<status value="draft" /> <purpose value="A logical model of the Variant Call Format model, specifying the format text files used in bioinformatics for storing gene sequence variations." /> <fhirVersion value="3.0.2" /> <kind value="logical" /> <abstract value="false" /> <type value="VCF" /> <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Element" /> <derivation value="specialization" /> <differential> <element id="VCF"> <path value="VCF" /> <definition value="VCF (root element)" /> <min value="0" /> <max value="1" /> </element> <element id="VCF.Header"> <path value="VCF.Header" /> <definition value="Container for the metainfo of the file" /> <min value="1" /> <max value="1" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.fileformat"> <path value="VCF.Header.fileformat" /> <definition value="The format of the file and the version number. Should be given in the following format: "VCFv4.1"" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.contig"> <path value="VCF.Header.contig" /> <definition value="A contiguousset of overlapping DNA segments that represent a consensus region of DNA. A list of IDs for the DNA sequences that appear in the reference genome." /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.contig.ID"> <path value="VCF.Header.contig.ID" /> <definition value="Identification tag for the contig segment" /> <min value="1" /> <max value="1" /> <type> <code value="id" /> </type> </element> <element id="VCF.Header.contig.Optional"> <path value="VCF.Header.contig.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.contig.Optional.Name"> <path value="VCF.Header.contig.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.contig.Optional.Value"> <path value="VCF.Header.contig.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.INFO"> <path value="VCF.Header.INFO" /> <definition value="The info field should be described as follows: ##INFO=<ID=ID, Number=number, Type=type, Description="description">" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.INFO.ID"> <path value="VCF.Header.INFO.ID" /> <definition value="ID given to the instance" /> <min value="1" /> <max value="1" /> <type> <code value="id" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.INFO.Number"> <path value="VCF.Header.INFO.Number" /> <definition value="Number describes the number of values that can be included in the info field" /> <min value="1" /> <max value="1" /> <type> <code value="integer" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.INFO.Type"> <path value="VCF.Header.INFO.Type" /> <definition value="Type describes the datatype of the field" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.INFO.Description"> <path value="VCF.Header.INFO.Description" /> <definition value="Description of the ID" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.INFO.Optional"> <path value="VCF.Header.INFO.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.INFO.Optional.Name"> <path value="VCF.Header.INFO.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.INFO.Optional.Value"> <path value="VCF.Header.INFO.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.FILTER"> <path value="VCF.Header.FILTER" /> <definition value="Filters that have been applied to the data. ##FILTER=<ID=ID, Description="description">" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FILTER.ID"> <path value="VCF.Header.FILTER.ID" /> <definition value="ID given to the instance" /> <min value="1" /> <max value="1" /> <type> <code value="id" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FILTER.Description"> <path value="VCF.Header.FILTER.Description" /> <definition value="Description of the ID" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FILTER.Optional"> <path value="VCF.Header.FILTER.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.FILTER.Optional.Name"> <path value="VCF.Header.FILTER.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.FILTER.Optional.Value"> <path value="VCF.Header.FILTER.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.FORMAT"> <path value="VCF.Header.FORMAT" /> <definition value="Format of the file" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FORMAT.ID"> <path value="VCF.Header.FORMAT.ID" /> <comment value="ID given to the instance" /> <min value="1" /> <max value="1" /> <type> <code value="id" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FORMAT.Number"> <path value="VCF.Header.FORMAT.Number" /> <definition value="Number describes the number of values that can be included in the format field" /> <min value="1" /> <max value="1" /> <type> <code value="integer" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FORMAT.Type"> <path value="VCF.Header.FORMAT.Type" /> <definition value="Type describes the datatype of the field" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FORMAT.Description"> <path value="VCF.Header.FORMAT.Description" /> <comment value="Description of the ID" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.FORMAT.Optional"> <path value="VCF.Header.FORMAT.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.FORMAT.Optional.Name"> <path value="VCF.Header.FORMAT.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.FORMAT.Optional.Value"> <path value="VCF.Header.FORMAT.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.ALT"> <path value="VCF.Header.ALT" /> <definition value="Filters that have been applied to the data. ##FILTER=<ID=ID, Description="description">" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.ALT.ID"> <path value="VCF.Header.ALT.ID" /> <definition value="ID given to the instance" /> <min value="1" /> <max value="1" /> <type> <code value="id" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.ALT.Description"> <path value="VCF.Header.ALT.Description" /> <definition value="Description of the ID" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Header.ALT.Optional"> <path value="VCF.Header.ALT.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.ALT.Optional.Name"> <path value="VCF.Header.ALT.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.ALT.Optional.Value"> <path value="VCF.Header.ALT.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.OPTIONAL"> <path value="VCF.Header.OPTIONAL" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.OPTIONAL.Name"> <path value="VCF.Header.OPTIONAL.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.OPTIONAL.Value"> <path value="VCF.Header.OPTIONAL.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.PEDIGREE"> <path value="VCF.Header.PEDIGREE" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.PEDIGREE.Optional"> <path value="VCF.Header.PEDIGREE.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.PEDIGREE.Optional.Name"> <path value="VCF.Header.PEDIGREE.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.PEDIGREE.Optional.Value"> <path value="VCF.Header.PEDIGREE.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.pedigreeDB"> <path value="VCF.Header.pedigreeDB" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.pedigreeDB.url"> <path value="VCF.Header.pedigreeDB.url" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE"> <path value="VCF.Header.SAMPLE" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.SAMPLE.ID"> <path value="VCF.Header.SAMPLE.ID" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE.Genomes"> <path value="VCF.Header.SAMPLE.Genomes" /> <min value="0" /> <max value="*" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE.Mixture"> <path value="VCF.Header.SAMPLE.Mixture" /> <min value="0" /> <max value="*" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE.Description"> <path value="VCF.Header.SAMPLE.Description" /> <min value="0" /> <max value="*" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE.Optional"> <path value="VCF.Header.SAMPLE.Optional" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> </element> <element id="VCF.Header.SAMPLE.Optional.Name"> <path value="VCF.Header.SAMPLE.Optional.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Header.SAMPLE.Optional.Value"> <path value="VCF.Header.SAMPLE.Optional.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Body"> <path value="VCF.Body" /> <definition value="Content of the file" /> <min value="1" /> <max value="1" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records"> <path value="VCF.Body.Records" /> <min value="1" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="false" /> </element> <element id="VCF.Body.Records.CHROM"> <path value="VCF.Body.Records.CHROM" /> <min value="1" /> <max value="1" /> <type> <code value="CodeableConcept" /> </type> <mustSupport value="true" /> <binding> <strength value="required" /> <valueSetUri value="http://hl7.org/fhir/ValueSet/chromosome-human" /> </binding> </element> <element id="VCF.Body.Records.POS"> <path value="VCF.Body.Records.POS" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.ID"> <path value="VCF.Body.Records.ID" /> <min value="1" /> <max value="*" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.REF"> <path value="VCF.Body.Records.REF" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.ALT"> <path value="VCF.Body.Records.ALT" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.QUAL"> <path value="VCF.Body.Records.QUAL" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.FILTER"> <path value="VCF.Body.Records.FILTER" /> <min value="1" /> <max value="*" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.INFO"> <path value="VCF.Body.Records.INFO" /> <min value="1" /> <max value="*" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.FORMAT"> <path value="VCF.Body.Records.FORMAT" /> <min value="0" /> <max value="*" /> <type> <code value="string" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.SAMPLE"> <path value="VCF.Body.Records.SAMPLE" /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mustSupport value="true" /> </element> <element id="VCF.Body.Records.SAMPLE.Name"> <path value="VCF.Body.Records.SAMPLE.Name" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="VCF.Body.Records.SAMPLE.Value"> <path value="VCF.Body.Records.SAMPLE.Value" /> <min value="1" /> <max value="1" /> <type> <code value="string" /> </type> </element> </differential> </StructureDefinition>