<status value="active" /> <publisher value="Berlin Institute of Health @ Charité - Core Facility Digital Medicine and Interoperability" /> <contact> <telecom> <system value="url" /> <value value="https://www.bihealth.org/en/research/scientific-infrastructure/core-facilities/interoperability/home" /> </telecom> </contact> <description value="FHIR LogicalModel representing the assay_schema.json from as specified in ISA Model and Serialization Specifications 1.0 (2016-10-28)." /> <fhirVersion value="4.0.1" /> <mapping> <identity value="rim" /> <uri value="http://hl7.org/v3" /> <name value="RIM Mapping" /> </mapping> <mapping> <identity value="FHIR" /> <name value="Assay LogicalModel FHIR Mapping" /> </mapping> <kind value="logical" /> <abstract value="false" /> <type value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-assay" /> <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Element" /> <derivation value="specialization" /> <differential> <element id="isa-lm-assay"> <path value="isa-lm-assay" /> <short value="ISA LM Assay" /> <definition value="FHIR LogicalModel representing the assay_schema.json from as specified in ISA Model and Serialization Specifications 1.0 (2016-10-28)." /> </element> <element id="isa-lm-assay.Assay"> <path value="isa-lm-assay.Assay" /> <short value="Assay" /> <definition value="This schema implements Assay from the ISA Abstract Model." /> <min value="0" /> <max value="*" /> <type> <code value="BackboneElement" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation" /> </mapping> </element> <element id="isa-lm-assay.Assay.@id"> <path value="isa-lm-assay.Assay.@id" /> <short value="@id" /> <definition value="@id" /> <min value="0" /> <max value="1" /> <type> <code value="uri" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.id" /> </mapping> </element> <element id="isa-lm-assay.Assay.comments"> <path value="isa-lm-assay.Assay.comments" /> <short value="comments" /> <definition value="comments" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-comment" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.note" /> </mapping> </element> <element id="isa-lm-assay.Assay.filename"> <path value="isa-lm-assay.Assay.filename" /> <short value="filename" /> <definition value="filename" /> <min value="0" /> <max value="1" /> <type> <code value="string" /> </type> </element> <element id="isa-lm-assay.Assay.measurementType"> <path value="isa-lm-assay.Assay.measurementType" /> <short value="measurement type" /> <definition value="measurement type" /> <min value="0" /> <max value="1" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-ontology-annotation" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.code" /> </mapping> </element> <element id="isa-lm-assay.Assay.technologyType"> <path value="isa-lm-assay.Assay.technologyType" /> <short value="technology type" /> <definition value="technology type" /> <min value="0" /> <max value="1" /> <type> <code value="BackboneElement" /> </type> </element> <element id="isa-lm-assay.Assay.technologyType.ontologyAnnotation"> <path value="isa-lm-assay.Assay.technologyType.ontologyAnnotation" /> <short value="ontology annotation" /> <definition value="ontology annotation" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-ontology-annotation" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.method" /> </mapping> </element> <element id="isa-lm-assay.Assay.technologyPlatform"> <path value="isa-lm-assay.Assay.technologyPlatform" /> <short value="technology platform" /> <definition value="technology platform" /> <min value="0" /> <max value="1" /> <type> <code value="string" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.device.resolve().manufacturer and Observation.device.resolve().deviceName" /> </mapping> </element> <element id="isa-lm-assay.Assay.dataFiles"> <path value="isa-lm-assay.Assay.dataFiles" /> <short value="data files" /> <definition value="data files" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-data" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.extension:dataFiles.Reference(DocumentReference)" /> </mapping> </element> <element id="isa-lm-assay.Assay.materials"> <path value="isa-lm-assay.Assay.materials" /> <short value="materials" /> <definition value="materials" /> <min value="0" /> <max value="1" /> <type> <code value="BackboneElement" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.specimen or Observation.extension:additionalspecimen.Reference(Specimen)" /> </mapping> </element> <element id="isa-lm-assay.Assay.materials.samples"> <path value="isa-lm-assay.Assay.materials.samples" /> <short value="materials - samples" /> <definition value="materials - samples" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-sample" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.specimen or Observation.extension:additionalspecimen.Reference(Specimen)" /> </mapping> </element> <element id="isa-lm-assay.Assay.materials.otherMaterials"> <path value="isa-lm-assay.Assay.materials.otherMaterials" /> <short value="materials - other materials" /> <definition value="materials - other materials" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-material" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.specimen or Observation.extension:additionalspecimen.Reference(Specimen)" /> </mapping> </element> <element id="isa-lm-assay.Assay.characteristicCategories"> <path value="isa-lm-assay.Assay.characteristicCategories" /> <short value="Characteristic Categories" /> <definition value="List of all the characteristics categories (or material attributes) defined in the study, used to avoid duplication of their declaration when each material_attribute_value is created." /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-material-attribute" /> </type> </element> <element id="isa-lm-assay.Assay.unitCategories"> <path value="isa-lm-assay.Assay.unitCategories" /> <short value="Unit Categories" /> <definition value="List of all the unitsdefined in the study, used to avoid duplication of their declaration when each value is created." /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-ontology-annotation" /> </type> </element> <element id="isa-lm-assay.Assay.processSequence"> <path value="isa-lm-assay.Assay.processSequence" /> <short value="process sequence" /> <definition value="process sequence" /> <min value="0" /> <max value="*" /> <type> <code value="Reference" /> <targetProfile value="https://www.nfdi4health.de/fhir/ISA/StructureDefinition/isa-lm-process" /> </type> <mapping> <identity value="FHIR" /> <map value="Observation.extension:processSequence.valueReference(PlanDefinition|ActivityDefinition)" /> </mapping> </element> </differential> </StructureDefinition>