{ "resourceType": "StructureDefinition", "id": "Biosample", "meta": { "lastUpdated": "2019-12-20T21:26:06.576+00:00" }, "text": { "status": "generated", "div": "
NameFlagsCard.TypeDescription & Constraints\"doco\"
\".\"\".\"Specimen0..*Specimen
\".\"\".\"\".\"extension0..*ExtensionSlice: Unordered, Open by value:url
\".\"\".\"\".\"biosample-individual-age-at-collectionS0..1Age, RangeAge of the proband at the time the specimen was taken.
URL: http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-individual-age-at-collection
\".\"\".\"\".\"biosample-controlS0..1booleanWhether the sample is being used as a normal control.
URL: http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-control
\".\"\".\"\".\"identifierS0..*Identifier
\".\"\".\"\".\"typeS0..1CodeableConcept
\".\"\".\"\".\"subjectS0..1Reference(Patient | Group | Device | Substance | Location)
\".\"\".\"\".\"noteS0..*Annotation

\"doco\" Documentation for this format
" }, "url": "http://ga4gh.org/fhir/phenopackets/StructureDefinition/Biosample", "version": "0.1.0", "name": "Biosample", "title": "Biosample", "status": "draft", "date": "2019-12-20T18:15:04+00:00", "publisher": "Global Alliance for Genomics and Health", "contact": [ { "telecom": [ { "system": "other", "value": "http://ga4gh.org", "rank": 1 } ] } ], "description": "A unit of biological material from which the substrate molecules (e.g. genomic DNA, RNA, proteins) for molecular analyses (e.g. sequencing, array hybridisation, mass-spectrometry) are extracted.", "fhirVersion": "4.0.1", "mapping": [ { "identity": "rim", "uri": "http://hl7.org/v3", "name": "RIM Mapping" }, { "identity": "w5", "uri": "http://hl7.org/fhir/fivews", "name": "FiveWs Pattern Mapping" }, { "identity": "v2", "uri": "http://hl7.org/v2", "name": "HL7 v2 Mapping" } ], "kind": "resource", "abstract": false, "type": "Specimen", "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Specimen", "derivation": "constraint", "snapshot": {}, "differential": { "element": [ { "id": "Specimen", "path": "Specimen" }, { "id": "Specimen.extension", "path": "Specimen.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "ordered": false, "rules": "open" } }, { "id": "Specimen.extension:individualAgeAtCollection", "path": "Specimen.extension", "sliceName": "individualAgeAtCollection", "sliceIsConstraining": false, "label": "individualAgeAtCollection", "short": "Age of the proband at the time the specimen was taken.", "definition": "Age of the proband at the time the specimen was taken.", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-individual-age-at-collection" ] } ], "mustSupport": true }, { "id": "Specimen.extension:isControlSample", "path": "Specimen.extension", "sliceName": "isControlSample", "sliceIsConstraining": false, "label": "isControlSample", "short": "Whether the sample is being used as a normal control.", "definition": "Whether the sample is being used as a normal control.", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ga4gh.org/fhir/phenopackets/StructureDefinition/biosample-control" ] } ], "mustSupport": true }, { "id": "Specimen.identifier", "path": "Specimen.identifier", "mustSupport": true }, { "id": "Specimen.type", "path": "Specimen.type", "mustSupport": true }, { "id": "Specimen.subject", "path": "Specimen.subject", "mustSupport": true }, { "id": "Specimen.note", "path": "Specimen.note", "mustSupport": true } ] } }