PATH-R4-08: Bundle Example - HPV Primary Screening Report

path-mockup-HPV-report

  • This is an example of a report that contains a single test result.
  • The test result is defined as an Observation and is referenced from DiagnosticReport using DiagnosticReport.result.
  • The test result type is qualitative ("Not detected") and is specified using Observation.valueCodeableConcept.
  • Comments relating to the test result are carried in Observation.note.
  • In this example, the specimen (cervical swab) was collected after the request was made. The specimen is linked to the request within the Bundle using Specimen.request.

The following is a simplified logical data model that illustrates the key references between the FHIR profiles in the example message bundle. To aid clarity, not all of the references are shown. For a detailed description of the relationships between the FHIR profiles, and how they may be used, refer to How to Construct Bundles.


path-data-model-HPV-report
<Bundle xmlns="http://hl7.org/fhir">
<id value="Pathology-Bundle-HPV-Report-Example" />
<meta>
<lastUpdated value="2022-04-03T15:43:00+00:00" />
</meta>
<identifier>
<system value="https://tools.ietf.org/html/rfc4122" />
<value value="4e9c9282-5440-49a8-a61d-285d9aefedbd" />
</identifier>
<type value="message" />
<entry>
<fullUrl value="urn:uuid:f18a2226-c0ab-480d-b80a-b6561fe8f9c4" />
<resource>
<MessageHeader>
<!-- TBC Review content of MessageHeader -->
<id value="f18a2226-c0ab-480d-b80a-b6561fe8f9c4" />
<eventCoding>
<system value="http://snomed.info/sct" />
<code value="371528001" />
<display value="Pathology report" />
</eventCoding>
<destination>
<name value="PICKERING MEDICAL PRACTICE" />
<!-- TBC Update endpoint address -->
<endpoint value="TBC" />
<!-- Requesting Organisation -->
<receiver>
<reference value="urn:uuid:3c43b5b3-06d6-445f-ae9a-48d5f05df434" />
</receiver>
</destination>
<sender>
<!-- Performing Laboratory -->
<reference value="urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338" />
</sender>
<source>
<!-- TBC Update endpoint address -->
<endpoint value="TBC" />
</source>
<focus>
<!-- DiagnosticReport -->
<reference value="urn:uuid:35d46ca1-f253-4c97-b7ee-fb5fccdf6c20" />
</focus>
<definition value="https://fhir.nhs.uk/England/MessageDefinition/England-Pathology-Report" />
</MessageHeader>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338" />
<resource>
<Organization>
<!-- Performing Laboratory -->
<id value="8a6d85b8-9837-4fed-a257-4cf207988338" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="Y8J7D" />
</identifier>
<name value="TD008362 PATH LAB 001" />
<address>
<line value="PATHOLOGY LAB" />
<line value="7-8 WELLINGTON PLACE" />
<city value="LEEDS" />
<district value="WEST YORKSHIRE" />
<postalCode value="LS1 4AP" />
</address>
</Organization>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:3c43b5b3-06d6-445f-ae9a-48d5f05df434" />
<resource>
<Organization>
<!-- Requesting Organisation -->
<id value="3c43b5b3-06d6-445f-ae9a-48d5f05df434" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization" />
</meta>
<identifier>
<system value="https://fhir.nhs.uk/Id/ods-organization-code" />
<value value="B82033" />
</identifier>
<name value="PICKERING MEDICAL PRACTICE" />
<address>
<line value="SOUTHGATE" />
<city value="PICKERING" />
<district value="NORTH YORKSHIRE" />
<postalCode value="YO18 8BL" />
</address>
</Organization>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe" />
<resource>
<Practitioner>
<!-- Requesting Practitioner -->
<id value="9a835acf-d715-4d84-8dcf-a8435f6417fe" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner" />
</meta>
<identifier>
<system value="https://fhir.hl7.org.uk/Id/gmc-number" />
<value value="C1008215" />
</identifier>
<name>
<use value="official" />
<family value="GASKELL" />
<given value="Gale" />
<prefix value="Dr" />
</name>
</Practitioner>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<resource>
<Patient>
<id value="ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient" />
</meta>
<identifier>
<extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus">
<valueCodeableConcept>
<coding>
<system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland" />
<code value="01" />
<display value="Number present and verified" />
</coding>
</valueCodeableConcept>
</extension>
<system value="https://fhir.nhs.uk/Id/nhs-number" />
<value value="9727710859" />
</identifier>
<name>
<use value="official" />
<family value="MOXEY" />
<given value="Judy" />
</name>
<gender value="female" />
<birthDate value="2004-05-06" />
<address>
<line value="1 CASTLEGATE" />
<city value="PICKERING" />
<district value="NORTH YORKSHIRE" />
<postalCode value="YO18 7AY" />
</address>
</Patient>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac" />
<resource>
<ServiceRequest>
<id value="1c38d507-9ad7-4b49-ba91-7da204842cac" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest" />
</meta>
<identifier>
<system value="http://B82033-pickeringmedicalpractice.com/labrequest" />
<value value="REQ-20220321-000017" />
</identifier>
<status value="active" />
<intent value="order" />
<code>
<coding>
<!-- From PaLM procedure reference set -->
<system value="http://snomed.info/sct" />
<code value="700152009" />
<display value="Human papilloma virus screening" />
</coding>
</code>
<subject>
<reference value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<display value="MOXEY, Judy" />
</subject>
<authoredOn value="2022-03-21T10:17:00+00:00" />
<requester>
<reference value="urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe" />
<display value="GASKELL, Dr Gale" />
</requester>
<performer>
<reference value="urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338" />
<display value="TD008362 PATH LAB 001" />
</performer>
</ServiceRequest>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:bde5b0a5-4fb3-4655-acf0-215b93aee006" />
<resource>
<Specimen>
<id value="bde5b0a5-4fb3-4655-acf0-215b93aee006" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen" />
</meta>
<identifier>
<system value="http://B82033-pickeringmedicalpractice.com/specimen" />
<value value="SPC-REQ-20220321-000065" />
</identifier>
<accessionIdentifier>
<system value="http://Y8J7D-pathlab001.com/specimen" />
<value value="SPC-Lab-20220322-005962" />
</accessionIdentifier>
<status value="available" />
<type>
<coding>
<system value="http://snomed.info/sct" />
<code value="258524009" />
<display value="Cervical swab" />
</coding>
</type>
<subject>
<reference value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<display value="MOXEY, Judy" />
</subject>
<receivedTime value="2022-03-22T15:25:00+00:00" />
<request>
<reference value="urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac" />
</request>
<collection>
<collectedDateTime value="2022-03-22T11:04:00+00:00" />
</collection>
</Specimen>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:35d46ca1-f253-4c97-b7ee-fb5fccdf6c20" />
<resource>
<DiagnosticReport>
<id value="35d46ca1-f253-4c97-b7ee-fb5fccdf6c20" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-DiagnosticReport" />
</meta>
<identifier>
<system value="http://Y8J7D-pathlab001.com/report" />
<value value="REP-20220403-008209" />
</identifier>
<basedOn>
<reference value="urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac" />
</basedOn>
<status value="final" />
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074" />
<code value="LAB" />
<display value="Laboratory" />
</coding>
</category>
<code>
<coding>
<system value="http://snomed.info/sct" />
<code value="721981007" />
<display value="Diagnostic studies report" />
</coding>
</code>
<subject>
<reference value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<display value="MOXEY, Judy" />
</subject>
<issued value="2022-04-03T15:43:00+00:00" />
<performer>
<reference value="urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338" />
<display value="TD008362 PATH LAB 001" />
</performer>
<specimen>
<reference value="urn:uuid:bde5b0a5-4fb3-4655-acf0-215b93aee006" />
</specimen>
<result>
<reference value="urn:uuid:43526b6e-c48a-44d2-9c2a-1e3a2a20ac67" />
</result>
</DiagnosticReport>
</resource>
</entry>
<entry>
<fullUrl value="urn:uuid:43526b6e-c48a-44d2-9c2a-1e3a2a20ac67" />
<resource>
<Observation>
<id value="43526b6e-c48a-44d2-9c2a-1e3a2a20ac67" />
<meta>
<profile value="https://fhir.hl7.org.uk/StructureDefinition/UKCore-Observation-Lab" />
</meta>
<identifier>
<system value="https://tools.ietf.org/html/rfc4122" />
<value value="9e9890cb-db0c-4cc2-9dc8-5d9b6589bda1" />
</identifier>
<status value="final" />
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/observation-category" />
<code value="laboratory" />
<display value="Laboratory" />
</coding>
</category>
<code>
<coding>
<!-- From PaLM observable entity reference set (an equivalent PBCL code does not exist) -->
<system value="http://snomed.info/sct" />
<code value="50121000237101" />
<display value="Human papilloma virus RNA nucleic acid amplification qualitative result" />
</coding>
</code>
<subject>
<reference value="urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4" />
<display value="MOXEY, Judy" />
</subject>
<issued value="2022-04-03T15:43:00+00:00" />
<performer>
<reference value="urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338" />
<display value="TD008362 PATH LAB 001" />
</performer>
<valueCodeableConcept>
<coding>
<system value="http://snomed.info/sct" />
<code value="260415000" />
<display value="Not detected" />
</coding>
</valueCodeableConcept>
<note>
<text value="No cytology result (HPV Screening)" />
</note>
<note>
<text value="Suggested management : Normal Recall" />
</note>
<specimen>
<reference value="urn:uuid:bde5b0a5-4fb3-4655-acf0-215b93aee006" />
</specimen>
</Observation>
</resource>
</entry>
</Bundle>
{
"resourceType": "Bundle",
"id": "Pathology-Bundle-HPV-Report-Example",
"meta": {
"lastUpdated": "2022-04-03T15:43:00+00:00"
},
"identifier": {
"system": "https://tools.ietf.org/html/rfc4122",
"value": "4e9c9282-5440-49a8-a61d-285d9aefedbd"
},
"type": "message",
"entry": [
{
"fullUrl": "urn:uuid:f18a2226-c0ab-480d-b80a-b6561fe8f9c4",
"resource": {
"resourceType": "MessageHeader",
"id": "f18a2226-c0ab-480d-b80a-b6561fe8f9c4",
"eventCoding": {
"system": "http://snomed.info/sct",
"code": "371528001",
"display": "Pathology report"
},
"destination": [
{
"name": "PICKERING MEDICAL PRACTICE",
"endpoint": "TBC",
"receiver": {
"reference": "urn:uuid:3c43b5b3-06d6-445f-ae9a-48d5f05df434"
}
}
],
"sender": {
"reference": "urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338"
},
"source": {
"endpoint": "TBC"
},
"focus": [
{
"reference": "urn:uuid:35d46ca1-f253-4c97-b7ee-fb5fccdf6c20"
}
],
"definition": "https://fhir.nhs.uk/England/MessageDefinition/England-Pathology-Report"
}
},
{
"fullUrl": "urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338",
"resource": {
"resourceType": "Organization",
"id": "8a6d85b8-9837-4fed-a257-4cf207988338",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
]
},
"identifier": [
{
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "Y8J7D"
}
],
"name": "TD008362 PATH LAB 001",
"address": [
{
"line": [
"PATHOLOGY LAB",
"7-8 WELLINGTON PLACE"
],
"city": "LEEDS",
"district": "WEST YORKSHIRE",
"postalCode": "LS1 4AP"
}
]
}
},
{
"fullUrl": "urn:uuid:3c43b5b3-06d6-445f-ae9a-48d5f05df434",
"resource": {
"resourceType": "Organization",
"id": "3c43b5b3-06d6-445f-ae9a-48d5f05df434",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Organization"
]
},
"identifier": [
{
"system": "https://fhir.nhs.uk/Id/ods-organization-code",
"value": "B82033"
}
],
"name": "PICKERING MEDICAL PRACTICE",
"address": [
{
"line": [
"SOUTHGATE"
],
"city": "PICKERING",
"district": "NORTH YORKSHIRE",
"postalCode": "YO18 8BL"
}
]
}
},
{
"fullUrl": "urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe",
"resource": {
"resourceType": "Practitioner",
"id": "9a835acf-d715-4d84-8dcf-a8435f6417fe",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Practitioner"
]
},
"identifier": [
{
"system": "https://fhir.hl7.org.uk/Id/gmc-number",
"value": "C1008215"
}
],
"name": [
{
"use": "official",
"family": "GASKELL",
"given": [
"Gale"
],
"prefix": [
"Dr"
]
}
]
}
},
{
"fullUrl": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"resource": {
"resourceType": "Patient",
"id": "ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Patient"
]
},
"identifier": [
{
"extension": [
{
"url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
"valueCodeableConcept": {
"coding": [
{
"system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
"code": "01",
"display": "Number present and verified"
}
]
}
}
],
"system": "https://fhir.nhs.uk/Id/nhs-number",
"value": "9727710859"
}
],
"name": [
{
"use": "official",
"family": "MOXEY",
"given": [
"Judy"
]
}
],
"gender": "female",
"birthDate": "2004-05-06",
"address": [
{
"line": [
"1 CASTLEGATE"
],
"city": "PICKERING",
"district": "NORTH YORKSHIRE",
"postalCode": "YO18 7AY"
}
]
}
},
{
"fullUrl": "urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac",
"resource": {
"resourceType": "ServiceRequest",
"id": "1c38d507-9ad7-4b49-ba91-7da204842cac",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-ServiceRequest"
]
},
"identifier": [
{
"system": "http://B82033-pickeringmedicalpractice.com/labrequest",
"value": "REQ-20220321-000017"
}
],
"status": "active",
"intent": "order",
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "700152009",
"display": "Human papilloma virus screening"
}
]
},
"subject": {
"reference": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"display": "MOXEY, Judy"
},
"authoredOn": "2022-03-21T10:17:00+00:00",
"requester": {
"reference": "urn:uuid:9a835acf-d715-4d84-8dcf-a8435f6417fe",
"display": "GASKELL, Dr Gale"
},
"performer": [
{
"reference": "urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338",
"display": "TD008362 PATH LAB 001"
}
]
}
},
{
"fullUrl": "urn:uuid:bde5b0a5-4fb3-4655-acf0-215b93aee006",
"resource": {
"resourceType": "Specimen",
"id": "bde5b0a5-4fb3-4655-acf0-215b93aee006",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Specimen"
]
},
"identifier": [
{
"system": "http://B82033-pickeringmedicalpractice.com/specimen",
"value": "SPC-REQ-20220321-000065"
}
],
"accessionIdentifier": {
"system": "http://Y8J7D-pathlab001.com/specimen",
"value": "SPC-Lab-20220322-005962"
},
"status": "available",
"type": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "258524009",
"display": "Cervical swab"
}
]
},
"subject": {
"reference": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"display": "MOXEY, Judy"
},
"receivedTime": "2022-03-22T15:25:00+00:00",
"request": [
{
"reference": "urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac"
}
],
"collection": {
"collectedDateTime": "2022-03-22T11:04:00+00:00"
}
}
},
{
"fullUrl": "urn:uuid:35d46ca1-f253-4c97-b7ee-fb5fccdf6c20",
"resource": {
"resourceType": "DiagnosticReport",
"id": "35d46ca1-f253-4c97-b7ee-fb5fccdf6c20",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-DiagnosticReport"
]
},
"identifier": [
{
"system": "http://Y8J7D-pathlab001.com/report",
"value": "REP-20220403-008209"
}
],
"basedOn": [
{
"reference": "urn:uuid:1c38d507-9ad7-4b49-ba91-7da204842cac"
}
],
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0074",
"code": "LAB",
"display": "Laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "721981007",
"display": "Diagnostic studies report"
}
]
},
"subject": {
"reference": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"display": "MOXEY, Judy"
},
"issued": "2022-04-03T15:43:00+00:00",
"performer": [
{
"reference": "urn:uuid:8a6d85b8-9837-4fed-a257-4cf207988338",
"display": "TD008362 PATH LAB 001"
}
],
"specimen": [
{
"reference": "urn:uuid:bde5b0a5-4fb3-4655-acf0-215b93aee006"
}
],
"result": [
{
"reference": "urn:uuid:43526b6e-c48a-44d2-9c2a-1e3a2a20ac67"
}
]
}
},
{
"fullUrl": "urn:uuid:43526b6e-c48a-44d2-9c2a-1e3a2a20ac67",
"resource": {
"resourceType": "Observation",
"id": "43526b6e-c48a-44d2-9c2a-1e3a2a20ac67",
"meta": {
"profile": [
"https://fhir.hl7.org.uk/StructureDefinition/UKCore-Observation-Lab"
]
},
"identifier": [
{
"system": "https://tools.ietf.org/html/rfc4122",
"value": "9e9890cb-db0c-4cc2-9dc8-5d9b6589bda1"
}
],
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory",
"display": "Laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "50121000237101",
"display": "Human papilloma virus RNA nucleic acid amplification qualitative result"
}
]
},
"subject": {
"reference": "urn:uuid:ab87a3f8-1d37-44a9-804e-5e962598a6e4",
"display": "MOXEY, Judy"
},
"issued": "2022-04-03T15:43:00+00:00",
"performer": [
{
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