<status value="draft" /> <date value="2019-12-20T18:15:04+00:00" /> <publisher value="Global Alliance for Genomics and Health" /> <contact> <telecom> <system value="other" /> <value value="http://ga4gh.org" /> <rank value="1" /> </telecom> </contact> <description value="A group of individuals related in some phenotypic or genotypic aspect." /> <fhirVersion value="4.0.1" /> <mapping> <identity value="workflow" /> <uri value="http://hl7.org/fhir/workflow" /> <name value="Workflow Pattern" /> </mapping> <mapping> <identity value="rim" /> <uri value="http://hl7.org/v3" /> <name value="RIM Mapping" /> </mapping> <mapping> <identity value="cda" /> <uri value="http://hl7.org/v3/cda" /> <name value="CDA (R2)" /> </mapping> <mapping> <identity value="fhirdocumentreference" /> <uri value="http://hl7.org/fhir/documentreference" /> <name value="FHIR DocumentReference" /> </mapping> <mapping> <identity value="w5" /> <uri value="http://hl7.org/fhir/fivews" /> <name value="FiveWs Pattern Mapping" /> </mapping> <kind value="resource" /> <abstract value="false" /> <type value="Composition" /> <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Composition" /> <derivation value="constraint" /> <snapshot /> <differential> <element id="Composition"> <path value="Composition" /> </element> <element id="Composition.type"> <path value="Composition.type" /> </element> <element id="Composition.type.coding"> <path value="Composition.type.coding" /> </element> <element id="Composition.type.coding.system"> <path value="Composition.type.coding.system" /> <fixedUri value="http://ga4gh.org/fhir/phenopackets/CodeSystem/document-type" /> </element> <element id="Composition.type.coding.code"> <path value="Composition.type.coding.code" /> <fixedCode value="cohort" /> </element> <element id="Composition.subject"> <path value="Composition.subject" /> <max value="0" /> </element> <element id="Composition.title"> <path value="Composition.title" /> <fixedString value="Cohort" /> </element> <element id="Composition.section"> <path value="Composition.section" /> <slicing> <discriminator> <type value="value" /> <path value="code" /> </discriminator> <ordered value="false" /> <rules value="closed" /> </slicing> </element> <element id="Composition.section:members"> <path value="Composition.section" /> <sliceName value="members" /> <sliceIsConstraining value="false" /> <min value="1" /> <max value="1" /> </element> <element id="Composition.section:members.title"> <path value="Composition.section.title" /> <short value="Members" /> <definition value="List of Phenopackets that represent members of the cohort." /> <fixedString value="Members" /> </element> <element id="Composition.section:members.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="members" /> <display value="Members" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:members.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:members.entry"> <path value="Composition.section.entry" /> <short value="List of Phenopackets that represent members of the cohort." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/Phenopacket" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:members.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:members.section"> <path value="Composition.section.section" /> <max value="0" /> </element> <element id="Composition.section:htsFiles"> <path value="Composition.section" /> <sliceName value="htsFiles" /> <sliceIsConstraining value="false" /> <min value="0" /> <max value="1" /> </element> <element id="Composition.section:htsFiles.title"> <path value="Composition.section.title" /> <short value="HTS Files" /> <definition value="List of high-throughput sequencing files." /> <fixedString value="HTS Files" /> </element> <element id="Composition.section:htsFiles.code"> <path value="Composition.section.code" /> <fixedCodeableConcept> <coding> <system value="http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type" /> <version value="0.1.0" /> <code value="hts-files" /> <display value="HTS files" /> </coding> </fixedCodeableConcept> </element> <element id="Composition.section:htsFiles.focus"> <path value="Composition.section.focus" /> <max value="0" /> </element> <element id="Composition.section:htsFiles.entry"> <path value="Composition.section.entry" /> <short value="List of high-throughput sequencing files." /> <type> <code value="Reference" /> <targetProfile value="http://ga4gh.org/fhir/phenopackets/StructureDefinition/HtsFile" /> <aggregation value="bundled" /> </type> </element> <element id="Composition.section:htsFiles.emptyReason"> <path value="Composition.section.emptyReason" /> <max value="0" /> </element> <element id="Composition.section:htsFiles.section"> <path value="Composition.section.section" /> <max value="0" /> </element> </differential> </StructureDefinition>

Name	Card.	Type	Description & Constraints
Composition	0 .. *	Composition
type	1 .. 1	CodeableConcept
coding	0 .. *	Coding
system	0 .. 1	uri	Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/document-type
code	0 .. 1	code	Fixed Value: cohort
subject	0 .. 0
title	1 .. 1	string	Fixed Value: Cohort
section	0 .. *	(Slice Definition)	Slice: Unordered, Closed by value:code
section:members	1..1	BackboneElement
title	0 .. 1	string	Members Fixed Value: Members
code	0 .. 1	CodeableConcept	Fixed Value: As shown
coding	1..1	Coding	Code defined by a terminology system Fixed Value: (complex)
system	1..1	uri	Identity of the terminology system Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
version	1..1	string	Version of the system - if relevant Fixed Value: 0.1.0
code	1..1	code	Symbol in syntax defined by the system Fixed Value: members
display	1..1	string	Representation defined by the system Fixed Value: Members
focus	0 .. 0
entry	0 .. *	Reference(Phenopacket) {b }	List of Phenopackets that represent members of the cohort.
emptyReason	0 .. 0
section	0 .. 0
section:htsFiles	0..1	BackboneElement
title	0 .. 1	string	HTS Files Fixed Value: HTS Files
code	0 .. 1	CodeableConcept	Fixed Value: As shown
coding	1..1	Coding	Code defined by a terminology system Fixed Value: (complex)
system	1..1	uri	Identity of the terminology system Fixed Value: http://ga4gh.org/fhir/phenopackets/CodeSystem/section-type
version	1..1	string	Version of the system - if relevant Fixed Value: 0.1.0
code	1..1	code	Symbol in syntax defined by the system Fixed Value: hts-files
display	1..1	string	Representation defined by the system Fixed Value: HTS files
focus	0 .. 0
entry	0 .. *	Reference(Hts File) {b }	List of high-throughput sequencing files.
emptyReason	0 .. 0
section	0 .. 0
Documentation for this format