{ "resourceType": "StructureDefinition", "id": "biobankcy-sd-donor", "meta": { "versionId": "1", "lastUpdated": "2022-12-12T14:34:48.0818891+00:00" }, "url": "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-sd-donor", "name": "BIOBANKCYSDDonor", "title": "Profile: Donor (biobank.cy)", "status": "draft", "date": "2022-03-24T10:46:38.3751258+00:00", "publisher": "biobank.cy", "contact": [ { "name": "Molecular Medicine Research Center (MMRC)", "telecom": [ { "system": "email", "value": "biobank@ucy.ac.cy", "use": "work" } ] } ], "description": "The pseudo-anonymized participants joining the biobank.cy data warehouse through particular research projects. Every BIOBANKCYSDDonor corresponds to exactly one BIOBANKCYSDResearchSubject and exactly one BIOBANKCYSDCitizen.", "fhirVersion": "4.0.1", "kind": "resource", "abstract": false, "type": "Patient", "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Patient", "derivation": "constraint", "differential": { "element": [ { "id": "Patient", "path": "Patient", "short": "Information about an individual", "definition": "Demographics and other administrative information about an receiving research or diagnostic services in biobank.cy", "mustSupport": true }, { "id": "Patient.extension", "path": "Patient.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:growupPlace", "path": "Patient.extension", "sliceName": "growupPlace", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-growupplace" ] } ], "isModifier": false }, { "id": "Patient.extension:growupPlace.value[x]", "path": "Patient.extension.value[x]", "min": 1 }, { "id": "Patient.extension:sistersNumber", "path": "Patient.extension", "sliceName": "sistersNumber", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-siblingsnumber" ] } ], "isModifier": false }, { "id": "Patient.extension:sistersNumber.extension", "path": "Patient.extension.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship", "path": "Patient.extension.extension", "sliceName": "siblingRelationship", "min": 0 }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1, "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "patternCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code": "SIS", "display": "sister" } ] }, "binding": { "strength": "extensible", "valueSet": "http://hl7.org/fhir/ValueSet/sibling-relationship-codes" } }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship.value[x].coding", "path": "Patient.extension.extension.value[x].coding", "min": 1, "max": "1" }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship.value[x].coding.system", "path": "Patient.extension.extension.value[x].coding.system", "min": 1 }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship.value[x].coding.code", "path": "Patient.extension.extension.value[x].coding.code", "min": 1 }, { "id": "Patient.extension:sistersNumber.extension:siblingRelationship.value[x].coding.display", "path": "Patient.extension.extension.value[x].coding.display", "min": 1 }, { "id": "Patient.extension:sistersNumber.extension:siblingsNumber", "path": "Patient.extension.extension", "sliceName": "siblingsNumber", "min": 0 }, { "id": "Patient.extension:sistersNumber.extension:siblingsNumber.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1 }, { "id": "Patient.extension:brothersNumber", "path": "Patient.extension", "sliceName": "brothersNumber", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-siblingsnumber" ] } ], "isModifier": false }, { "id": "Patient.extension:brothersNumber.extension", "path": "Patient.extension.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship", "path": "Patient.extension.extension", "sliceName": "siblingRelationship", "min": 0 }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1, "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "patternCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code": "BRO", "display": "brother" } ] }, "binding": { "strength": "extensible", "valueSet": "http://hl7.org/fhir/ValueSet/sibling-relationship-codes" } }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship.value[x].coding", "path": "Patient.extension.extension.value[x].coding", "min": 1, "max": "1" }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship.value[x].coding.system", "path": "Patient.extension.extension.value[x].coding.system", "min": 1 }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship.value[x].coding.code", "path": "Patient.extension.extension.value[x].coding.code", "min": 1 }, { "id": "Patient.extension:brothersNumber.extension:siblingRelationship.value[x].coding.display", "path": "Patient.extension.extension.value[x].coding.display", "min": 1 }, { "id": "Patient.extension:brothersNumber.extension:siblingsNumber", "path": "Patient.extension.extension", "sliceName": "siblingsNumber", "min": 0 }, { "id": "Patient.extension:brothersNumber.extension:siblingsNumber.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1 }, { "id": "Patient.extension:educationalLevel", "path": "Patient.extension", "sliceName": "educationalLevel", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-educationlevel" ] } ], "isModifier": false }, { "id": "Patient.extension:educationalLevel.value[x]", "path": "Patient.extension.value[x]", "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "binding": { "strength": "required" } }, { "id": "Patient.extension:educationalLevel.value[x].coding.system", "path": "Patient.extension.value[x].coding.system", "min": 1 }, { "id": "Patient.extension:educationalLevel.value[x].coding.code", "path": "Patient.extension.value[x].coding.code", "min": 1 }, { "id": "Patient.extension:educationalLevel.value[x].coding.display", "path": "Patient.extension.value[x].coding.display", "min": 1 }, { "id": "Patient.extension:motherPlaceOfOrigin", "path": "Patient.extension", "sliceName": "motherPlaceOfOrigin", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-relativepersonplaceoforigin" ] } ], "isModifier": false }, { "id": "Patient.extension:motherPlaceOfOrigin.extension", "path": "Patient.extension.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship", "path": "Patient.extension.extension", "sliceName": "relativeRelationship", "min": 0 }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1, "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "patternCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code": "MTH", "display": "mother" } ] }, "binding": { "strength": "required", "valueSet": "http://ig.ehealth4u.eu/fhir/ValueSet/cyehr-vs-ehdsipersonalrelationship" } }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship.value[x].coding", "path": "Patient.extension.extension.value[x].coding", "min": 1, "max": "1" }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.system", "path": "Patient.extension.extension.value[x].coding.system", "min": 1 }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.code", "path": "Patient.extension.extension.value[x].coding.code", "min": 1 }, { "id": "Patient.extension:motherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.display", "path": "Patient.extension.extension.value[x].coding.display", "min": 1 }, { "id": "Patient.extension:fatherPlaceOfOrigin", "path": "Patient.extension", "sliceName": "fatherPlaceOfOrigin", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-relativepersonplaceoforigin" ] } ], "isModifier": false }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension", "path": "Patient.extension.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship", "path": "Patient.extension.extension", "sliceName": "relativeRelationship", "min": 0 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1, "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "patternCodeableConcept": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode", "code": "FTH", "display": "father" } ] } }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship.value[x].coding", "path": "Patient.extension.extension.value[x].coding", "min": 1, "max": "1" }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.system", "path": "Patient.extension.extension.value[x].coding.system", "min": 1 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.code", "path": "Patient.extension.extension.value[x].coding.code", "min": 1 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:relativeRelationship.value[x].coding.display", "path": "Patient.extension.extension.value[x].coding.display", "min": 1 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:placeOfOrigin", "path": "Patient.extension.extension", "sliceName": "placeOfOrigin", "min": 0 }, { "id": "Patient.extension:fatherPlaceOfOrigin.extension:placeOfOrigin.value[x]", "path": "Patient.extension.extension.value[x]", "min": 1 }, { "id": "Patient.extension:citizenship", "path": "Patient.extension", "sliceName": "citizenship", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://hl7.org/fhir/StructureDefinition/patient-citizenship" ] } ], "isModifier": false }, { "id": "Patient.extension:citizenship.extension", "path": "Patient.extension.extension", "slicing": { "discriminator": [ { "type": "value", "path": "url" } ], "rules": "open" }, "min": 0 }, { "id": "Patient.extension:citizenship.extension:code", "path": "Patient.extension.extension", "sliceName": "code", "min": 0 }, { "id": "Patient.extension:citizenship.extension:code.value[x]", "path": "Patient.extension.extension.value[x]", "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "binding": { "strength": "required", "valueSet": "http://hl7.org/fhir/ValueSet/iso3166-1-2" } }, { "id": "Patient.extension:race", "path": "Patient.extension", "sliceName": "race", "min": 0, "max": "1", "type": [ { "code": "Extension", "profile": [ "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-ext-race" ] } ], "isModifier": false }, { "id": "Patient.extension:race.value[x]", "path": "Patient.extension.value[x]", "comment": "When the concept \"Other Race\" is used, the user shall specify exactly what race using the text element.", "requirements": "Corresponds to the ethnicity_fylh in REDCap.", "min": 1, "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "binding": { "strength": "required", "valueSet": "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-vs-race" } }, { "id": "Patient.identifier", "path": "Patient.identifier", "slicing": { "discriminator": [ { "type": "pattern", "path": "$this" } ], "rules": "open" }, "definition": "Identifiers can be provided for every person registered in the biobank. There are three possible identifiers that can be used: (1) the national identity and the issuing country (2) the passport and the issuing country (3) the Alien Resident Card (in Cyprus) \n\nAdditionally, there are internal identifiers for the biobank.cy which are (1) MPI (Master Patient Index) which identifies the citizens accross all the research projects internally in the biobank.cy", "requirements": "People are known by a variety of ids. Some institutions maintain several, and most collect identifiers for exchange with other organizations concerning the person. Examples are national person identifier and local identifier.", "min": 1, "mustSupport": true }, { "id": "Patient.identifier.value", "path": "Patient.identifier.value", "min": 1 }, { "id": "Patient.identifier:biobankUCY", "path": "Patient.identifier", "sliceName": "biobankUCY", "min": 1, "max": "1", "patternIdentifier": { "type": { "coding": [ { "system": "http://terminology.hl7.org/CodeSystem/v2-0203", "code": "DR" } ] } } }, { "id": "Patient.identifier:biobankUCY.use", "path": "Patient.identifier.use", "min": 1 }, { "id": "Patient.identifier:biobankUCY.type", "path": "Patient.identifier.type", "min": 1 }, { "id": "Patient.identifier:biobankUCY.system", "path": "Patient.identifier.system", "max": "0" }, { "id": "Patient.identifier:biobankUCY.value", "path": "Patient.identifier.value", "min": 1 }, { "id": "Patient.identifier:biobankUCY.period", "path": "Patient.identifier.period", "max": "0" }, { "id": "Patient.active", "path": "Patient.active", "max": "0" }, { "id": "Patient.name", "path": "Patient.name", "max": "0", "constraint": [ { "key": "ips-pat-1", "severity": "error", "human": "Patient.name.given or Patient.name.family or both SHALL be present", "expression": "family.exists() or given.exists()", "xpath": "f:given or f:family", "source": "http://hl7.org/fhir/uv/ips/StructureDefinition/Patient-uv-ips" } ] }, { "id": "Patient.telecom", "path": "Patient.telecom", "max": "0" }, { "id": "Patient.gender", "path": "Patient.gender", "comment": "Create conceptMap for http://ig.biobank.cy/fhir/ValueSet/biobankcy-vs-ehdsiadministrativegender", "mustSupport": true }, { "id": "Patient.birthDate", "path": "Patient.birthDate", "mustSupport": true }, { "id": "Patient.deceased[x]", "path": "Patient.deceased[x]", "type": [ { "code": "dateTime" } ], "mustSupport": true }, { "id": "Patient.address", "path": "Patient.address", "short": "One or more addresses for the person.", "definition": "One or more addresses for the person.", "comment": "Follow the structure of the prototype of the national EHR address datatype.", "max": "0", "type": [ { "code": "Address", "profile": [ "http://ig.ehealth4u.eu/fhir/StructureDefinition/cyehr-sd-address" ] } ], "constraint": [ { "key": "pat-cnt-2or3-char", "severity": "warning", "human": "The content of the country element (if present) SHALL be selected EITHER from ValueSet ISO Country Alpha-2 http://hl7.org/fhir/ValueSet/iso3166-1-2 OR MAY be selected from ISO Country Alpha-3 Value Set http://hl7.org/fhir/ValueSet/iso3166-1-3, IF the country is not specified in value Set ISO Country Alpha-2 http://hl7.org/fhir/ValueSet/iso3166-1-2.", "expression": "country.empty() or (country.memberOf('http://hl7.org/fhir/ValueSet/iso3166-1-2') or country.memberOf('http://hl7.org/fhir/ValueSet/iso3166-1-3'))", "source": "http://hl7.org/fhir/uv/ips/StructureDefinition/Patient-uv-ips" } ] }, { "id": "Patient.maritalStatus", "path": "Patient.maritalStatus", "max": "0", "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ] }, { "id": "Patient.multipleBirth[x]", "path": "Patient.multipleBirth[x]", "comment": "Not to be used for biobank.cy" }, { "id": "Patient.photo", "path": "Patient.photo", "max": "0" }, { "id": "Patient.contact", "path": "Patient.contact", "max": "0" }, { "id": "Patient.contact.relationship", "path": "Patient.contact.relationship", "binding": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName", "valueString": "ContactRelationship" } ], "strength": "required", "description": "The nature of the relationship between a patient and a contact person for that patient as defined by eHDSI in MVC", "valueSet": "http://ig.ehealth4u.eu/fhir/ValueSet/cyehr-vs-ehdsiroleclass" } }, { "id": "Patient.contact.name.use", "path": "Patient.contact.name.use", "mustSupport": true }, { "id": "Patient.contact.name.family", "path": "Patient.contact.name.family", "mustSupport": true }, { "id": "Patient.contact.name.given", "path": "Patient.contact.name.given", "mustSupport": true }, { "id": "Patient.contact.telecom.system", "path": "Patient.contact.telecom.system", "mustSupport": true }, { "id": "Patient.contact.telecom.value", "path": "Patient.contact.telecom.value", "min": 1, "mustSupport": true }, { "id": "Patient.contact.telecom.use", "path": "Patient.contact.telecom.use", "mustSupport": true }, { "id": "Patient.contact.address", "path": "Patient.contact.address", "type": [ { "code": "Address", "profile": [ "http://hl7.org/fhir/StructureDefinition/Address", "http://ig.ehealth4u.eu/fhir/StructureDefinition/cyehr-sd-address" ] } ] }, { "id": "Patient.contact.gender", "path": "Patient.contact.gender", "short": "Female | Male | Undifferentiated" }, { "id": "Patient.contact.organization.reference", "path": "Patient.contact.organization.reference", "min": 1 }, { "id": "Patient.communication", "path": "Patient.communication", "max": "0" }, { "id": "Patient.communication.language", "path": "Patient.communication.language", "type": [ { "code": "CodeableConcept", "profile": [ "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips" ] } ], "binding": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-maxValueSet", "valueCanonical": "http://hl7.org/fhir/ValueSet/all-languages" }, { "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName", "valueString": "Language" }, { "url": "http://hl7.org/fhir/StructureDefinition/elementdefinition-isCommonBinding", "valueBoolean": true } ], "strength": "required", "valueSet": "http://ig.biobank.cy/fhir/ValueSet/biobankcy-vs-ehdsilanguage" } }, { "id": "Patient.communication.language.coding", "path": "Patient.communication.language.coding", "min": 1 }, { "id": "Patient.generalPractitioner", "path": "Patient.generalPractitioner", "max": "0" }, { "id": "Patient.managingOrganization", "path": "Patient.managingOrganization", "comment": "All the Patients of the biobank.cy shall hve the biobank.cy instance as managingOrganization." }, { "id": "Patient.managingOrganization.reference", "path": "Patient.managingOrganization.reference", "comment": "Reference to biobank.cy organization.", "min": 1 }, { "id": "Patient.link.other", "path": "Patient.link.other", "type": [ { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-hierarchy", "valueBoolean": false } ], "code": "Reference", "targetProfile": [ "http://hl7.org/fhir/StructureDefinition/Patient", "http://hl7.org/fhir/StructureDefinition/RelatedPerson", "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-sd-citizen" ] } ] }, { "id": "Patient.link.other.reference", "path": "Patient.link.other.reference", "min": 1 }, { "id": "Patient.link.type", "path": "Patient.link.type", "fixedCode": "refer" } ] } }