FHIR Genomics Implementation Guide

Notice

Important: This guidance is under active development by NHS England and content may be added or updated on a regular basis.
This Implementation Guide is currently in Draft and SHOULD NOT be used for development or active implementation without express direction from the NHS England Genomics Unit.

Patient-JamesMetcalfe-Example

Example of a patient resource with additional information attached, linked to a PDS record.

Patient

id : Patient-JamesMetcalfe-Example

extension

url : https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex

value

coding

system : http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender

code : M

display : Male

extension

url : https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory

value

coding

system : https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland

code : A

display : White - British

identifier

system : https://fhir.nhs.uk/Id/nhs-number

value : 7449306524

extension

url : https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus

value

coding

system : https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland

version : 2.2.0

code : 01

display : Number present and verified

identifier

system : urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24

value : RPA17643

assigner

identifier

system : https://fhir.nhs.uk/Id/ods-organization-code

value : RPA02

name

given : James

family : Metcalfe

gender : male

birthDate : 2013-10-10

deceased : False

address

line : 9 Boxhill Hill,

line : Medway

city : Kent

postalCode : GH20 7PF

generalPractitioner

identifier

system : https://fhir.hl7.org.uk/Id/gmp-number

value : G9999999

display : Dr. Aero Smith

generalPractitioner

identifier

system : https://fhir.hl7.org.uk/Id/ODS-code

value : TP

display : Test Practice

link

other

reference : https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/7449306524

type : seealso

{
    "resourceType": "Patient",
    "id": "Patient-JamesMetcalfe-Example",
    "extension":  [
        {
            "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex",
            "valueCodeableConcept": {
                "coding":  [
                    {
                        "system": "http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender",
                        "code": "M",
                        "display": "Male"
                    }
                ]
            }
        },
        {
            "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory",
            "valueCodeableConcept": {
                "coding":  [
                    {
                        "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland",
                        "code": "A",
                        "display": "White - British"
                    }
                ]
            }
        }
    ],
    "identifier":  [
        {
            "system": "https://fhir.nhs.uk/Id/nhs-number",
            "value": "7449306524",
            "extension":  [
                {
                    "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus",
                    "valueCodeableConcept": {
                        "coding":  [
                            {
                                "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland",
                                "version": "2.2.0",
                                "code": "01",
                                "display": "Number present and verified"
                            }
                        ]
                    }
                }
            ]
        },
        {
            "system": "urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24",
            "value": "RPA17643",
            "assigner": {
                "identifier": {
                    "system": "https://fhir.nhs.uk/Id/ods-organization-code",
                    "value": "RPA02"
                }
            }
        }
    ],
    "name":  [
        {
            "given":  [
                "James"
            ],
            "family": "Metcalfe"
        }
    ],
    "gender": "male",
    "birthDate": "2013-10-10",
    "deceasedBoolean": false,
    "address":  [
        {
            "line":  [
                "9 Boxhill Hill,",
                "Medway"
            ],
            "city": "Kent",
            "postalCode": "GH20 7PF"
        }
    ],
    "generalPractitioner":  [
        {
            "identifier": {
                "system": "https://fhir.hl7.org.uk/Id/gmp-number",
                "value": "G9999999"
            },
            "display": "Dr. Aero Smith"
        },
        {
            "identifier": {
                "system": "https://fhir.hl7.org.uk/Id/ODS-code",
                "value": "TP"
            },
            "display": "Test Practice"
        }
    ],
    "link":  [
        {
            "other": {
                "reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/7449306524"
            },
            "type": "seealso"
        }
    ]
}

<Patient xmlns="http://hl7.org/fhir">
    <id value="Patient-JamesMetcalfe-Example" />
    <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex">
        <valueCodeableConcept>
            <coding>
                <system value="http://terminology.hl7.org/CodeSystem/v3-AdministrativeGender" />
                <code value="M" />
                <display value="Male" />
            </coding>
        </valueCodeableConcept>
    </extension>
    <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory">
        <valueCodeableConcept>
            <coding>
                <system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland" />
                <code value="A" />
                <display value="White - British" />
            </coding>
        </valueCodeableConcept>
    </extension>
    <identifier>
        <extension url="https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus">
            <valueCodeableConcept>
                <coding>
                    <system value="https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland" />
                    <version value="2.2.0" />
                    <code value="01" />
                    <display value="Number present and verified" />
                </coding>
            </valueCodeableConcept>
        </extension>
        <system value="https://fhir.nhs.uk/Id/nhs-number" />
        <value value="7449306524" />
    </identifier>
    <identifier>
        <system value="urn:oid:2.16.840.1.113883.2.1.3.2.4.18.24" />
        <value value="RPA17643" />
        <assigner>
            <identifier>
                <system value="https://fhir.nhs.uk/Id/ods-organization-code" />
                <value value="RPA02" />
            </identifier>
        </assigner>
    </identifier>
    <name>
        <family value="Metcalfe" />
        <given value="James" />
    </name>
    <gender value="male" />
    <birthDate value="2013-10-10" />
    <deceasedBoolean value="false" />
    <address>
        <line value="9 Boxhill Hill," />
        <line value="Medway" />
        <city value="Kent" />
        <postalCode value="GH20 7PF" />
    </address>
    <generalPractitioner>
        <identifier>
            <system value="https://fhir.hl7.org.uk/Id/gmp-number" />
            <value value="G9999999" />
        </identifier>
        <display value="Dr. Aero Smith" />
    </generalPractitioner>
    <generalPractitioner>
        <identifier>
            <system value="https://fhir.hl7.org.uk/Id/ODS-code" />
            <value value="TP" />
        </identifier>
        <display value="Test Practice" />
    </generalPractitioner>
    <link>
        <other>
            <reference value="https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/7449306524" />
        </other>
        <type value="seealso" />
    </link>
</Patient>

Notice

Patient-JamesMetcalfe-Example

Propose a change to Patient-JamesMetcalfe-Example