<status value="draft" /> <experimental value="false" /> <purpose value="Specimen for genomics" /> <kind value="resource" /> <abstract value="false" /> <type value="Specimen" /> <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Specimen" /> <derivation value="constraint" /> <snapshot /> <differential> <element id="Specimen.id"> <path value="Specimen.id" /> <short value="Logical id for the specimen resource" /> <definition value="The logical id for the specimen resource, as used in the URL for the resource. Once assigned, this value never changes." /> </element> <element id="Specimen.meta.id"> <path value="Specimen.meta.id" /> <min value="1" /> </element> <element id="Specimen.text"> <path value="Specimen.text" /> <short value="Text summary of the resource, for human consumption" /> </element> <element id="Specimen.extension"> <path value="Specimen.extension" /> <slicing> <discriminator> <type value="value" /> <path value="url" /> </discriminator> <rules value="open" /> </slicing> </element> <element id="Specimen.extension:tumorID"> <path value="Specimen.extension" /> <sliceName value="tumorID" /> <short value="Identifies Tumor ID" /> <definition value="Identifies Tumor ID" /> <min value="0" /> <max value="1" /> <type> <code value="Extension" /> <profile value="https://simplifier.net/genomicsfhirprofiles/genomics-extension-tumourid-1" /> </type> </element> <element id="Specimen.identifier"> <path value="Specimen.identifier" /> <short value="Sample Identifier" /> <definition value="Sample Identifier" /> <comment value="Repeating element / used for sample ID from NGIS, and Accession ID from Labs" /> <min value="1" /> </element> <element id="Specimen.identifier.value"> <path value="Specimen.identifier.value" /> <short value="Unique sample identifier" /> <definition value="Unique sample identifier" /> <min value="1" /> </element> <element id="Specimen.type"> <path value="Specimen.type" /> <comment value="Maps from Questionnaire" /> </element> <element id="Specimen.type.coding.system"> <path value="Specimen.type.coding.system" /> <short value="Identity of the coding system" /> <min value="1" /> </element> <element id="Specimen.type.coding.code"> <path value="Specimen.type.coding.code" /> <min value="1" /> </element> <element id="Specimen.type.coding.display"> <extension url="http://hl7.org/fhir/StructureDefinition/elementdefinition-translatable"> <valueBoolean value="true" /> </extension> <path value="Specimen.type.coding.display" /> <short value="Text description of code" /> </element> <element id="Specimen.subject"> <path value="Specimen.subject" /> <short value="Where the specimen came from." /> <definition value="Where the specimen came from. Reference Link to Patient Resource in API call." /> <type> <code value="Reference" /> <targetProfile value="http://hl7.org/fhir/StructureDefinition/Patient" /> <aggregation value="contained" /> </type> </element> <element id="Specimen.collection.collected[x]:collectedDateTime"> <path value="Specimen.collection.collectedDateTime" /> <sliceName value="collectedDateTime" /> <type> <code value="dateTime" /> </type> </element> <element id="Specimen.collection.method.coding"> <path value="Specimen.collection.method.coding" /> <short value="DNA extraction Protocol CodesetValue" /> <min value="1" /> <max value="1" /> </element> <element id="Specimen.collection.method.coding.system"> <path value="Specimen.collection.method.coding.system" /> <comment value="URI for terminology system definition DNA extraction ProtocolURI for terminology system definition" /> <min value="1" /> </element> <element id="Specimen.collection.method.coding.code"> <path value="Specimen.collection.method.coding.code" /> <short value="DNA extraction Protocol code" /> <definition value="DNA extraction Protocol code" /> <comment value="Populated by GLH DNA Extraction protocol value Note that FHIR strings may not exceed 1MB in size" /> <min value="1" /> </element> <element id="Specimen.collection.method.coding.display"> <extension url="http://hl7.org/fhir/StructureDefinition/elementdefinition-translatable"> <valueBoolean value="true" /> </extension> <path value="Specimen.collection.method.coding.display" /> <short value="Text representation of code value" /> <comment value="Is there a text description of selection in database? Note that FHIR strings may not exceed 1MB in size" /> </element> <element id="Specimen.collection.bodySite"> <path value="Specimen.collection.bodySite" /> <comment value="How does this relate to Bodysite information collected by NGIS?" /> </element> <element id="Specimen.collection.bodySite.coding.system"> <path value="Specimen.collection.bodySite.coding.system" /> <min value="1" /> </element> <element id="Specimen.collection.bodySite.coding.code"> <path value="Specimen.collection.bodySite.coding.code" /> <short value="Prolonged Sample Storage Protocol code" /> <min value="1" /> </element> </differential> </StructureDefinition>