{
  "resourceType": "StructureDefinition",
  "id": "PathogenDetectionSequence",
  "url": "https://demis.rki.de/fhir/igs/StructureDefinition/PathogenDetectionSequence",
  "version": "2.0.2",
  "name": "PathogenDetectionSequence",
  "title": "Sequenz-Erregernachweis",
  "status": "active",
  "date": "2025-11-04",
  "publisher": "Robert Koch-Institut",
  "contact": [
    {
      "telecom": [
        {
          "system": "email",
          "value": "demis-support@rki.de"
        }
      ]
    }
  ],
  "description": "Der Sequenz-Erregernachweis enthält die Angaben über die erfolgte Sequenzierung mit dem Ergebnis der Spezies- oder Variantenbestimmung. Für die Übermittlung sind die für die DEMIS-Labormeldung (https://simplifier.net/rki.demis.laboratory) erregerspezifischen ValueSets zu verwenden.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "version": "ALPHA-2",
          "code": "DE"
        }
      ]
    }
  ],
  "copyright": "Copyright (C) 2021-2025 Robert Koch-Institut",
  "fhirVersion": "4.0.1",
  "mapping": [
    {
      "identity": "sct-concept",
      "uri": "http://snomed.info/conceptdomain",
      "name": "SNOMED CT Concept Domain Binding"
    },
    {
      "identity": "sct-attr",
      "uri": "http://snomed.org/attributebinding",
      "name": "SNOMED CT Attribute Binding"
    }
  ],
  "kind": "resource",
  "abstract": true,
  "type": "Observation",
  "baseDefinition": "https://demis.rki.de/fhir/StructureDefinition/PathogenDetection",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Observation.meta",
        "path": "Observation.meta",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Observation.meta.profile",
        "path": "Observation.meta.profile",
        "min": 1,
        "max": "1",
        "patternCanonical": "https://demis.rki.de/fhir/igs/StructureDefinition/PathogenDetectionSequence",
        "mustSupport": true
      },
      {
        "id": "Observation.subject",
        "path": "Observation.subject",
        "short": "Betroffene Person (anonym)",
        "definition": "Betroffene Person (anonym)",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/StructureDefinition/NotifiedPersonAnonymous"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ]
      },
      {
        "id": "Observation.specimen",
        "path": "Observation.specimen",
        "short": "Verweis auf die dem Labortest zugrundeliegende Sequenz-Probe",
        "definition": "Verweis auf die dem Labortest zugrundeliegende Sequenz-Probe.",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SpecimenSequence"
            ],
            "aggregation": [
              "bundled"
            ]
          }
        ]
      },
      {
        "id": "Observation.device",
        "path": "Observation.device",
        "short": "Verweis auf das Sequenzierungsgerät",
        "definition": "Verweis auf das Sequenzierungsgerät",
        "min": 1,
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/SequencingDevice"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Observation.device.reference",
        "path": "Observation.device.reference",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Observation.derivedFrom",
        "path": "Observation.derivedFrom",
        "short": "Verweis auf die Sequenz",
        "definition": "Verweis auf die Sequenz",
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "Reference",
            "targetProfile": [
              "https://demis.rki.de/fhir/igs/StructureDefinition/Sequence"
            ]
          }
        ],
        "mustSupport": true
      },
      {
        "id": "Observation.derivedFrom.reference",
        "path": "Observation.derivedFrom.reference",
        "min": 1,
        "mustSupport": true
      }
    ]
  }
}