Sequence Phase Relationship - Observation


Beschreibung

Zeigt an, ob zwei Varianten in Cis- (gleicher Strang) oder Trans- (entgegengesetzter Strang) Beziehung zueinander stehen.


Das Profil entspricht Sequence Phase Relationship aus HL7 Genomics Reporting Implementation Guide.


Diff

secondary-findingI0..1Extension(CodeableConcept)
body-structureI0..1Extension(Reference(BodyStructure))
identifierΣ0..*Identifier
basedOnΣ I0..*Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest)
partOfΣ I0..*Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
codingΣ1..*Coding
textΣ0..1string
codeΣ1..1CodeableConcept
subjectΣ I0..1Reference(Patient | Group | Device | Location)
focusΣ I0..*Reference(Resource)
encounterΣ I0..1Reference(Encounter)
effectiveDateTimedateTime
effectivePeriodPeriod
effectiveTimingTiming
effectiveInstantinstant
issuedΣ0..1instant
performerΣ I0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
note0..*Coded Annotation
bodySite0..1CodeableConcept
method0..1CodeableConceptBinding
specimenI0..1Reference(Specimen)
deviceI0..1Reference(Device | DeviceMetric)
lowI0..1SimpleQuantity
highI0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
ageI0..1Range
text0..1string
hasMemberΣ I0..*Reference(Observation | QuestionnaireResponse | MolecularSequence)
variantΣ I0..*Reference(Variant)
haplotypeΣ I0..*Reference(Haplotype)
codeΣ1..1CodeableConcept
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueStringstring
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)


Snapshot

secondary-findingI0..1Extension(CodeableConcept)
body-structureI0..1Extension(Reference(BodyStructure))
identifierΣ0..*Identifier
basedOnΣ I0..*Reference(CarePlan | DeviceRequest | ImmunizationRecommendation | MedicationRequest | NutritionOrder | ServiceRequest)
partOfΣ I0..*Reference(MedicationAdministration | MedicationDispense | MedicationStatement | Procedure | Immunization | ImagingStudy)
statusΣ ?!1..1codeBinding
codingΣ1..*Coding
textΣ0..1string
codeΣ1..1CodeableConcept
subjectΣ I0..1Reference(Patient | Group | Device | Location)
focusΣ I0..*Reference(Resource)
encounterΣ I0..1Reference(Encounter)
effectiveDateTimedateTime
effectivePeriodPeriod
effectiveTimingTiming
effectiveInstantinstant
issuedΣ0..1instant
performerΣ I0..*Reference(Practitioner | PractitionerRole | Organization | CareTeam | Patient | RelatedPerson)
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
note0..*Coded Annotation
bodySite0..1CodeableConcept
method0..1CodeableConceptBinding
specimenI0..1Reference(Specimen)
deviceI0..1Reference(Device | DeviceMetric)
lowI0..1SimpleQuantity
highI0..1SimpleQuantity
type0..1CodeableConceptBinding
appliesTo0..*CodeableConcept
ageI0..1Range
text0..1string
hasMemberΣ I0..*Reference(Observation | QuestionnaireResponse | MolecularSequence)
variantΣ I0..*Reference(Variant)
haplotypeΣ I0..*Reference(Haplotype)
codeΣ1..1CodeableConcept
valueQuantityQuantity
valueCodeableConceptCodeableConcept
valueStringstring
valueBooleanboolean
valueIntegerinteger
valueRangeRange
valueRatioRatio
valueSampledDataSampledData
valueTimetime
valueDateTimedateTime
valuePeriodPeriod
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueStringstring
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)
codeΣ1..1CodeableConcept
valueCodeableConceptCodeableConcept
dataAbsentReasonI0..1CodeableConceptBinding
interpretation0..*CodeableConceptBinding
referenceRange0..*see (referenceRange)


Examples

{
    "resourceType": "Observation",
    "id": "SequencePhaseRelationExample1",
    "meta": {
        "profile":  [
            "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship"
        ]
    },
    "text": {
        "status": "generated",
        --- We have skipped the narrative for better readability of the resource ---
    },
    "status": "final",
    "category":  [
        {
            "coding":  [
                {
                    "system": "http://terminology.hl7.org/CodeSystem/observation-category",
                    "code": "laboratory"
                }
            ]
        }
    ],
    "code": {
        "coding":  [
            {
                "system": "http://loinc.org",
                "code": "82120-7"
            }
        ]
    },
    "issued": "2019-03-05T16:04:44+00:00",
    "valueCodeableConcept": {
        "coding":  [
            {
                "system": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/SequencePhaseRelationshipCS",
                "code": "Cis",
                "display": "Cis"
            }
        ]
    },
    "derivedFrom":  [
        {
            "reference": "Observation/VariantExample1"
        },
        {
            "reference": "Observation/VariantExample2"
        }
    ]
}