |
|---|---|---|---|
| DiagnosticReport.language | required | http://hl7.org/fhir/ValueSet/all-languages|5.0.0 | IETF language tag for a human language |
| DiagnosticReport.status | required | http://hl7.org/fhir/ValueSet/diagnostic-report-status|5.0.0 | The status of the diagnostic report. |
| DiagnosticReport.code | preferred | http://hl7.org/fhir/ValueSet/report-codes | LOINC Codes for Diagnostic Reports |
| DiagnosticReport.resultsInterpreter.type | extensible | http://hl7.org/fhir/ValueSet/resource-types | Aa resource (or, for logical models, the URI of the logical model). |
| DiagnosticReport.supportingInfo.type | example | http://terminology.hl7.org/ValueSet/v2-0936 | The code value for the role of the supporting information in the diagnostic report. |