{
  "resourceType": "ConceptMap",
  "id": "genomics-primarysample",
  "url": "https://fhir.nhs.uk/ConceptMap/genomics-primarysample",
  "version": "0.2.0",
  "name": "GenomicsPrimarySample",
  "title": "Genomics Primary Sample",
  "status": "draft",
  "date": "2026-10-22",
  "publisher": "NHS England",
  "contact": [
    {
      "name": "NHS England",
      "telecom": [
        {
          "system": "email",
          "value": "interoperabilityteam@nhs.net"
        }
      ]
    }
  ],
  "description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
  "purpose": "ConceptMap used for the translation and recording of concepts for the categories of primary sample types.This is intended for the element Specimen.type",
  "copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at  http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at  https://www.hl7.org/fhir/license.html.",
  "targetUri": "http://snomed.info/sct?fhir_vs=ecl/%3C%3C%20123038009%20",
  "group": [
    {
      "source": "https://future.nhs.uk/NHSgenomics/view?objectId=308506117",
      "target": "http://snomed.info/sct",
      "element": [
        {
          "code": "peripheral-blood",
          "display": "Peripheral Blood",
          "target": [
            {
              "code": "122551003",
              "display": "Peripheral blood specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "liquid-blood",
          "display": "Liquid Blood",
          "target": [
            {
              "code": "119297000",
              "display": "Blood specimen",
              "equivalence": "wider"
            }
          ]
        },
        {
          "code": "fetal-blood",
          "display": "Fetal Blood",
          "target": [
            {
              "code": "737357006",
              "display": "Fetal blood specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "products of conception",
          "display": "Products Of Conception",
          "target": [
            {
              "code": "258428005",
              "display": "Products of conception tissue specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "urine",
          "display": "Urine",
          "target": [
            {
              "code": "122575003",
              "display": "Urine specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "saliva",
          "display": "Saliva",
          "target": [
            {
              "code": "119342007",
              "display": "Saliva specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "cerebrospinal-fluid",
          "display": "Cerebrospinal Fluid",
          "target": [
            {
              "code": "258450006",
              "display": "Cerebrospinal fluid specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "pericardial",
          "display": "Pericardial",
          "target": [
            {
              "code": "122571007",
              "display": "Pericardial fluid specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "peritoneal",
          "display": "Peritoneal",
          "target": [
            {
              "code": "430250001",
              "display": "Specimen from peritoneum",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "pleural-fluid",
          "display": "Pleural Fluid",
          "target": [
            {
              "code": "418564007",
              "display": "Pleural fluid specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "buccal",
          "display": "Buccal",
          "target": [
            {
              "code": "258564008",
              "display": "Buccal smear specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "fibroblasts",
          "display": "Fibroblasts",
          "target": [
            {
              "code": "119333000",
              "display": "Fibroblast specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "cord-blood",
          "display": "Cord Blood",
          "target": [
            {
              "code": "122556008",
              "display": "Cord blood specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "tumour",
          "display": "Tumour",
          "target": [
            {
              "code": "258435002",
              "display": "Tumor tissue specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "bone-marrrow-aspirate",
          "display": "Bone Marrrow Aspirate",
          "target": [
            {
              "code": "396997002",
              "display": "Specimen from bone marrow obtained by aspiration",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "lymph-node",
          "display": "Lymph Node",
          "target": [
            {
              "code": "258589002",
              "display": "Lymph node specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "skin",
          "display": "Skin",
          "target": [
            {
              "code": "119325001",
              "display": "Skin specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "bone-marrow-trephine",
          "display": "Bone Marrow Trephine",
          "target": [
            {
              "code": "258585008",
              "display": "Bone marrow trephine specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "chorionic-villus-specimen",
          "display": "Chorionic Villus Specimen",
          "target": [
            {
              "code": "258565009",
              "display": "Chorionic villi specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "amniotic-fluid",
          "display": "Amniotic Fluid",
          "target": [
            {
              "code": "119373006",
              "display": "Amniotic fluid specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "muscle",
          "display": "Muscle",
          "target": [
            {
              "code": "705054005",
              "display": "Muscle specimen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "spleen",
          "display": "Spleen",
          "target": [
            {
              "code": "433308004",
              "display": "Specimen from spleen",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "heart",
          "display": "Heart",
          "target": [
            {
              "code": "127462005",
              "display": "Specimen from heart",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "liver",
          "display": "Liver",
          "target": [
            {
              "code": "119383005",
              "display": "Specimen from liver",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "kidney",
          "display": "Kidney",
          "target": [
            {
              "code": "127473003",
              "display": "Specimen from kidney",
              "equivalence": "equivalent"
            }
          ]
        },
        {
          "code": "other",
          "display": "Other",
          "target": [
            {
              "code": "123038009",
              "display": "Specimen",
              "equivalence": "wider",
              "comment": "Any other suitable descendant of 123038009|Specimen (specimen) not listed on this code. This should be provided by free text if no suitable SNOMED CT is found."
            }
          ]
        }
      ]
    }
  ]
}