FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

CodeSystem MDS Question Tag Genomics

Usage
A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag.

HTML View

Concepts

This code system https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics defines the following codes:

Lvl	Code	Display	Definition
1	datagroup-healthcare-professional	Healthcare Professional	Data group - Healthcare professional
2	HCP-1	HCP - Genomic test order role	HCP's function within the genomic test ordering process
2	HCP-2	HCP - First name	HCP's first name.
2	HCP-13	HCP - surname	HCP'surname
2	HCP-3	HCP - Job title	HCP's job title.
2	HCP-4	HCP - Current specialty	HCP's current specialty.
2	HCP-5	HCP - Telephone number	HCP's telephone number.
2	HCP-6	HCP - Email address	HCP's email address.
2	HCP-7	HCP - Organisation name	HCP's requesting organisation name.
2	HCP-9	HCP - Organisation ODS code	HCP's organisation ODS code
2	HCP-10	HCP - Department name	HCP's department name.
2	HCP-11	HCP - Professional registration number	HCP's professional registration number such as their GMC number.
2	HCP-12	HCP - Professional registration number type	HCP's professional registration number type such as 'GMC'.
1	datagroup-patient	Patient	Data group - Patient
2	P-1	Patient - Title	Patient's title.
2	P-2	Patient - First name	Patient's first name.
2	P-40	Patient - Middlename	Patient's middle name.
2	P-3	Patient - Surname	Patient's last name.
2	P-41	Patient - Name use	Links each patient name entry to confirm if current, previous or what the patient is known as.
2	P-4	Patient - Date of birth	Patient's date of birth.
2	P-6	Patient - Postcode	Patient's home postcode.
2	P-7	Patient - Country of residence	Patient's home country.
2	P-9	Patient - Ethnicity	Patient's ethnicity.
2	P-10	Patient - Sex defined at birth	Patient's phenotypic sex classification as defined at birth based on physical characteristic.
2	P-12	Patient - GP practice's ODS Code	Patient's GP practice ODS code.
2	P-13	Patient - Is from consanguineous union	The fact of the patient's biological parents being descended from the same ancestor.
2	P-15	Patient - NHS number	Patient's NHS number.
2	P-16	Patient - Local identifier	Patient's identification code other than NHS number.
2	P-42	Patient - ODS code of organisation which assigned local identifier	ODS code of the organisation which assigned the local identifier P-16.
2	P-17	Patient - Reason for unavailable NHS number	Reason for an NHS number not being provided.
2	P-18	Patient - Relationship to proband	This patient's relationship to the primary patient.
2	P-19	Patient - Gender Identity	Patient's stated gender, determined by the patient.
2	P-20	Patient - Deceased date	Patient's date of death.
2	P-21	Patient - Chromosomal sex	Patient's genomic / karyotypic characteristic. Determined by genomic testing.
2	P-35	Patient - Withheld identity reason	Confirmation why the patient is withholding identity details.
2	P-37	Patient - Local Pedigree / Family identifier	Patient's pedigree or family identifying id.
2	P-39	Patient - Reason for inclusion in genomic test request	Reason patient has been included in genomic test request, such as to support proband testing or providing own genomic reporting
1	datagroup-fetus	Fetus	Data group - Fetus
2	F-1	Fetus - Local identifier	Fetus' identification code other than NHS number.
2	F-7	Fetus - ODS code of organisation which assigned local identifier	ODS code of the organisation which assigned the local identifier F-1.
2	F-2	Fetus - Observed sex	Fetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM.
2	F-3	Fetus - Chromosomal sex	Fetus' genomic / karyotypic characteristic. Determined by genomic testing.
2	F-6	Fetus - Life status at time of request	Fetus' alive or deceased status details at the point of test ordering.
2	F-8	Fetus - Pregnancy id	The id of a given pregnancy which this fetus belongs to.
1	datagroup-test-request	Test Request	Data group - Test Request
2	TR-2	Test Request - Payment status	How the test request is funded
2	TR-4	Test Request - Requesting reason rare disease	The reason for a rare disease genomic test.
2	TR-38	Test Request - Requesting reason cancer	The reason for a cancer genomic test.
2	TR-5	Test Request - High level test identifier	Legacy high level ids which identify the requested test. Options provided by old Test Directory.
2	TR-6	Test Request - High level test identifier description	Legacy high level name of the id requested
2	TR-7	Test Request - Low level test identifier	The low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE).
2	TR-8	Test Request - Low level test identifier description	The low level CITT name of the considered test.
2	TR-9	Test Request - Low level multipurpose test identifier	The low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION).
2	TR-10	Test Request - Low level multipurpose test identifier description	The low level name of the test to be actioned when the CITT code is multipurpose.
2	TR-21	Test Request - Genomic package id	Id of the package requested.
2	TR-22	Test Request - Genomic package name	Name of the package requested.
2	TR-23	Test Request - Genomic package version	Version of the package requested.
2	TR-24	Test Request - Genomic test id	Id of the test requested.
2	TR-25	Test Request - Genomic test name	Name of the test requested.
2	TR-26	Test Request - Genomic test version	Version of the test requested.
2	TR-27	Test Request - Additional panels	Additional panels to test.
2	TR-28	Test request - Target type	Type of target to test.
2	TR-29	Test request - Target detail	Detail of target to test.
2	TR-11	Test Request - Count of patients to be tested	Count of patients to be tested including the proband/primary patient.
2	TR-12	Test Request - Urgency reason	The test request urgency reason.
2	TR-13	Test Request - Reanalysis reason	The reason reanalysis has been requested.
2	TR-14	Test Request - Detail of reason for request	Further detail associated to the reason reanalysis has been requested.
2	TR-15	Test Request - Type of reanalysis	The type of reanalysis which has been requested.
2	TR-17	Test Request - Is urgent	Confirmation if the test request is urgent.
2	TR-35	Test Request - Purpose of linking	The reason a given test request has been linked to another test request.
2	TR-36	Test Request - Central email address for reporting	Central email address for contingency in the event of not being able to obtain a report via the requester.
2	TR-20	Test Request - Genomic report delivery method	Test Request - Genomic report delivery method
2	TR-30	Test Request - Add private genomic request and report to NHS record	Confirmation if the content of a private genomic test request should be added to an NHS record.
2	TR-31	Test Request - Test request form version	Version of the test order form completed and submitted.
2	TR-32	Test Request - File / Link to file	Upload of a file or a link to a file for adding documents such as previous genomic reports to a test order.
2	TR-33	Test Request - File detail	Detail to provide context to an uploaded file or document link.
2	TR-34	Test Request - Clinical utility	Clinical benefit to patient of obtaining a requested genomic report.
2	TR-39	Test Request - Linked test request reference	The reference to any associated test requests
1	datagroup-ngrl-consent	NGRL-consent	Data group - NGRL consent
2	NGRL-1	NGRL consent - Date of NGRL consent	The date NGRL consent was provided.
2	NGRL-2	NGRL consent - Patient has made their own choice to consent to the NGRL	Confirmation if the patient to be tested has provided NGRL consent themselves.
2	NGRL-3	NGRL consent - Patient representative name (if patient cannot make their own choice)	The name of the patient representative.
2	NGRL-4	NGRL consent - I confirm that the patient (or their representative) agree to have their genomic and healthcare data used for research	The outcome of the patient or their representative’s choice in consenting to including their data used for research in the NGRL.
2	NGRL-5	NGRL consent - NGRL consent document link	A URL where a copy of a completed NGRL consent form may be found.
1	datagroup-primary-sample	Primary Sample	Data group - Primary Sample
2	PS-2	Primary Sample - Local identifier	Local ids applied to a sample
2	PS-3	Primary Sample - ODS code of organisation which assigned local id	ODS code of the organisation which assigned the local sample id.
2	PS-10	Primary Sample - Obtained date	Date at which a specimen/biopsy was obtained from patient.
2	PS-11	Primary Sample - Primary sample	The primary sample material.
2	PS-12	Primary Sample - Primary sample state	The state of the primary sample.
2	PS-25	Primary Sample - Preservative/Container	How the primary sample is preserved.
2	PS-30	Primary Sample - Block identifier	Sample block identifier
2	PS-31	Primary Sample - Fixative type	Sample fixative type
2	PS-32	Primary Sample - Hours to fixation	Sample hours to fixation
2	PS-33	Primary Sample - Hours in fixative	Sample hours in fixative
2	PS-34	Primary Sample - Tumour enrichment method	Method used for tumour enrichment.
2	PS-13	Primary Sample - Necrosis	% necrotic (dead) cells in primary sample.
2	PS-14	Primary Sample - Nucleated cell count	Nucleated (with nucleous) cell (non tumour and tumour) count in the primary sample (Solid Tumour and Haem-Onc).
2	PS-15	Primary Sample - Tumour nuclear content in whole section	Neoplastic (tumour) cell content in the primary sample whole section(Solid Tumour) - sourced at local lab. (%)
2	PS-26	Primary Sample - Tumour nuclear content in marked area	Neoplastic (tumour) cell content in the primary sample marked area(Solid Tumour) - sourced at local lab. (%)
2	PS-17	Primary Sample - Solid tumour morphology	The histology and likely course of development of a tumour.
2	PS-18	Primary Sample - Solid tumour topography	The tumour sample site. e.g. from colon, stomach etc.
2	PS-29	Primary Sample - Is biopsy	Primary Sample - Is biopsy
2	PS-19	Primary Sample - Biopsy site	Digital confirmation that the sample is a biopsy.
2	PS-21	Primary Sample - Observed maternal cell contamination (MCC)	An observed outcome which may indicate MCC
2	PS-27	Primary Sample - Test confirmed maternal cell contamination (MCC)	Analytically confirmed MCC levels
2	PS-22	Primary Sample - Option for all products of conception	Primary Sample - Option for all products of conception
2	PS-23	Primary Sample - Blasts %	Future management for products of conception.
2	PS-24	Primary Sample - High infection risk reason	The high contamination risk reason for a primary sample.
2	PS-28	Primary Sample - Patient life status at the time of collection	If the patient was alive or deceased at the point of collecting a sample.
2	PS-35	Primary Sample - Solid tumour type	The origin or context of a tumour sample.
1	datagroup-patient-clinical-information	Patient Clinical Information	Data group - Patient Clinical Information
2	PCI-1	Patient clinical information - Genomic Ethnicity	Patient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish
2	PCI-2	Patient clinical information - Disease Status	If the patient is affected, unaffected, or it is unknown.
2	PCI-4	Patient clinical information - Age at disease onset	The age when a change in patients' health was first noted in line with suspected diagnosis.
2	PCI-5	Patient clinical information - Known/Suspected Disease	Disease a patient is believed, known to have, or be at risk of developing.
2	PCI-6	Patient clinical information - Phenotypic details	The HPO (or alternative ontology as appropriate) term names for the observable disease traits.
2	PCI-7	Patient clinical information - Symptoms	The patient's symptoms
2	PCI-10	Patient clinical information - Count of tumours	How many tumours the patient has.
2	PCI-11	Patient clinical information - Site of tumour	Location of the tumours on the body.
2	PCI-14	Patient clinical information - Tumour sites - Body image diagram	Image attachment of body with tumour sites highlighted.
2	PCI-15	Patient clinical information - Pedigree details / Relevant family history	The patient's pedigree/family history details (inc family history of cancer).
2	PCI-16	Patient clinical information - Pedigree diagram	Image attachment of pedigree details
2	PCI-17	Patient clinical information - Laterality of hearing loss	Laterality of the hearing loss i.e. bilateral or unilateral.
2	PCI-18	Patient clinical information - Fetal haemoglobinopathy maternal screening genotype	Maternal screening genotype for haemoglobinopathy testing.
2	PCI-21	Patient clinical information - Legal considerations	Legal considerations for a given request.
2	PCI-22	Patient clinical information - Fetal haemoglobinopathy paternal screening genotype	Paternal screening genotype for haemoglobinopathy testing
2	PCI-23	Patient clinical information - Expected Maternity Unit - Organisation name	Requesting clinician's organisation name.
2	PCI-24	Patient clinical information - Expected Maternity Unit - Organisation address	Requesting clinician's organisation address.
2	PCI-25	Patient clinical information - Expected Maternity Unit - Organisation ODS code	Requesting clinician's organisation ODS code.
2	PCI-26	Patient clinical information - Expected Maternity Unit - Department name	Requesting clinician's department name.
2	PCI-27	Patient clinical information - Growth history	Summary passage of text to highlight patient centile history e.g. head circumference, weight, etc.
2	PCI-28	Patient clinical information - Severity of hearing loss	Free text regarding hearing loss
2	PCI-29	Patient clinical information - Retinal degeneration	Free text regarding retinal degeneration
2	PCI-30	Patient clinical information - Risk factors	Toxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication.
2	PCI-31	Patient clinical information - Suspected inborn error type(s)	Suspected inborn error type(s)
2	PCI-32	Patient clinical information - Abnormal infection history site	Abnormal infection history site organism
2	PCI-33	Patient clinical information - Abnormal infection history site organism	Abnormal infection history site organism
2	PCI-34	Is on ig replacement	If the patient is on immunoglobin replacement treatment.
2	PCI-35	Patient clinical information - Current and previous treatment detail	Detail regarding relevant current and previous medical treatments.
2	PCI-36	Patient clinical information - Pregnancy status	Patient`s pregnancy status
2	PCI-37	Patient clinical information - Pregnancy type	Type of conception
2	PCI-38	Patient clinical information - Pregnancy gestation period	Patient's term of active pregnancy at point of test request.
2	PCI-39	Patient clinical information - Fetal gestation	Stage during patient pregnancy at which it terminated.
2	PCI-40	Patient clinical information - Estimated delivery date (EDD)	Patient's estimated delivery date.
2	PCI-41	Patient clinical information - IVF age of egg donor	The age of the patient who donated the egg at the time of donation.
2	PCI-42	Patient clinical information - Had transplant	Has the patient ever had a transplant.
2	PCI-43	Patient clinical information - Type of transplant	What type of transplant the patient had.
2	PCI-44	Patient clinical information - Transplant date	When the patient had the transplant.
2	PCI-45	Patient clinical information - Had transfusion in the last 6 weeks	Has the patient had a transfusion in the last 6 weeks.
2	PCI-46	Patient clinical information - Type of transfusion	What type of transfusion the patient has had.
2	PCI-47	Patient clinical information - Transfusion date	When the patient had the transfusion.
2	PCI-48	Patient clinical information - Height (m)	Patient's height.
1	datagroup-miscellaneous	Miscellaneous	Data group - Miscellaneous
2	MIS-1	Further supporting information	Supporting information which has not been captured elsewhere.
1	datagroup-hospital-encounter	Hospital encounter	Data group - Hospital encounter
2	HE-1	Treatment function code (TFC)	The identifier for the clinical specialty or service under which the patient is being treated.
2	HE-2	Hospital provider spell identifier	The identifier for the patient's continuous period of care in a hospital provider setting, from admission to discharge.
2	HE-3	Outpatient attendance identifier	The identifier for the patient's specific outpatient appointment at which the genomic test may have been ordered.
2	HE-4	Hospital point of delivery code	The identifier that defines the type of care setting in which the genomic test was requested.

Table View

CodeSystem.id[0]	mds-questiontag-genomics
CodeSystem.url[0]	https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics
CodeSystem.version[0]	0.1.1
CodeSystem.name[0]	MDSQuestionTagGenomics
CodeSystem.title[0]	MDS Question Tag Genomics
CodeSystem.status[0]	draft
CodeSystem.date[0]	2025-12-15T00:00:00.000Z
CodeSystem.publisher[0]	NHS England
CodeSystem.contact[0].name[0]	NHS England
CodeSystem.contact[0].telecom[0].system[0]	email
CodeSystem.contact[0].telecom[0].value[0]	interoperabilityteam@nhs.net
CodeSystem.description[0]	A set of codes used to map MDS Dataset to FHIR Resources.This is intended to be used on Resource.meta.tag.
CodeSystem.copyright[0]	Copyright © 2025+ NHS England Licensed under the Apache License, Version 2.0 (the \"License\"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. HL7® FHIR® standard Copyright © 2011+ HL7 The HL7® FHIR® standard is used under the FHIR license. You may obtain a copy of the FHIR license at https://www.hl7.org/fhir/license.html.
CodeSystem.caseSensitive[0]	True
CodeSystem.hierarchyMeaning[0]	grouped-by
CodeSystem.content[0]	complete
CodeSystem.concept[0].code[0]	datagroup-healthcare-professional
CodeSystem.concept[0].display[0]	Healthcare Professional
CodeSystem.concept[0].definition[0]	Data group - Healthcare professional
CodeSystem.concept[0].concept[0].code[0]	HCP-1
CodeSystem.concept[0].concept[0].display[0]	HCP - Genomic test order role
CodeSystem.concept[0].concept[0].definition[0]	HCP's function within the genomic test ordering process
CodeSystem.concept[0].concept[1].code[0]	HCP-2
CodeSystem.concept[0].concept[1].display[0]	HCP - First name
CodeSystem.concept[0].concept[1].definition[0]	HCP's first name.
CodeSystem.concept[0].concept[2].code[0]	HCP-13
CodeSystem.concept[0].concept[2].display[0]	HCP - surname
CodeSystem.concept[0].concept[2].definition[0]	HCP'surname
CodeSystem.concept[0].concept[3].code[0]	HCP-3
CodeSystem.concept[0].concept[3].display[0]	HCP - Job title
CodeSystem.concept[0].concept[3].definition[0]	HCP's job title.
CodeSystem.concept[0].concept[4].code[0]	HCP-4
CodeSystem.concept[0].concept[4].display[0]	HCP - Current specialty
CodeSystem.concept[0].concept[4].definition[0]	HCP's current specialty.
CodeSystem.concept[0].concept[5].code[0]	HCP-5
CodeSystem.concept[0].concept[5].display[0]	HCP - Telephone number
CodeSystem.concept[0].concept[5].definition[0]	HCP's telephone number.
CodeSystem.concept[0].concept[6].code[0]	HCP-6
CodeSystem.concept[0].concept[6].display[0]	HCP - Email address
CodeSystem.concept[0].concept[6].definition[0]	HCP's email address.
CodeSystem.concept[0].concept[7].code[0]	HCP-7
CodeSystem.concept[0].concept[7].display[0]	HCP - Organisation name
CodeSystem.concept[0].concept[7].definition[0]	HCP's requesting organisation name.
CodeSystem.concept[0].concept[8].code[0]	HCP-9
CodeSystem.concept[0].concept[8].display[0]	HCP - Organisation ODS code
CodeSystem.concept[0].concept[8].definition[0]	HCP's organisation ODS code
CodeSystem.concept[0].concept[9].code[0]	HCP-10
CodeSystem.concept[0].concept[9].display[0]	HCP - Department name
CodeSystem.concept[0].concept[9].definition[0]	HCP's department name.
CodeSystem.concept[0].concept[10].code[0]	HCP-11
CodeSystem.concept[0].concept[10].display[0]	HCP - Professional registration number
CodeSystem.concept[0].concept[10].definition[0]	HCP's professional registration number such as their GMC number.
CodeSystem.concept[0].concept[11].code[0]	HCP-12
CodeSystem.concept[0].concept[11].display[0]	HCP - Professional registration number type
CodeSystem.concept[0].concept[11].definition[0]	HCP's professional registration number type such as 'GMC'.
CodeSystem.concept[1].code[0]	datagroup-patient
CodeSystem.concept[1].display[0]	Patient
CodeSystem.concept[1].definition[0]	Data group - Patient
CodeSystem.concept[1].concept[0].code[0]	P-1
CodeSystem.concept[1].concept[0].display[0]	Patient - Title
CodeSystem.concept[1].concept[0].definition[0]	Patient's title.
CodeSystem.concept[1].concept[1].code[0]	P-2
CodeSystem.concept[1].concept[1].display[0]	Patient - First name
CodeSystem.concept[1].concept[1].definition[0]	Patient's first name.
CodeSystem.concept[1].concept[2].code[0]	P-40
CodeSystem.concept[1].concept[2].display[0]	Patient - Middlename
CodeSystem.concept[1].concept[2].definition[0]	Patient's middle name.
CodeSystem.concept[1].concept[3].code[0]	P-3
CodeSystem.concept[1].concept[3].display[0]	Patient - Surname
CodeSystem.concept[1].concept[3].definition[0]	Patient's last name.
CodeSystem.concept[1].concept[4].code[0]	P-41
CodeSystem.concept[1].concept[4].display[0]	Patient - Name use
CodeSystem.concept[1].concept[4].definition[0]	Links each patient name entry to confirm if current, previous or what the patient is known as.
CodeSystem.concept[1].concept[5].code[0]	P-4
CodeSystem.concept[1].concept[5].display[0]	Patient - Date of birth
CodeSystem.concept[1].concept[5].definition[0]	Patient's date of birth.
CodeSystem.concept[1].concept[6].code[0]	P-6
CodeSystem.concept[1].concept[6].display[0]	Patient - Postcode
CodeSystem.concept[1].concept[6].definition[0]	Patient's home postcode.
CodeSystem.concept[1].concept[7].code[0]	P-7
CodeSystem.concept[1].concept[7].display[0]	Patient - Country of residence
CodeSystem.concept[1].concept[7].definition[0]	Patient's home country.
CodeSystem.concept[1].concept[8].code[0]	P-9
CodeSystem.concept[1].concept[8].display[0]	Patient - Ethnicity
CodeSystem.concept[1].concept[8].definition[0]	Patient's ethnicity.
CodeSystem.concept[1].concept[9].code[0]	P-10
CodeSystem.concept[1].concept[9].display[0]	Patient - Sex defined at birth
CodeSystem.concept[1].concept[9].definition[0]	Patient's phenotypic sex classification as defined at birth based on physical characteristic.
CodeSystem.concept[1].concept[10].code[0]	P-12
CodeSystem.concept[1].concept[10].display[0]	Patient - GP practice's ODS Code
CodeSystem.concept[1].concept[10].definition[0]	Patient's GP practice ODS code.
CodeSystem.concept[1].concept[11].code[0]	P-13
CodeSystem.concept[1].concept[11].display[0]	Patient - Is from consanguineous union
CodeSystem.concept[1].concept[11].definition[0]	The fact of the patient's biological parents being descended from the same ancestor.
CodeSystem.concept[1].concept[12].code[0]	P-15
CodeSystem.concept[1].concept[12].display[0]	Patient - NHS number
CodeSystem.concept[1].concept[12].definition[0]	Patient's NHS number.
CodeSystem.concept[1].concept[13].code[0]	P-16
CodeSystem.concept[1].concept[13].display[0]	Patient - Local identifier
CodeSystem.concept[1].concept[13].definition[0]	Patient's identification code other than NHS number.
CodeSystem.concept[1].concept[14].code[0]	P-42
CodeSystem.concept[1].concept[14].display[0]	Patient - ODS code of organisation which assigned local identifier
CodeSystem.concept[1].concept[14].definition[0]	ODS code of the organisation which assigned the local identifier P-16.
CodeSystem.concept[1].concept[15].code[0]	P-17
CodeSystem.concept[1].concept[15].display[0]	Patient - Reason for unavailable NHS number
CodeSystem.concept[1].concept[15].definition[0]	Reason for an NHS number not being provided.
CodeSystem.concept[1].concept[16].code[0]	P-18
CodeSystem.concept[1].concept[16].display[0]	Patient - Relationship to proband
CodeSystem.concept[1].concept[16].definition[0]	This patient's relationship to the primary patient.
CodeSystem.concept[1].concept[17].code[0]	P-19
CodeSystem.concept[1].concept[17].display[0]	Patient - Gender Identity
CodeSystem.concept[1].concept[17].definition[0]	Patient's stated gender, determined by the patient.
CodeSystem.concept[1].concept[18].code[0]	P-20
CodeSystem.concept[1].concept[18].display[0]	Patient - Deceased date
CodeSystem.concept[1].concept[18].definition[0]	Patient's date of death.
CodeSystem.concept[1].concept[19].code[0]	P-21
CodeSystem.concept[1].concept[19].display[0]	Patient - Chromosomal sex
CodeSystem.concept[1].concept[19].definition[0]	Patient's genomic / karyotypic characteristic. Determined by genomic testing.
CodeSystem.concept[1].concept[20].code[0]	P-35
CodeSystem.concept[1].concept[20].display[0]	Patient - Withheld identity reason
CodeSystem.concept[1].concept[20].definition[0]	Confirmation why the patient is withholding identity details.
CodeSystem.concept[1].concept[21].code[0]	P-37
CodeSystem.concept[1].concept[21].display[0]	Patient - Local Pedigree / Family identifier
CodeSystem.concept[1].concept[21].definition[0]	Patient's pedigree or family identifying id.
CodeSystem.concept[1].concept[22].code[0]	P-39
CodeSystem.concept[1].concept[22].display[0]	Patient - Reason for inclusion in genomic test request
CodeSystem.concept[1].concept[22].definition[0]	Reason patient has been included in genomic test request, such as to support proband testing or providing own genomic reporting
CodeSystem.concept[2].code[0]	datagroup-fetus
CodeSystem.concept[2].display[0]	Fetus
CodeSystem.concept[2].definition[0]	Data group - Fetus
CodeSystem.concept[2].concept[0].code[0]	F-1
CodeSystem.concept[2].concept[0].display[0]	Fetus - Local identifier
CodeSystem.concept[2].concept[0].definition[0]	Fetus' identification code other than NHS number.
CodeSystem.concept[2].concept[1].code[0]	F-7
CodeSystem.concept[2].concept[1].display[0]	Fetus - ODS code of organisation which assigned local identifier
CodeSystem.concept[2].concept[1].definition[0]	ODS code of the organisation which assigned the local identifier F-1.
CodeSystem.concept[2].concept[2].code[0]	F-2
CodeSystem.concept[2].concept[2].display[0]	Fetus - Observed sex
CodeSystem.concept[2].concept[2].definition[0]	Fetus' phenotypic sex classification. Estimated physical characteristic. Currently determined by ultrasound. Gender for PLCM.
CodeSystem.concept[2].concept[3].code[0]	F-3
CodeSystem.concept[2].concept[3].display[0]	Fetus - Chromosomal sex
CodeSystem.concept[2].concept[3].definition[0]	Fetus' genomic / karyotypic characteristic. Determined by genomic testing.
CodeSystem.concept[2].concept[4].code[0]	F-6
CodeSystem.concept[2].concept[4].display[0]	Fetus - Life status at time of request
CodeSystem.concept[2].concept[4].definition[0]	Fetus' alive or deceased status details at the point of test ordering.
CodeSystem.concept[2].concept[5].code[0]	F-8
CodeSystem.concept[2].concept[5].display[0]	Fetus - Pregnancy id
CodeSystem.concept[2].concept[5].definition[0]	The id of a given pregnancy which this fetus belongs to.
CodeSystem.concept[3].code[0]	datagroup-test-request
CodeSystem.concept[3].display[0]	Test Request
CodeSystem.concept[3].definition[0]	Data group - Test Request
CodeSystem.concept[3].concept[0].code[0]	TR-2
CodeSystem.concept[3].concept[0].display[0]	Test Request - Payment status
CodeSystem.concept[3].concept[0].definition[0]	How the test request is funded
CodeSystem.concept[3].concept[1].code[0]	TR-4
CodeSystem.concept[3].concept[1].display[0]	Test Request - Requesting reason rare disease
CodeSystem.concept[3].concept[1].definition[0]	The reason for a rare disease genomic test.
CodeSystem.concept[3].concept[2].code[0]	TR-38
CodeSystem.concept[3].concept[2].display[0]	Test Request - Requesting reason cancer
CodeSystem.concept[3].concept[2].definition[0]	The reason for a cancer genomic test.
CodeSystem.concept[3].concept[3].code[0]	TR-5
CodeSystem.concept[3].concept[3].display[0]	Test Request - High level test identifier
CodeSystem.concept[3].concept[3].definition[0]	Legacy high level ids which identify the requested test. Options provided by old Test Directory.
CodeSystem.concept[3].concept[4].code[0]	TR-6
CodeSystem.concept[3].concept[4].display[0]	Test Request - High level test identifier description
CodeSystem.concept[3].concept[4].definition[0]	Legacy high level name of the id requested
CodeSystem.concept[3].concept[5].code[0]	TR-7
CodeSystem.concept[3].concept[5].display[0]	Test Request - Low level test identifier
CodeSystem.concept[3].concept[5].definition[0]	The low level CITT code which identifies the requested test. Options provided by Test Directory (TEST IDENTIFIER OR TEST CODE).
CodeSystem.concept[3].concept[6].code[0]	TR-8
CodeSystem.concept[3].concept[6].display[0]	Test Request - Low level test identifier description
CodeSystem.concept[3].concept[6].definition[0]	The low level CITT name of the considered test.
CodeSystem.concept[3].concept[7].code[0]	TR-9
CodeSystem.concept[3].concept[7].display[0]	Test Request - Low level multipurpose test identifier
CodeSystem.concept[3].concept[7].definition[0]	The low level code which identifies the test to be actioned when the CITT code is multipurpose (CLINICAL INDICATION).
CodeSystem.concept[3].concept[8].code[0]	TR-10
CodeSystem.concept[3].concept[8].display[0]	Test Request - Low level multipurpose test identifier description
CodeSystem.concept[3].concept[8].definition[0]	The low level name of the test to be actioned when the CITT code is multipurpose.
CodeSystem.concept[3].concept[9].code[0]	TR-21
CodeSystem.concept[3].concept[9].display[0]	Test Request - Genomic package id
CodeSystem.concept[3].concept[9].definition[0]	Id of the package requested.
CodeSystem.concept[3].concept[10].code[0]	TR-22
CodeSystem.concept[3].concept[10].display[0]	Test Request - Genomic package name
CodeSystem.concept[3].concept[10].definition[0]	Name of the package requested.
CodeSystem.concept[3].concept[11].code[0]	TR-23
CodeSystem.concept[3].concept[11].display[0]	Test Request - Genomic package version
CodeSystem.concept[3].concept[11].definition[0]	Version of the package requested.
CodeSystem.concept[3].concept[12].code[0]	TR-24
CodeSystem.concept[3].concept[12].display[0]	Test Request - Genomic test id
CodeSystem.concept[3].concept[12].definition[0]	Id of the test requested.
CodeSystem.concept[3].concept[13].code[0]	TR-25
CodeSystem.concept[3].concept[13].display[0]	Test Request - Genomic test name
CodeSystem.concept[3].concept[13].definition[0]	Name of the test requested.
CodeSystem.concept[3].concept[14].code[0]	TR-26
CodeSystem.concept[3].concept[14].display[0]	Test Request - Genomic test version
CodeSystem.concept[3].concept[14].definition[0]	Version of the test requested.
CodeSystem.concept[3].concept[15].code[0]	TR-27
CodeSystem.concept[3].concept[15].display[0]	Test Request - Additional panels
CodeSystem.concept[3].concept[15].definition[0]	Additional panels to test.
CodeSystem.concept[3].concept[16].code[0]	TR-28
CodeSystem.concept[3].concept[16].display[0]	Test request - Target type
CodeSystem.concept[3].concept[16].definition[0]	Type of target to test.
CodeSystem.concept[3].concept[17].code[0]	TR-29
CodeSystem.concept[3].concept[17].display[0]	Test request - Target detail
CodeSystem.concept[3].concept[17].definition[0]	Detail of target to test.
CodeSystem.concept[3].concept[18].code[0]	TR-11
CodeSystem.concept[3].concept[18].display[0]	Test Request - Count of patients to be tested
CodeSystem.concept[3].concept[18].definition[0]	Count of patients to be tested including the proband/primary patient.
CodeSystem.concept[3].concept[19].code[0]	TR-12
CodeSystem.concept[3].concept[19].display[0]	Test Request - Urgency reason
CodeSystem.concept[3].concept[19].definition[0]	The test request urgency reason.
CodeSystem.concept[3].concept[20].code[0]	TR-13
CodeSystem.concept[3].concept[20].display[0]	Test Request - Reanalysis reason
CodeSystem.concept[3].concept[20].definition[0]	The reason reanalysis has been requested.
CodeSystem.concept[3].concept[21].code[0]	TR-14
CodeSystem.concept[3].concept[21].display[0]	Test Request - Detail of reason for request
CodeSystem.concept[3].concept[21].definition[0]	Further detail associated to the reason reanalysis has been requested.
CodeSystem.concept[3].concept[22].code[0]	TR-15
CodeSystem.concept[3].concept[22].display[0]	Test Request - Type of reanalysis
CodeSystem.concept[3].concept[22].definition[0]	The type of reanalysis which has been requested.
CodeSystem.concept[3].concept[23].code[0]	TR-17
CodeSystem.concept[3].concept[23].display[0]	Test Request - Is urgent
CodeSystem.concept[3].concept[23].definition[0]	Confirmation if the test request is urgent.
CodeSystem.concept[3].concept[24].code[0]	TR-35
CodeSystem.concept[3].concept[24].display[0]	Test Request - Purpose of linking
CodeSystem.concept[3].concept[24].definition[0]	The reason a given test request has been linked to another test request.
CodeSystem.concept[3].concept[25].code[0]	TR-36
CodeSystem.concept[3].concept[25].display[0]	Test Request - Central email address for reporting
CodeSystem.concept[3].concept[25].definition[0]	Central email address for contingency in the event of not being able to obtain a report via the requester.
CodeSystem.concept[3].concept[26].code[0]	TR-20
CodeSystem.concept[3].concept[26].display[0]	Test Request - Genomic report delivery method
CodeSystem.concept[3].concept[26].definition[0]	Test Request - Genomic report delivery method
CodeSystem.concept[3].concept[27].code[0]	TR-30
CodeSystem.concept[3].concept[27].display[0]	Test Request - Add private genomic request and report to NHS record
CodeSystem.concept[3].concept[27].definition[0]	Confirmation if the content of a private genomic test request should be added to an NHS record.
CodeSystem.concept[3].concept[28].code[0]	TR-31
CodeSystem.concept[3].concept[28].display[0]	Test Request - Test request form version
CodeSystem.concept[3].concept[28].definition[0]	Version of the test order form completed and submitted.
CodeSystem.concept[3].concept[29].code[0]	TR-32
CodeSystem.concept[3].concept[29].display[0]	Test Request - File / Link to file
CodeSystem.concept[3].concept[29].definition[0]	Upload of a file or a link to a file for adding documents such as previous genomic reports to a test order.
CodeSystem.concept[3].concept[30].code[0]	TR-33
CodeSystem.concept[3].concept[30].display[0]	Test Request - File detail
CodeSystem.concept[3].concept[30].definition[0]	Detail to provide context to an uploaded file or document link.
CodeSystem.concept[3].concept[31].code[0]	TR-34
CodeSystem.concept[3].concept[31].display[0]	Test Request - Clinical utility
CodeSystem.concept[3].concept[31].definition[0]	Clinical benefit to patient of obtaining a requested genomic report.
CodeSystem.concept[3].concept[32].code[0]	TR-39
CodeSystem.concept[3].concept[32].display[0]	Test Request - Linked test request reference
CodeSystem.concept[3].concept[32].definition[0]	The reference to any associated test requests
CodeSystem.concept[4].code[0]	datagroup-ngrl-consent
CodeSystem.concept[4].display[0]	NGRL-consent
CodeSystem.concept[4].definition[0]	Data group - NGRL consent
CodeSystem.concept[4].concept[0].code[0]	NGRL-1
CodeSystem.concept[4].concept[0].display[0]	NGRL consent - Date of NGRL consent
CodeSystem.concept[4].concept[0].definition[0]	The date NGRL consent was provided.
CodeSystem.concept[4].concept[1].code[0]	NGRL-2
CodeSystem.concept[4].concept[1].display[0]	NGRL consent - Patient has made their own choice to consent to the NGRL
CodeSystem.concept[4].concept[1].definition[0]	Confirmation if the patient to be tested has provided NGRL consent themselves.
CodeSystem.concept[4].concept[2].code[0]	NGRL-3
CodeSystem.concept[4].concept[2].display[0]	NGRL consent - Patient representative name (if patient cannot make their own choice)
CodeSystem.concept[4].concept[2].definition[0]	The name of the patient representative.
CodeSystem.concept[4].concept[3].code[0]	NGRL-4
CodeSystem.concept[4].concept[3].display[0]	NGRL consent - I confirm that the patient (or their representative) agree to have their genomic and healthcare data used for research
CodeSystem.concept[4].concept[3].definition[0]	The outcome of the patient or their representative’s choice in consenting to including their data used for research in the NGRL.
CodeSystem.concept[4].concept[4].code[0]	NGRL-5
CodeSystem.concept[4].concept[4].display[0]	NGRL consent - NGRL consent document link
CodeSystem.concept[4].concept[4].definition[0]	A URL where a copy of a completed NGRL consent form may be found.
CodeSystem.concept[5].code[0]	datagroup-primary-sample
CodeSystem.concept[5].display[0]	Primary Sample
CodeSystem.concept[5].definition[0]	Data group - Primary Sample
CodeSystem.concept[5].concept[0].code[0]	PS-2
CodeSystem.concept[5].concept[0].display[0]	Primary Sample - Local identifier
CodeSystem.concept[5].concept[0].definition[0]	Local ids applied to a sample
CodeSystem.concept[5].concept[1].code[0]	PS-3
CodeSystem.concept[5].concept[1].display[0]	Primary Sample - ODS code of organisation which assigned local id
CodeSystem.concept[5].concept[1].definition[0]	ODS code of the organisation which assigned the local sample id.
CodeSystem.concept[5].concept[2].code[0]	PS-10
CodeSystem.concept[5].concept[2].display[0]	Primary Sample - Obtained date
CodeSystem.concept[5].concept[2].definition[0]	Date at which a specimen/biopsy was obtained from patient.
CodeSystem.concept[5].concept[3].code[0]	PS-11
CodeSystem.concept[5].concept[3].display[0]	Primary Sample - Primary sample
CodeSystem.concept[5].concept[3].definition[0]	The primary sample material.
CodeSystem.concept[5].concept[4].code[0]	PS-12
CodeSystem.concept[5].concept[4].display[0]	Primary Sample - Primary sample state
CodeSystem.concept[5].concept[4].definition[0]	The state of the primary sample.
CodeSystem.concept[5].concept[5].code[0]	PS-25
CodeSystem.concept[5].concept[5].display[0]	Primary Sample - Preservative/Container
CodeSystem.concept[5].concept[5].definition[0]	How the primary sample is preserved.
CodeSystem.concept[5].concept[6].code[0]	PS-30
CodeSystem.concept[5].concept[6].display[0]	Primary Sample - Block identifier
CodeSystem.concept[5].concept[6].definition[0]	Sample block identifier
CodeSystem.concept[5].concept[7].code[0]	PS-31
CodeSystem.concept[5].concept[7].display[0]	Primary Sample - Fixative type
CodeSystem.concept[5].concept[7].definition[0]	Sample fixative type
CodeSystem.concept[5].concept[8].code[0]	PS-32
CodeSystem.concept[5].concept[8].display[0]	Primary Sample - Hours to fixation
CodeSystem.concept[5].concept[8].definition[0]	Sample hours to fixation
CodeSystem.concept[5].concept[9].code[0]	PS-33
CodeSystem.concept[5].concept[9].display[0]	Primary Sample - Hours in fixative
CodeSystem.concept[5].concept[9].definition[0]	Sample hours in fixative
CodeSystem.concept[5].concept[10].code[0]	PS-34
CodeSystem.concept[5].concept[10].display[0]	Primary Sample - Tumour enrichment method
CodeSystem.concept[5].concept[10].definition[0]	Method used for tumour enrichment.
CodeSystem.concept[5].concept[11].code[0]	PS-13
CodeSystem.concept[5].concept[11].display[0]	Primary Sample - Necrosis
CodeSystem.concept[5].concept[11].definition[0]	% necrotic (dead) cells in primary sample.
CodeSystem.concept[5].concept[12].code[0]	PS-14
CodeSystem.concept[5].concept[12].display[0]	Primary Sample - Nucleated cell count
CodeSystem.concept[5].concept[12].definition[0]	Nucleated (with nucleous) cell (non tumour and tumour) count in the primary sample (Solid Tumour and Haem-Onc).
CodeSystem.concept[5].concept[13].code[0]	PS-15
CodeSystem.concept[5].concept[13].display[0]	Primary Sample - Tumour nuclear content in whole section
CodeSystem.concept[5].concept[13].definition[0]	Neoplastic (tumour) cell content in the primary sample whole section(Solid Tumour) - sourced at local lab. (%)
CodeSystem.concept[5].concept[14].code[0]	PS-26
CodeSystem.concept[5].concept[14].display[0]	Primary Sample - Tumour nuclear content in marked area
CodeSystem.concept[5].concept[14].definition[0]	Neoplastic (tumour) cell content in the primary sample marked area(Solid Tumour) - sourced at local lab. (%)
CodeSystem.concept[5].concept[15].code[0]	PS-17
CodeSystem.concept[5].concept[15].display[0]	Primary Sample - Solid tumour morphology
CodeSystem.concept[5].concept[15].definition[0]	The histology and likely course of development of a tumour.
CodeSystem.concept[5].concept[16].code[0]	PS-18
CodeSystem.concept[5].concept[16].display[0]	Primary Sample - Solid tumour topography
CodeSystem.concept[5].concept[16].definition[0]	The tumour sample site. e.g. from colon, stomach etc.
CodeSystem.concept[5].concept[17].code[0]	PS-29
CodeSystem.concept[5].concept[17].display[0]	Primary Sample - Is biopsy
CodeSystem.concept[5].concept[17].definition[0]	Primary Sample - Is biopsy
CodeSystem.concept[5].concept[18].code[0]	PS-19
CodeSystem.concept[5].concept[18].display[0]	Primary Sample - Biopsy site
CodeSystem.concept[5].concept[18].definition[0]	Digital confirmation that the sample is a biopsy.
CodeSystem.concept[5].concept[19].code[0]	PS-21
CodeSystem.concept[5].concept[19].display[0]	Primary Sample - Observed maternal cell contamination (MCC)
CodeSystem.concept[5].concept[19].definition[0]	An observed outcome which may indicate MCC
CodeSystem.concept[5].concept[20].code[0]	PS-27
CodeSystem.concept[5].concept[20].display[0]	Primary Sample - Test confirmed maternal cell contamination (MCC)
CodeSystem.concept[5].concept[20].definition[0]	Analytically confirmed MCC levels
CodeSystem.concept[5].concept[21].code[0]	PS-22
CodeSystem.concept[5].concept[21].display[0]	Primary Sample - Option for all products of conception
CodeSystem.concept[5].concept[21].definition[0]	Primary Sample - Option for all products of conception
CodeSystem.concept[5].concept[22].code[0]	PS-23
CodeSystem.concept[5].concept[22].display[0]	Primary Sample - Blasts %
CodeSystem.concept[5].concept[22].definition[0]	Future management for products of conception.
CodeSystem.concept[5].concept[23].code[0]	PS-24
CodeSystem.concept[5].concept[23].display[0]	Primary Sample - High infection risk reason
CodeSystem.concept[5].concept[23].definition[0]	The high contamination risk reason for a primary sample.
CodeSystem.concept[5].concept[24].code[0]	PS-28
CodeSystem.concept[5].concept[24].display[0]	Primary Sample - Patient life status at the time of collection
CodeSystem.concept[5].concept[24].definition[0]	If the patient was alive or deceased at the point of collecting a sample.
CodeSystem.concept[5].concept[25].code[0]	PS-35
CodeSystem.concept[5].concept[25].display[0]	Primary Sample - Solid tumour type
CodeSystem.concept[5].concept[25].definition[0]	The origin or context of a tumour sample.
CodeSystem.concept[6].code[0]	datagroup-patient-clinical-information
CodeSystem.concept[6].display[0]	Patient Clinical Information
CodeSystem.concept[6].definition[0]	Data group - Patient Clinical Information
CodeSystem.concept[6].concept[0].code[0]	PCI-1
CodeSystem.concept[6].concept[0].display[0]	Patient clinical information - Genomic Ethnicity
CodeSystem.concept[6].concept[0].definition[0]	Patient's ethnicity where 'Patient - Ethnicity field' doesn't provide an adequate description. E.g Ashkenazi Jewish
CodeSystem.concept[6].concept[1].code[0]	PCI-2
CodeSystem.concept[6].concept[1].display[0]	Patient clinical information - Disease Status
CodeSystem.concept[6].concept[1].definition[0]	If the patient is affected, unaffected, or it is unknown.
CodeSystem.concept[6].concept[2].code[0]	PCI-4
CodeSystem.concept[6].concept[2].display[0]	Patient clinical information - Age at disease onset
CodeSystem.concept[6].concept[2].definition[0]	The age when a change in patients' health was first noted in line with suspected diagnosis.
CodeSystem.concept[6].concept[3].code[0]	PCI-5
CodeSystem.concept[6].concept[3].display[0]	Patient clinical information - Known/Suspected Disease
CodeSystem.concept[6].concept[3].definition[0]	Disease a patient is believed, known to have, or be at risk of developing.
CodeSystem.concept[6].concept[4].code[0]	PCI-6
CodeSystem.concept[6].concept[4].display[0]	Patient clinical information - Phenotypic details
CodeSystem.concept[6].concept[4].definition[0]	The HPO (or alternative ontology as appropriate) term names for the observable disease traits.
CodeSystem.concept[6].concept[5].code[0]	PCI-7
CodeSystem.concept[6].concept[5].display[0]	Patient clinical information - Symptoms
CodeSystem.concept[6].concept[5].definition[0]	The patient's symptoms
CodeSystem.concept[6].concept[6].code[0]	PCI-10
CodeSystem.concept[6].concept[6].display[0]	Patient clinical information - Count of tumours
CodeSystem.concept[6].concept[6].definition[0]	How many tumours the patient has.
CodeSystem.concept[6].concept[7].code[0]	PCI-11
CodeSystem.concept[6].concept[7].display[0]	Patient clinical information - Site of tumour
CodeSystem.concept[6].concept[7].definition[0]	Location of the tumours on the body.
CodeSystem.concept[6].concept[8].code[0]	PCI-14
CodeSystem.concept[6].concept[8].display[0]	Patient clinical information - Tumour sites - Body image diagram
CodeSystem.concept[6].concept[8].definition[0]	Image attachment of body with tumour sites highlighted.
CodeSystem.concept[6].concept[9].code[0]	PCI-15
CodeSystem.concept[6].concept[9].display[0]	Patient clinical information - Pedigree details / Relevant family history
CodeSystem.concept[6].concept[9].definition[0]	The patient's pedigree/family history details (inc family history of cancer).
CodeSystem.concept[6].concept[10].code[0]	PCI-16
CodeSystem.concept[6].concept[10].display[0]	Patient clinical information - Pedigree diagram
CodeSystem.concept[6].concept[10].definition[0]	Image attachment of pedigree details
CodeSystem.concept[6].concept[11].code[0]	PCI-17
CodeSystem.concept[6].concept[11].display[0]	Patient clinical information - Laterality of hearing loss
CodeSystem.concept[6].concept[11].definition[0]	Laterality of the hearing loss i.e. bilateral or unilateral.
CodeSystem.concept[6].concept[12].code[0]	PCI-18
CodeSystem.concept[6].concept[12].display[0]	Patient clinical information - Fetal haemoglobinopathy maternal screening genotype
CodeSystem.concept[6].concept[12].definition[0]	Maternal screening genotype for haemoglobinopathy testing.
CodeSystem.concept[6].concept[13].code[0]	PCI-21
CodeSystem.concept[6].concept[13].display[0]	Patient clinical information - Legal considerations
CodeSystem.concept[6].concept[13].definition[0]	Legal considerations for a given request.
CodeSystem.concept[6].concept[14].code[0]	PCI-22
CodeSystem.concept[6].concept[14].display[0]	Patient clinical information - Fetal haemoglobinopathy paternal screening genotype
CodeSystem.concept[6].concept[14].definition[0]	Paternal screening genotype for haemoglobinopathy testing
CodeSystem.concept[6].concept[15].code[0]	PCI-23
CodeSystem.concept[6].concept[15].display[0]	Patient clinical information - Expected Maternity Unit - Organisation name
CodeSystem.concept[6].concept[15].definition[0]	Requesting clinician's organisation name.
CodeSystem.concept[6].concept[16].code[0]	PCI-24
CodeSystem.concept[6].concept[16].display[0]	Patient clinical information - Expected Maternity Unit - Organisation address
CodeSystem.concept[6].concept[16].definition[0]	Requesting clinician's organisation address.
CodeSystem.concept[6].concept[17].code[0]	PCI-25
CodeSystem.concept[6].concept[17].display[0]	Patient clinical information - Expected Maternity Unit - Organisation ODS code
CodeSystem.concept[6].concept[17].definition[0]	Requesting clinician's organisation ODS code.
CodeSystem.concept[6].concept[18].code[0]	PCI-26
CodeSystem.concept[6].concept[18].display[0]	Patient clinical information - Expected Maternity Unit - Department name
CodeSystem.concept[6].concept[18].definition[0]	Requesting clinician's department name.
CodeSystem.concept[6].concept[19].code[0]	PCI-27
CodeSystem.concept[6].concept[19].display[0]	Patient clinical information - Growth history
CodeSystem.concept[6].concept[19].definition[0]	Summary passage of text to highlight patient centile history e.g. head circumference, weight, etc.
CodeSystem.concept[6].concept[20].code[0]	PCI-28
CodeSystem.concept[6].concept[20].display[0]	Patient clinical information - Severity of hearing loss
CodeSystem.concept[6].concept[20].definition[0]	Free text regarding hearing loss
CodeSystem.concept[6].concept[21].code[0]	PCI-29
CodeSystem.concept[6].concept[21].display[0]	Patient clinical information - Retinal degeneration
CodeSystem.concept[6].concept[21].definition[0]	Free text regarding retinal degeneration
CodeSystem.concept[6].concept[22].code[0]	PCI-30
CodeSystem.concept[6].concept[22].display[0]	Patient clinical information - Risk factors
CodeSystem.concept[6].concept[22].definition[0]	Toxic medication - Prematurity (risk factor for hearing loss) e.g. Baby early birth - Ototoxic medication.
CodeSystem.concept[6].concept[23].code[0]	PCI-31
CodeSystem.concept[6].concept[23].display[0]	Patient clinical information - Suspected inborn error type(s)
CodeSystem.concept[6].concept[23].definition[0]	Suspected inborn error type(s)
CodeSystem.concept[6].concept[24].code[0]	PCI-32
CodeSystem.concept[6].concept[24].display[0]	Patient clinical information - Abnormal infection history site
CodeSystem.concept[6].concept[24].definition[0]	Abnormal infection history site organism
CodeSystem.concept[6].concept[25].code[0]	PCI-33
CodeSystem.concept[6].concept[25].display[0]	Patient clinical information - Abnormal infection history site organism
CodeSystem.concept[6].concept[25].definition[0]	Abnormal infection history site organism
CodeSystem.concept[6].concept[26].code[0]	PCI-34
CodeSystem.concept[6].concept[26].display[0]	Is on ig replacement
CodeSystem.concept[6].concept[26].definition[0]	If the patient is on immunoglobin replacement treatment.
CodeSystem.concept[6].concept[27].code[0]	PCI-35
CodeSystem.concept[6].concept[27].display[0]	Patient clinical information - Current and previous treatment detail
CodeSystem.concept[6].concept[27].definition[0]	Detail regarding relevant current and previous medical treatments.
CodeSystem.concept[6].concept[28].code[0]	PCI-36
CodeSystem.concept[6].concept[28].display[0]	Patient clinical information - Pregnancy status
CodeSystem.concept[6].concept[28].definition[0]	Patient`s pregnancy status
CodeSystem.concept[6].concept[29].code[0]	PCI-37
CodeSystem.concept[6].concept[29].display[0]	Patient clinical information - Pregnancy type
CodeSystem.concept[6].concept[29].definition[0]	Type of conception
CodeSystem.concept[6].concept[30].code[0]	PCI-38
CodeSystem.concept[6].concept[30].display[0]	Patient clinical information - Pregnancy gestation period
CodeSystem.concept[6].concept[30].definition[0]	Patient's term of active pregnancy at point of test request.
CodeSystem.concept[6].concept[31].code[0]	PCI-39
CodeSystem.concept[6].concept[31].display[0]	Patient clinical information - Fetal gestation
CodeSystem.concept[6].concept[31].definition[0]	Stage during patient pregnancy at which it terminated.
CodeSystem.concept[6].concept[32].code[0]	PCI-40
CodeSystem.concept[6].concept[32].display[0]	Patient clinical information - Estimated delivery date (EDD)
CodeSystem.concept[6].concept[32].definition[0]	Patient's estimated delivery date.
CodeSystem.concept[6].concept[33].code[0]	PCI-41
CodeSystem.concept[6].concept[33].display[0]	Patient clinical information - IVF age of egg donor
CodeSystem.concept[6].concept[33].definition[0]	The age of the patient who donated the egg at the time of donation.
CodeSystem.concept[6].concept[34].code[0]	PCI-42
CodeSystem.concept[6].concept[34].display[0]	Patient clinical information - Had transplant
CodeSystem.concept[6].concept[34].definition[0]	Has the patient ever had a transplant.
CodeSystem.concept[6].concept[35].code[0]	PCI-43
CodeSystem.concept[6].concept[35].display[0]	Patient clinical information - Type of transplant
CodeSystem.concept[6].concept[35].definition[0]	What type of transplant the patient had.
CodeSystem.concept[6].concept[36].code[0]	PCI-44
CodeSystem.concept[6].concept[36].display[0]	Patient clinical information - Transplant date
CodeSystem.concept[6].concept[36].definition[0]	When the patient had the transplant.
CodeSystem.concept[6].concept[37].code[0]	PCI-45
CodeSystem.concept[6].concept[37].display[0]	Patient clinical information - Had transfusion in the last 6 weeks
CodeSystem.concept[6].concept[37].definition[0]	Has the patient had a transfusion in the last 6 weeks.
CodeSystem.concept[6].concept[38].code[0]	PCI-46
CodeSystem.concept[6].concept[38].display[0]	Patient clinical information - Type of transfusion
CodeSystem.concept[6].concept[38].definition[0]	What type of transfusion the patient has had.
CodeSystem.concept[6].concept[39].code[0]	PCI-47
CodeSystem.concept[6].concept[39].display[0]	Patient clinical information - Transfusion date
CodeSystem.concept[6].concept[39].definition[0]	When the patient had the transfusion.
CodeSystem.concept[6].concept[40].code[0]	PCI-48
CodeSystem.concept[6].concept[40].display[0]	Patient clinical information - Height (m)
CodeSystem.concept[6].concept[40].definition[0]	Patient's height.
CodeSystem.concept[7].code[0]	datagroup-miscellaneous
CodeSystem.concept[7].display[0]	Miscellaneous
CodeSystem.concept[7].definition[0]	Data group - Miscellaneous
CodeSystem.concept[7].concept[0].code[0]	MIS-1
CodeSystem.concept[7].concept[0].display[0]	Further supporting information
CodeSystem.concept[7].concept[0].definition[0]	Supporting information which has not been captured elsewhere.
CodeSystem.concept[8].code[0]	datagroup-hospital-encounter
CodeSystem.concept[8].display[0]	Hospital encounter
CodeSystem.concept[8].definition[0]	Data group - Hospital encounter
CodeSystem.concept[8].concept[0].code[0]	HE-1
CodeSystem.concept[8].concept[0].display[0]	Treatment function code (TFC)
CodeSystem.concept[8].concept[0].definition[0]	The identifier for the clinical specialty or service under which the patient is being treated.
CodeSystem.concept[8].concept[1].code[0]	HE-2
CodeSystem.concept[8].concept[1].display[0]	Hospital provider spell identifier
CodeSystem.concept[8].concept[1].definition[0]	The identifier for the patient's continuous period of care in a hospital provider setting, from admission to discharge.
CodeSystem.concept[8].concept[2].code[0]	HE-3
CodeSystem.concept[8].concept[2].display[0]	Outpatient attendance identifier
CodeSystem.concept[8].concept[2].definition[0]	The identifier for the patient's specific outpatient appointment at which the genomic test may have been ordered.
CodeSystem.concept[8].concept[3].code[0]	HE-4
CodeSystem.concept[8].concept[3].display[0]	Hospital point of delivery code
CodeSystem.concept[8].concept[3].definition[0]	The identifier that defines the type of care setting in which the genomic test was requested.

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