Name Flags Card. Type Description & Constraints doco
. . Composition 0 .. * Composition
. . . type 1 .. 1 CodeableConcept
. . . . coding 0 .. * Coding
. . . . . system 0 .. 1 uri Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/document-type
. . . . . code 0 .. 1 code Fixed Value: phenopacket
. . . subject 0 .. 1 Reference(Individual) {b}
. . . title 1 .. 1 string Fixed Value: Phenopacket
. . . section 0 .. * (Slice Definition) Slice: Unordered, Closed by value:code
. . . . section:encounters 0..1 BackboneElement
. . . . . title 0 .. 1 string Encounters
Fixed Value: Encounters
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: encounters
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Encounters
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Encounter - Phenopackets) {b} This is a list of interactions between the subject and a healthcare provider.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0
. . . . section:phenotypicFeatures 0..1 BackboneElement
. . . . . title 0 .. 1 string Phenotypic Features
Fixed Value: Phenotypic Features
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: phenotypic-features
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Phenotypic Features
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Phenotypic Feature) {b} This is a list of phenotypic features of the patient.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0
. . . . section:observations 0..1 BackboneElement
. . . . . title 0 .. 1 string Observations
Fixed Value: Observations
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: observations
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Observations
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Observation) {b} This is a list of observations related to the patient. Includes phenotypic features.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0
. . . . section:biosamples 0..1 BackboneElement
. . . . . title 0 .. 1 string Biosamples
Fixed Value: Biosamples
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: biosamples
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Biosamples
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Biosample) {b} Samples that have been derived from the patient who is the subject of the Phenopacket.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0
. . . . section:genomicsReports 0..1 BackboneElement
. . . . . title 0 .. 1 string Genomics Reports
Fixed Value: Genomics Reports
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: genomics-reports
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Genomics Reports
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Genomics Report) {b} Genomics reports about the patient who is the subject of the Phenopacket.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0
. . . . section:diseases 0..1 BackboneElement
. . . . . title 0 .. 1 string Diseases
Fixed Value: Diseases
. . . . . code 0 .. 1 CodeableConcept Fixed Value: As shown
. . . . . . coding 1..1 Coding Code defined by a terminology system
Fixed Value: (complex)
. . . . . . . system 1..1 uri Identity of the terminology system
Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
. . . . . . . version 1..1 string Version of the system - if relevant
Fixed Value: 0.1.0
. . . . . . . code 1..1 code Symbol in syntax defined by the system
Fixed Value: diseases
. . . . . . . display 1..1 string Representation defined by the system
Fixed Value: Diseases
. . . . . focus 0 .. 0
. . . . . entry 0 .. * Reference(Disease) {b} List of either diagnosed or suspected conditions of the patient that is the subject of the Phenopacket.
. . . . . emptyReason 0 .. 0
. . . . . section 0 .. 0

doco Documentation for this format
<status value="draft" /> <date value="2019-12-20T18:15:04+00:00" /> <publisher value="Global Alliance for Genomics and Health" /> <contact> <telecom> <system value="other" /> <value value="http://ga4gh.org" /> <rank value="1" /> </telecom> </contact> <description value="A Phenopacket is an anonymous phenotypic description of an individual or biosample with potential genes of interest and/or diagnoses." /> <fhirVersion value="4.0.1" /> <mapping> <identity value="workflow" /> <uri value="http://hl7.org/fhir/workflow" /> <name value="Workflow Pattern" /> </mapping> <mapping> <identity value="rim" /> <uri value="http://hl7.org/v3" /> <name value="RIM Mapping" /> </mapping> <mapping> <identity value="cda" /> <uri value="http://hl7.org/v3/cda" /> <name value="CDA (R2)" /> </mapping> <mapping> <identity value="fhirdocumentreference" /> <uri value="http://hl7.org/fhir/documentreference" /> <name value="FHIR DocumentReference" /> </mapping> <mapping> <identity value="w5" /> <uri value="http://hl7.org/fhir/fivews" /> <name value="FiveWs Pattern Mapping" /> </mapping> <kind value="resource" /> <abstract value="false" /> <type value="Composition" /> <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Composition" /> <derivation value="constraint" /> <snapshot /> <differential> <element id="Composition"> <path value="Composition" /> </element> <element id="Composition.type"> <path value="Composition.type" /> </element> <element id="Composition.type.coding"> <path value="Composition.type.coding" /> </element> <element id="Composition.type.coding.system"> <path value="Composition.type.coding.system" /> <fixedUri value="http://ga4gh.org/fhir/phenopackets/CodeSystem/document-type" /> </element> <element id="Composition.type.coding.code"> <path value="Composition.type.coding.code" /> <fixedCode value="phenopacket" /> </element> <element id="Composition.subject"> <path value="Composition.subject" /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/Individual" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.title"> <path value="Composition.title" /> <fixedString value="Phenopacket" /> </element> <element id="Composition.section"> <path value="Composition.section" /> <slicing> <discriminator> <type value="value" /> <path value="code" /> </discriminator> <ordered value="false" /> <rules value="closed" /> </slicing> </element> <element id="Composition.section:encounters"> <path value="Composition.section" /> <sliceName value="encounters" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:encounters.title"> <path value="Composition.section.title" /> <short value="Encounters" /> <definition value="This is a list of interactions between the subject and a healthcare provider." /> <fixedString value="Encounters" /> </element> <element id="Composition.section:encounters.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="encounters" /> <display value="Encounters" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:encounters.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:encounters.entry"> <path value="Composition.section.entry" /> <short value="This is a list of interactions between the subject and a healthcare provider." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/Encounter-Phenopackets" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:encounters.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:encounters.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:phenotypicFeatures"> <path value="Composition.section" /> <sliceName value="phenotypicFeatures" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:phenotypicFeatures.title"> <path value="Composition.section.title" /> <short value="Phenotypic Features" /> <definition value="This is a list of phenotypic features of the patient." /> <fixedString value="Phenotypic Features" /> </element> <element id="Composition.section:phenotypicFeatures.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="phenotypic-features" /> <display value="Phenotypic Features" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:phenotypicFeatures.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:phenotypicFeatures.entry"> <path value="Composition.section.entry" /> <short value="This is a list of phenotypic features of the patient." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/PhenotypicFeature" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:phenotypicFeatures.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:phenotypicFeatures.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:observations"> <path value="Composition.section" /> <sliceName value="observations" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:observations.title"> <path value="Composition.section.title" /> <short value="Observations" /> <definition value="This is a list of observations related to the patient. Includes phenotypic features." /> <fixedString value="Observations" /> </element> <element id="Composition.section:observations.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="observations" /> <display value="Observations" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:observations.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:observations.entry"> <path value="Composition.section.entry" /> <short value="This is a list of observations related to the patient. Includes phenotypic features." /> <type> <code value="Reference" /> <targetProfile value="http://hl7.org/fhir/StructureDefinition/Observation" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:observations.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:observations.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:biosamples"> <path value="Composition.section" /> <sliceName value="biosamples" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:biosamples.title"> <path value="Composition.section.title" /> <short value="Biosamples" /> <definition value="Samples that have been derived from the patient who is the object of the Phenopacket." /> <fixedString value="Biosamples" /> </element> <element id="Composition.section:biosamples.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="biosamples" /> <display value="Biosamples" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:biosamples.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:biosamples.entry"> <path value="Composition.section.entry" /> <short value="Samples that have been derived from the patient who is the subject of the Phenopacket." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/Biosample" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:biosamples.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:biosamples.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:genomicsReports"> <path value="Composition.section" /> <sliceName value="genomicsReports" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:genomicsReports.title"> <path value="Composition.section.title" /> <short value="Genomics Reports" /> <definition value="Genomics reports about the patient who is the subject of the Phenopacket." /> <fixedString value="Genomics Reports" /> </element> <element id="Composition.section:genomicsReports.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="genomics-reports" /> <display value="Genomics Reports" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:genomicsReports.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:genomicsReports.entry"> <path value="Composition.section.entry" /> <short value="Genomics reports about the patient who is the subject of the Phenopacket." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/GenomicsReport" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:genomicsReports.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:genomicsReports.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:diseases"> <path value="Composition.section" /> <sliceName value="diseases" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:diseases.title"> <path value="Composition.section.title" /> <short value="Diseases" /> <definition value="List of either diagnosed or suspected conditions of the patient that is the subject of the Phenopacket." /> <fixedString value="Diseases" /> </element> <element id="Composition.section:diseases.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="diseases" /> <display value="Diseases" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:diseases.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:diseases.entry"> <path value="Composition.section.entry" /> <short value="List of either diagnosed or suspected conditions of the patient that is the subject of the Phenopacket." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/Disease" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:diseases.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:diseases.section"> <path value="Composition.section.section" /> <max value="0" /> </element> </differential> </StructureDefinition>