{
  "resourceType": "StructureDefinition",
  "id": "logicalmodel-Referencesequence-R4",
  "url": "http://linkehr.com/fhir/logicalmodel-referencesequence-R4",
  "identifier": [
    {
      "system": "openEHR-CKM",
      "value": "openEHR-EHR-CLUSTER.reference_sequence.v1"
    }
  ],
  "version": "0",
  "name": "Referencesequence",
  "title": "Reference sequence",
  "status": "draft",
  "date": "2024-06-18",
  "publisher": "openEHR",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "http://www.veratech.es"
        }
      ]
    }
  ],
  "description": "A sequence file that is used as a reference to describe genetic variants that are present in an analysed sequence.",
  "purpose": "To record details about the reference sequence used to describe variants.",
  "fhirVersion": "4.0.0",
  "mapping": [
    {
      "identity": "openEHR",
      "uri": "http://openehr.org",
      "name": "openEHR Mapping"
    },
    {
      "identity": "openEHR-natural",
      "uri": "http://openehr.org",
      "name": "openEHR natural path"
    }
  ],
  "kind": "logical",
  "abstract": false,
  "type": "StructureDefinition",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Element",
  "snapshot": {
    "element": [
      {
        "id": "Reference_sequence",
        "path": "Reference_sequence",
        "short": "Reference sequence",
        "definition": "A sequence file that is used as a reference to describe genetic variants that are present in an analysed sequence.",
        "min": 1,
        "max": "*",
        "base": {
          "path": "Reference_sequence",
          "min": 1,
          "max": "*"
        },
        "type": [
          {
            "code": "BackboneElement"
          }
        ],
        "mustSupport": true,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Reference_genome_assembly",
        "path": "Reference_sequence.Reference_genome_assembly",
        "short": "Reference genome assembly",
        "definition": "The reference genome assembled as a representative model of the human genome.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Reference_genome_assembly",
          "min": 0,
          "max": "1"
        }
      },
      {
        "id": "Reference_sequence.Reference_genome_assembly.value",
        "path": "Reference_sequence.Reference_genome_assembly.value",
        "short": "Reference genome assembly",
        "definition": "The reference genome assembled as a representative model of the human genome.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Reference_genome_assembly.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Source_name",
        "path": "Reference_sequence.Source_name",
        "short": "Source name",
        "definition": "The name of the data source containing the reference sequence.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Source_name",
          "min": 0,
          "max": "1"
        }
      },
      {
        "id": "Reference_sequence.Source_name.value",
        "path": "Reference_sequence.Source_name.value",
        "short": "Source name",
        "definition": "The name of the data source containing the reference sequence.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Source_name.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Accession_number",
        "path": "Reference_sequence.Accession_number",
        "short": "Accession number",
        "definition": "A unique identifier to refer to a sequence record in a sequence repository.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Accession_number",
          "min": 0,
          "max": "1"
        }
      },
      {
        "id": "Reference_sequence.Accession_number.value",
        "path": "Reference_sequence.Accession_number.value",
        "short": "Accession number",
        "definition": "A unique identifier to refer to a sequence record in a sequence repository.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Accession_number.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Version_number",
        "path": "Reference_sequence.Version_number",
        "short": "Version number",
        "definition": "The version number of the data record of the reference sequence.",
        "min": 0,
        "max": "*",
        "base": {
          "path": "Reference_sequence.Version_number",
          "min": 0,
          "max": "*"
        }
      },
      {
        "id": "Reference_sequence.Version_number.value",
        "path": "Reference_sequence.Version_number.value",
        "short": "Version number",
        "definition": "The version number of the data record of the reference sequence.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Version_number.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.URL",
        "path": "Reference_sequence.URL",
        "short": "URL",
        "definition": "Network address.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.URL",
          "min": 0,
          "max": "1"
        }
      },
      {
        "id": "Reference_sequence.URL.value",
        "path": "Reference_sequence.URL.value",
        "short": "URL",
        "definition": "Network address.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.URL.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "string"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Chromosome_label",
        "path": "Reference_sequence.Chromosome_label",
        "short": "Chromosome label",
        "definition": "Chromosome identifier.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Chromosome_label",
          "min": 0,
          "max": "1"
        }
      },
      {
        "id": "Reference_sequence.Chromosome_label.value_DV_CODED_TEXT",
        "path": "Reference_sequence.Chromosome_label.value_DV_CODED_TEXT",
        "short": "Chromosome label",
        "definition": "Chromosome identifier.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Chromosome_label.value_DV_CODED_TEXT",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Reference_sequence.Chromosome_label.value_DV_TEXT",
        "path": "Reference_sequence.Chromosome_label.value_DV_TEXT",
        "short": "Chromosome label",
        "definition": "Chromosome identifier.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Reference_sequence.Chromosome_label.value_DV_TEXT",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "CodeableConcept"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      }
    ]
  }
}