PATH-R4-32: UKCore-Specimen Snippets

An example of how each key UKCore-Specimen data element may be populated is provided below. Please note that the examples are provided to illustrate individual data element usage; the full set of data elements may not necessarily be consistent with one another or illustrate a single, complete clinical scenario.

Refer to the UKCore-Specimen profile definition for a detailed description of the supported data elements.

<Specimen xmlns="http://hl7.org/fhir">
<id value="Pathology-Specimen-Sn-Example" />
<!-- The canonical URL for the UKCore-Specimen profile. -->
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen" />
</meta>
<!-- A business identifier supplied by the organisation that collected the specimen. -->
<system value="http://B82033-pickeringmedicalpractice.com/specimen" />
<value value="SPC-REQ-20220208-000016" />
</identifier>
<!-- A business identifier supplied by the laboratory that is responsible for performing the test. -->
<system value="http://Y8J7D-pathlab001.com/specimen" />
<value value="SPC-Lab-20220208-001397" />
</accessionIdentifier>
<!-- The availability of the specimen. -->
<status value="available" />
<!-- The kind of material that forms the specimen. -->
<system value="http://snomed.info/sct" />
<code value="122555007" />
<display value="Venous blood specimen" />
</coding>
</type>
<!-- Reference to the subject that the specimen relates to. -->
<reference value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<display value="MOXEY, Judy" />
</subject>
<!-- The date and time that the specimen was received for processing. -->
<receivedTime value="2022-02-08T16:03:00+00:00" />
<!-- Reference to the ServiceRequest that the specimen relates to. -->
<reference value="urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac" />
</request>
<!-- Reference to the Practitioner or PractitionerRole that collected the specimen. -->
<reference value="urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe" />
<display value="GASKELL, Dr Gale" />
</collector>
<!-- The date and time that the specimen was collected. -->
<collectedDateTime value="2022-02-08T10:23:00+00:00" />
<!-- The quantity of specimen that was collected. -->
<value value="3" />
<unit value="mL" />
<system value="http://unitsofmeasure.org" />
<code value="mL" />
</quantity>
<!-- The anatomical site of the specimen collection. -->
<system value="http://snomed.info/sct" />
<code value="49852007" />
<display value="Structure of median cubital vein" />
</coding>
</bodySite>
<!-- Indicates abstinence or reduction from some or all food, drink, or both, for a period of time prior to specimen collection. -->
<system value="http://terminology.hl7.org/CodeSystem/v2-0916" />
<code value="F" />
<display value="Patient was fasting prior to the procedure." />
</coding>
</fastingStatusCodeableConcept>
</collection>
<!-- The state of the specimen. -->
<system value="http://terminology.hl7.org/CodeSystem/v2-0493" />
<code value="HEM" />
<display value="Hemolyzed" />
</coding>
</condition>
<!-- Notes relating to the specimen. -->
<text value="Specimen haemolysed. Unable to assay." />
</note>
</Specimen>
{
"resourceType": "Specimen",
"id": "Pathology-Specimen-Sn-Example",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen"
]
},
{
"system": "http://B82033-pickeringmedicalpractice.com/specimen",
"value": "SPC-REQ-20220208-000016"
}
],
"system": "http://Y8J7D-pathlab001.com/specimen",
"value": "SPC-Lab-20220208-001397"
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "122555007",
"display": "Venous blood specimen"
}
]
},
"subject": {
"reference": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"display": "MOXEY, Judy"
},
"receivedTime": "2022-02-08T16:03:00+00:00",
"request": [
{
"reference": "urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac"
}
],
"reference": "urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe",
"display": "GASKELL, Dr Gale"
},
"collectedDateTime": "2022-02-08T10:23:00+00:00",
"value": 3,
"unit": "mL",
"system": "http://unitsofmeasure.org",
"code": "mL"
},
"coding": [
{
"system": "http://snomed.info/sct",
"code": "49852007",
"display": "Structure of median cubital vein"
}
]
},
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0916",
"code": "F",
"display": "Patient was fasting prior to the procedure."
}
]
}
},
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0493",
"code": "HEM",
"display": "Hemolyzed"
}
]
}
],
"note": [
{
"text": "Specimen haemolysed. Unable to assay."
}
]
}
Specimen
Specimen.id[0]Pathology-Specimen-Sn-Example
Specimen.meta[0].profile[0]https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen
Specimen.identifier[0].system[0]http://B82033-pickeringmedicalpractice.com/specimen
Specimen.identifier[0].value[0]SPC-REQ-20220208-000016
Specimen.accessionIdentifier[0].system[0]http://Y8J7D-pathlab001.com/specimen
Specimen.accessionIdentifier[0].value[0]SPC-Lab-20220208-001397
Specimen.status[0]available
Specimen.type[0].coding[0].system[0]http://snomed.info/sct
Specimen.type[0].coding[0].code[0]122555007
Specimen.type[0].coding[0].display[0]Venous blood specimen
Specimen.subject[0].reference[0]urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4
Specimen.subject[0].display[0]MOXEY, Judy
Specimen.receivedTime[0]2022-02-08T16:03:00+00:00
Specimen.request[0].reference[0]urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac
Specimen.collection[0].collector[0].reference[0]urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe
Specimen.collection[0].collector[0].display[0]GASKELL, Dr Gale
Specimen.collection[0].collected[0]2022-02-08T10:23:00+00:00
Specimen.collection[0].quantity[0].value[0]3
Specimen.collection[0].quantity[0].unit[0]mL
Specimen.collection[0].quantity[0].system[0]http://unitsofmeasure.org
Specimen.collection[0].quantity[0].code[0]mL
Specimen.collection[0].bodySite[0].coding[0].system[0]http://snomed.info/sct
Specimen.collection[0].bodySite[0].coding[0].code[0]49852007
Specimen.collection[0].bodySite[0].coding[0].display[0]Structure of median cubital vein
Specimen.collection[0].fastingStatus[0].coding[0].system[0]http://terminology.hl7.org/CodeSystem/v2-0916
Specimen.collection[0].fastingStatus[0].coding[0].code[0]F
Specimen.collection[0].fastingStatus[0].coding[0].display[0]Patient was fasting prior to the procedure.
Specimen.condition[0].coding[0].system[0]http://terminology.hl7.org/CodeSystem/v2-0493
Specimen.condition[0].coding[0].code[0]HEM
Specimen.condition[0].coding[0].display[0]Hemolyzed
Specimen.note[0].text[0]Specimen haemolysed. Unable to assay.