<StructureDefinition xmlns="http://hl7.org/fhir">
  <url value="https://karolinskafhirserver.org/fhir/StructureDefinition/KarolinskaLibraryPreperation" />
  <version value="1.0.0-alpha.1" />
  <name value="KarolinskaGenomicLibraryPreparation" />
  <title value="Karolinska Genomic Library Preparation" />
  <status value="draft" />
  <description value="A profile on the procedure resource. It is used to represent the library preperation procedure. It is part of the Laboratory process of the genemoic study performed and containes detaild on what was performed on the sample/specimen during this procedure." />
  <purpose value="The purpose of this profile is to be part of the MVP-GDR project with the goal to evaluate FHIR as a standard to meet our needs for genomic data.&#xD;&#xA;It should therefore be known that the information model itself has been created for the purpose of performing this evaluation. The information model is therefore NOT ready for implementation in a production environment to store resource data." />
  <fhirVersion value="4.0.1" />
  <kind value="resource" />
  <abstract value="false" />
  <type value="Procedure" />
  <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Procedure" />
  <derivation value="constraint" />
  <differential>
    <element id="Procedure.extension:panel-name">
      <path value="Procedure.extension" />
      <sliceName value="panel-name" />
      <definition value="The name of the panel used during the library preperation" />
      <type>
        <code value="Extension" />
        <profile value="https://karolinskafhirserver/fhir/StructureDefinition/KarolinskaPanelName" />
      </type>
      <isModifier value="false" />
    </element>
    <element id="Procedure.extension:focus">
      <path value="Procedure.extension" />
      <sliceName value="focus" />
      <definition value="focus is used to reference the specimen in focus of the procedure" />
      <type>
        <code value="Extension" />
        <profile value="https://karolinskafhirserver/fhir/StructureDefinition/KarolinskaFocusExtension" />
      </type>
      <isModifier value="false" />
    </element>
    <element id="Procedure.identifier">
      <path value="Procedure.identifier" />
      <max value="0" />
    </element>
    <element id="Procedure.instantiatesCanonical">
      <path value="Procedure.instantiatesCanonical" />
      <max value="0" />
    </element>
    <element id="Procedure.instantiatesUri">
      <path value="Procedure.instantiatesUri" />
      <max value="0" />
    </element>
    <element id="Procedure.basedOn">
      <path value="Procedure.basedOn" />
      <max value="0" />
    </element>
    <element id="Procedure.partOf">
      <path value="Procedure.partOf" />
      <type>
        <code value="Reference" />
        <targetProfile value="http://hl7.org/fhir/StructureDefinition/Procedure" />
        <targetProfile value="https://karolinskafhirserver.org/fhir/StructureDefinition/KarolinskaGenomicStudy" />
      </type>
    </element>
    <element id="Procedure.status">
      <path value="Procedure.status" />
      <fixedCode value="completed" />
    </element>
    <element id="Procedure.statusReason">
      <path value="Procedure.statusReason" />
      <max value="0" />
    </element>
    <element id="Procedure.category.coding.system">
      <path value="Procedure.category.coding.system" />
      <min value="1" />
      <fixedUri value="http://snomed.info/sct" />
    </element>
    <element id="Procedure.category.coding.code">
      <path value="Procedure.category.coding.code" />
      <min value="1" />
      <fixedCode value="56245008" />
    </element>
    <element id="Procedure.category.coding.display">
      <path value="Procedure.category.coding.display" />
      <min value="1" />
      <fixedString value="Specimen preparation (procedure)" />
    </element>
    <element id="Procedure.subject">
      <path value="Procedure.subject" />
      <type>
        <code value="Reference" />
        <targetProfile value="https://karolinskafhirserver.org/fhir/StructureDefinition/KarolinskaPatientGenomics" />
      </type>
    </element>
    <element id="Procedure.encounter">
      <path value="Procedure.encounter" />
      <max value="0" />
    </element>
    <element id="Procedure.recorder">
      <path value="Procedure.recorder" />
      <max value="0" />
    </element>
    <element id="Procedure.asserter">
      <path value="Procedure.asserter" />
      <max value="0" />
    </element>
    <element id="Procedure.performer">
      <path value="Procedure.performer" />
      <max value="1" />
    </element>
    <element id="Procedure.performer.actor">
      <path value="Procedure.performer.actor" />
      <type>
        <code value="Reference" />
        <targetProfile value="http://hl7.org/fhir/StructureDefinition/Organization" />
      </type>
    </element>
    <element id="Procedure.performer.actor.identifier.system">
      <path value="Procedure.performer.actor.identifier.system" />
      <min value="1" />
      <fixedUri value="http://gmck.se/clarity-lims" />
    </element>
    <element id="Procedure.performer.actor.identifier.value">
      <path value="Procedure.performer.actor.identifier.value" />
      <min value="1" />
    </element>
    <element id="Procedure.performer.actor.display">
      <path value="Procedure.performer.actor.display" />
      <fixedString value="GMCK" />
    </element>
    <element id="Procedure.performer.onBehalfOf.identifier.system">
      <path value="Procedure.performer.onBehalfOf.identifier.system" />
      <min value="1" />
      <fixedUri value="http://gmck.se/clarity-lims" />
    </element>
    <element id="Procedure.performer.onBehalfOf.identifier.value">
      <path value="Procedure.performer.onBehalfOf.identifier.value" />
      <min value="1" />
    </element>
    <element id="Procedure.location">
      <path value="Procedure.location" />
      <max value="0" />
    </element>
    <element id="Procedure.reasonCode">
      <path value="Procedure.reasonCode" />
      <max value="0" />
    </element>
    <element id="Procedure.reasonReference">
      <path value="Procedure.reasonReference" />
      <max value="0" />
    </element>
    <element id="Procedure.bodySite">
      <path value="Procedure.bodySite" />
      <max value="0" />
    </element>
    <element id="Procedure.outcome">
      <path value="Procedure.outcome" />
      <max value="0" />
    </element>
    <element id="Procedure.report">
      <path value="Procedure.report" />
      <max value="0" />
    </element>
    <element id="Procedure.complication">
      <path value="Procedure.complication" />
      <max value="0" />
    </element>
    <element id="Procedure.complicationDetail">
      <path value="Procedure.complicationDetail" />
      <max value="0" />
    </element>
    <element id="Procedure.followUp">
      <path value="Procedure.followUp" />
      <max value="0" />
    </element>
    <element id="Procedure.focalDevice">
      <path value="Procedure.focalDevice" />
      <max value="0" />
    </element>
    <element id="Procedure.usedReference">
      <path value="Procedure.usedReference" />
      <max value="0" />
    </element>
    <element id="Procedure.usedCode">
      <path value="Procedure.usedCode" />
      <max value="0" />
    </element>
  </differential>
</StructureDefinition>