<ConceptMap xmlns="http://hl7.org/fhir">
  <id value="dna-change-type" />
  <meta>
    <lastUpdated value="2019-12-20T21:26:14.149+00:00" />
  </meta>
  <text>
    <status value="generated" />
    <div xmlns="http://www.w3.org/1999/xhtml">
      <h2>DNAChangeType (http://hl7.org/fhir/uv/genomics-reporting/ConceptMap/dna-change-type)</h2>
      <p>Mapping from http://loinc.org to http://www.sequenceontology.org</p>
      <p>DRAFT (not intended for production usage). Published on Oct 4, 2019, 12:00:00 AM by HL7 (Clinical Genomics) (). </p>
      <div>
        <p>LOINC and SequenceOntology mappings for dna change type</p>
      </div>
      <br />
      <table class="grid">
        <tr>
          <td>
            <b>Source Code</b>
          </td>
          <td>
            <b>Relationship</b>
          </td>
          <td>
            <b>Destination Code</b>
          </td>
        </tr>
        <tr>
          <td>LA9658-1 (Wild type)</td>
          <td>equivalent</td>
          <td>SO:0002073</td>
        </tr>
        <tr>
          <td>LA6692-3 (Deletion)</td>
          <td>equivalent</td>
          <td>SO:0000159</td>
        </tr>
        <tr>
          <td>LA6686-5 (Duplication)</td>
          <td>equivalent</td>
          <td>SO:1000035</td>
        </tr>
        <tr>
          <td>LA6687-3 (Insertion)</td>
          <td>equivalent</td>
          <td>SO:0000667</td>
        </tr>
        <tr>
          <td>LA6688-1 (Insertion/Deletion)</td>
          <td>equivalent</td>
          <td>SO:1000032</td>
        </tr>
        <tr>
          <td>LA6689-9 (Inversion)</td>
          <td>equivalent</td>
          <td>SO:1000036</td>
        </tr>
        <tr>
          <td>LA6690-7 (Substitution)</td>
          <td>equivalent</td>
          <td>SO:1000002</td>
        </tr>
      </table>
    </div>
  </text>
  <url value="http://hl7.org/fhir/uv/genomics-reporting/ConceptMap/dna-change-type" />
  <version value="1.0.0" />
  <name value="DNAChangeType" />
  <status value="draft" />
  <experimental value="true" />
  <date value="2019-10-04T00:00:00+00:00" />
  <publisher value="HL7 (Clinical Genomics)" />
  <contact>
    <telecom>
      <system value="other" />
      <value value="https://confluence.hl7.org/display/CGW/WorkGroup+Home" />
    </telecom>
  </contact>
  <description value="LOINC and SequenceOntology mappings for dna change type" />
  <sourceCanonical value="http://loinc.org" />
  <targetCanonical value="http://www.sequenceontology.org" />
  <group>
    <source value="http://loinc.org" />
    <target value="http://www.sequenceontology.org" />
    <element>
      <code value="LA9658-1" />
      <display value="Wild type" />
      <target>
        <code value="SO:0002073" />
        <display value="no_sequence_alteration" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6692-3" />
      <display value="Deletion" />
      <target>
        <code value="SO:0000159" />
        <display value="deletion" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6686-5" />
      <display value="Duplication" />
      <target>
        <code value="SO:1000035" />
        <display value="duplication" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6687-3" />
      <display value="Insertion" />
      <target>
        <code value="SO:0000667" />
        <display value="insertion" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6688-1" />
      <display value="Insertion/Deletion" />
      <target>
        <code value="SO:1000032" />
        <display value="delins" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6689-9" />
      <display value="Inversion" />
      <target>
        <code value="SO:1000036" />
        <display value="inversion" />
        <equivalence value="equivalent" />
      </target>
    </element>
    <element>
      <code value="LA6690-7" />
      <display value="Substitution" />
      <target>
        <code value="SO:1000002" />
        <display value="substitution" />
        <equivalence value="equivalent" />
      </target>
    </element>
  </group>
</ConceptMap>