{
  "resourceType": "StructureDefinition",
  "id": "logicalmodel-Genomicconversionvariant-R4",
  "url": "http://linkehr.com/fhir/logicalmodel-genomicconversionvariant-R4",
  "identifier": [
    {
      "system": "openEHR-CKM",
      "value": "openEHR-EHR-CLUSTER.genomic_conversion_variant.v1"
    }
  ],
  "version": "0",
  "name": "Genomicconversionvariant",
  "title": "Genomic conversion variant",
  "status": "draft",
  "date": "2024-06-18",
  "publisher": "openEHR",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "http://www.veratech.es"
        }
      ]
    }
  ],
  "description": "A human genetic sequence change where, compared to a genomic reference sequence, a range of nucleotides are replaced by a sequence from elsewhere in the genome.",
  "purpose": "To record the details about a conversion variant of human DNA, observed in a genomic sequence.",
  "fhirVersion": "4.0.0",
  "mapping": [
    {
      "identity": "openEHR",
      "uri": "http://openehr.org",
      "name": "openEHR Mapping"
    },
    {
      "identity": "openEHR-natural",
      "uri": "http://openehr.org",
      "name": "openEHR natural path"
    }
  ],
  "kind": "logical",
  "abstract": false,
  "type": "StructureDefinition",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Element",
  "snapshot": {
    "element": [
      {
        "id": "Genomic_conversion_variant",
        "path": "Genomic_conversion_variant",
        "short": "Genomic conversion variant",
        "definition": "A human genetic sequence change where, compared to a genomic reference sequence, a range of nucleotides are replaced by a sequence from elsewhere in the genome.",
        "min": 1,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant",
          "min": 1,
          "max": "1"
        },
        "type": [
          {
            "code": "BackboneElement"
          }
        ],
        "mustSupport": true,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.Start_converted_position",
        "path": "Genomic_conversion_variant.Start_converted_position",
        "short": "Start converted position",
        "definition": "The position of the first nucleotide of the converted range.",
        "min": 1,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Start_converted_position",
          "min": 1,
          "max": "1"
        }
      },
      {
        "id": "Genomic_conversion_variant.Start_converted_position.value",
        "path": "Genomic_conversion_variant.Start_converted_position.value",
        "short": "Start converted position",
        "definition": "The position of the first nucleotide of the converted range.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Start_converted_position.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "Quantity"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.End_converted_position",
        "path": "Genomic_conversion_variant.End_converted_position",
        "short": "End converted position",
        "definition": "The position of the last nucleotide of the converted range.",
        "min": 1,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.End_converted_position",
          "min": 1,
          "max": "1"
        }
      },
      {
        "id": "Genomic_conversion_variant.End_converted_position.value",
        "path": "Genomic_conversion_variant.End_converted_position.value",
        "short": "End converted position",
        "definition": "The position of the last nucleotide of the converted range.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.End_converted_position.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "Quantity"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.Replacing_sequence_start_position",
        "path": "Genomic_conversion_variant.Replacing_sequence_start_position",
        "short": "Replacing sequence start position",
        "definition": "The position of the first nucleotide of the replacing sequence.",
        "min": 1,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Replacing_sequence_start_position",
          "min": 1,
          "max": "1"
        }
      },
      {
        "id": "Genomic_conversion_variant.Replacing_sequence_start_position.value",
        "path": "Genomic_conversion_variant.Replacing_sequence_start_position.value",
        "short": "Replacing sequence start position",
        "definition": "The position of the first nucleotide of the replacing sequence.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Replacing_sequence_start_position.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "Quantity"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.Replacing_sequence_end_position",
        "path": "Genomic_conversion_variant.Replacing_sequence_end_position",
        "short": "Replacing sequence end position",
        "definition": "The position of the last nucleotide of the replacing sequence.",
        "min": 1,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Replacing_sequence_end_position",
          "min": 1,
          "max": "1"
        }
      },
      {
        "id": "Genomic_conversion_variant.Replacing_sequence_end_position.value",
        "path": "Genomic_conversion_variant.Replacing_sequence_end_position.value",
        "short": "Replacing sequence end position",
        "definition": "The position of the last nucleotide of the replacing sequence.",
        "min": 0,
        "max": "1",
        "base": {
          "path": "Genomic_conversion_variant.Replacing_sequence_end_position.value",
          "min": 0,
          "max": "1"
        },
        "type": [
          {
            "code": "Quantity"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.Converted_reference_sequence",
        "path": "Genomic_conversion_variant.Converted_reference_sequence",
        "short": "Converted reference sequence",
        "definition": "The sequence file used as a reference to describe the converted region.",
        "min": 0,
        "max": "*",
        "base": {
          "path": "Genomic_conversion_variant.Converted_reference_sequence",
          "min": 0,
          "max": "*"
        },
        "type": [
          {
            "code": "BackboneElement"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      },
      {
        "id": "Genomic_conversion_variant.Replacing_reference_sequence",
        "path": "Genomic_conversion_variant.Replacing_reference_sequence",
        "short": "Replacing reference sequence",
        "definition": "The sequence file used as a reference to describe the replacing region.",
        "min": 0,
        "max": "*",
        "base": {
          "path": "Genomic_conversion_variant.Replacing_reference_sequence",
          "min": 0,
          "max": "*"
        },
        "type": [
          {
            "code": "BackboneElement"
          }
        ],
        "mustSupport": false,
        "isModifier": false,
        "isSummary": true
      }
    ]
  }
}