Notice
- Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
- This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.
ConceptMap Genomic Specimen Primary Sample State
| Usage |
|---|
ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition |
HTML View
| Source | Equivalence | Target | Comment |
|---|---|---|---|
| blood-spot (Blood spot) | equivalent | blood-spot (Blood spot) | |
| FFPE (Formalin-fixed paraffin-embedded) | equivalent | FFPE (Formalin-fixed paraffin-embedded) | |
| fresh (Fresh) | equivalent | fresh (Fresh) | |
| other (Other) | equivalent | other (Other) | Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text. |
| Source | Equivalence | Target | Comment |
|---|---|---|---|
| frozen (Frozen) | equivalent | FROZ (Frozen) | |
| flash-frozen (Flash Frozen) | unmatched | No equivelent code exists in the target system, the state SHOULD be recorded as free text | |
| nucleic-acid-stabiliser (Nucleic Acid Stabiliser) | unmatched | No equivelent code exists in the target system, the state SHOULD be recorded as free text |
Table View
| ConceptMap.id[0] | genomics-primary-sample-state |
| ConceptMap.url[0] | https://fhir.nhs.uk/ConceptMap/genomics-primary-sample-state |
| ConceptMap.version[0] | 0.2.0 |
| ConceptMap.name[0] | GenomicsPrimarySampleState |
| ConceptMap.title[0] | Genomics Primary Sample State |
| ConceptMap.status[0] | draft |
| ConceptMap.date[0] | 2026-10-22 |
| ConceptMap.publisher[0] | NHS England |
| ConceptMap.contact[0].name[0] | NHS England |
| ConceptMap.contact[0].telecom[0].system[0] | |
| ConceptMap.contact[0].telecom[0].value[0] | interoperabilityteam@nhs.net |
| ConceptMap.description[0] | A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec. |
| ConceptMap.purpose[0] | ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition |
| ConceptMap.copyright[0] | Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html. |
| ConceptMap.target[0] | https://fhir.hl7.org.uk/ValueSet/UKCore-SampleState |
| ConceptMap.group[0].source[0] | https://future.nhs.uk/NHSgenomics/view?objectId=308506117 |
| ConceptMap.group[0].target[0] | https://fhir.hl7.org.uk/CodeSystem/UKCore-PrimarySampleState |
| ConceptMap.group[0].element[0].code[0] | blood-spot |
| ConceptMap.group[0].element[0].display[0] | Blood spot |
| ConceptMap.group[0].element[0].target[0].code[0] | blood-spot |
| ConceptMap.group[0].element[0].target[0].display[0] | Blood spot |
| ConceptMap.group[0].element[0].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[1].code[0] | FFPE |
| ConceptMap.group[0].element[1].display[0] | Formalin-fixed paraffin-embedded |
| ConceptMap.group[0].element[1].target[0].code[0] | FFPE |
| ConceptMap.group[0].element[1].target[0].display[0] | Formalin-fixed paraffin-embedded |
| ConceptMap.group[0].element[1].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[2].code[0] | fresh |
| ConceptMap.group[0].element[2].display[0] | Fresh |
| ConceptMap.group[0].element[2].target[0].code[0] | fresh |
| ConceptMap.group[0].element[2].target[0].display[0] | Fresh |
| ConceptMap.group[0].element[2].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[3].code[0] | other |
| ConceptMap.group[0].element[3].display[0] | Other |
| ConceptMap.group[0].element[3].target[0].code[0] | other |
| ConceptMap.group[0].element[3].target[0].display[0] | Other |
| ConceptMap.group[0].element[3].target[0].equivalence[0] | equivalent |
| ConceptMap.group[0].element[3].target[0].comment[0] | Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text. |
| ConceptMap.group[1].source[0] | https://future.nhs.uk/NHSgenomics/view?objectId=308506117 |
| ConceptMap.group[1].target[0] | http://terminology.hl7.org/CodeSystem/v2-0493 |
| ConceptMap.group[1].element[0].code[0] | frozen |
| ConceptMap.group[1].element[0].display[0] | Frozen |
| ConceptMap.group[1].element[0].target[0].code[0] | FROZ |
| ConceptMap.group[1].element[0].target[0].display[0] | Frozen |
| ConceptMap.group[1].element[0].target[0].equivalence[0] | equivalent |
| ConceptMap.group[1].element[1].code[0] | flash-frozen |
| ConceptMap.group[1].element[1].display[0] | Flash Frozen |
| ConceptMap.group[1].element[1].target[0].equivalence[0] | unmatched |
| ConceptMap.group[1].element[1].target[0].comment[0] | No equivelent code exists in the target system, the state SHOULD be recorded as free text |
| ConceptMap.group[1].element[2].code[0] | nucleic-acid-stabiliser |
| ConceptMap.group[1].element[2].display[0] | Nucleic Acid Stabiliser |
| ConceptMap.group[1].element[2].target[0].equivalence[0] | unmatched |
| ConceptMap.group[1].element[2].target[0].comment[0] | No equivelent code exists in the target system, the state SHOULD be recorded as free text |
XML View
</telecom>
</contact>
<description value="A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec." />
<purpose value="ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition" />
<copyright value="Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html." />
</target>
</element>
</target>
</element>
</target>
</element>
<comment value="Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text." />
</target>
</element>
</group>
</target>
</element>
<comment value="No equivelent code exists in the target system, the state SHOULD be recorded as free text" />
</target>
</element>
<comment value="No equivelent code exists in the target system, the state SHOULD be recorded as free text" />
</target>
</element>
</group>
</ConceptMap>
JSON View
{
{
]
}
],
"description": "A ConceptMap used for the translation and recording of concepts from MDS source data(code-options) to equivalent Snomed CT codes, and FHIR spec.",
"purpose": "ConceptMap used for the translation and recording the concepts on method of sample preservation. This is intended for the element Specimen.condition",
"copyright": "Copyright © 2023+ NHS England Licensed under the Apache License, Version 2.0 (the \\\"License\\\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \\\"AS IS\\\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.",
{
{
]
},
{
]
},
{
]
},
{
{
"comment": "Any other suitable sample condition that is an alternative to concepts provided in this Conceptmap. This should be provided by free text."
}
]
}
]
},
{
{
]
},
{
{
"comment": "No equivelent code exists in the target system, the state SHOULD be recorded as free text"
}
]
},
{
{
"comment": "No equivelent code exists in the target system, the state SHOULD be recorded as free text"
}
]
}
]
}
]
}