{
  "resourceType": "StructureDefinition",
  "id": "biobankcy-sd-collection",
  "url": "http://ig.biobank.cy/fhir/StructureDefinition/biobankcy-sd-collection",
  "name": "BIOBANKCYSDCollection",
  "title": "Profile: Collection (biobank.cy)",
  "status": "draft",
  "publisher": "biobank.cy",
  "contact": [
    {
      "name": "Molecular Medicine Research Center (MMRC)",
      "telecom": [
        {
          "system": "email",
          "value": "biobank@ucy.ac.cy",
          "use": "work"
        }
      ]
    }
  ],
  "description": "This profile represents the information of a collection of biological specimens used by the biobank. biobank.cy collections are organized per research subject/research project.",
  "fhirVersion": "4.0.1",
  "kind": "resource",
  "abstract": false,
  "type": "Organization",
  "baseDefinition": "http://hl7.org/fhir/StructureDefinition/Organization",
  "derivation": "constraint",
  "differential": {
    "element": [
      {
        "id": "Organization.extension",
        "path": "Organization.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        },
        "min": 3
      },
      {
        "id": "Organization.extension:OrganizationDescription",
        "path": "Organization.extension",
        "sliceName": "OrganizationDescription",
        "min": 1,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://fhir.bbmri.de/StructureDefinition/OrganizationDescription"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "Organization.extension:CollectionType",
        "path": "Organization.extension",
        "sliceName": "CollectionType",
        "min": 1,
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://fhir.bbmri.de/StructureDefinition/CollectionType"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "Organization.extension:DataCategory",
        "path": "Organization.extension",
        "sliceName": "DataCategory",
        "comment": "biobank.cy: for biobank.cy collections use the following:\r\nBIOLOGICAL_SAMPLES\r\nGENEALOGICAL_RECORDS\r\nMEDICAL_RECORDS\r\nSURVEY_DATA",
        "min": 1,
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://fhir.bbmri.de/StructureDefinition/DataCategory"
            ]
          }
        ],
        "mustSupport": true,
        "isModifier": false
      },
      {
        "id": "Organization.identifier",
        "path": "Organization.identifier",
        "slicing": {
          "discriminator": [
            {
              "type": "pattern",
              "path": "$this"
            }
          ],
          "rules": "open"
        },
        "min": 1
      },
      {
        "id": "Organization.identifier:Bbmri-EricId",
        "path": "Organization.identifier",
        "sliceName": "Bbmri-EricId",
        "max": "1",
        "patternIdentifier": {
          "system": "http://www.bbmri-eric.eu/"
        },
        "mustSupport": true
      },
      {
        "id": "Organization.identifier:Bbmri-EricId.system",
        "path": "Organization.identifier.system",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.identifier:Bbmri-EricId.value",
        "path": "Organization.identifier.value",
        "comment": "biobank.cy: for collections of its own the id shall be \"bbmri-eric:ID:CY_cybiobank:collection:[project_id]\".",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.type",
        "path": "Organization.type",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips"
            ]
          }
        ]
      },
      {
        "id": "Organization.name",
        "path": "Organization.name",
        "comment": "biobank.cy: For example \"General Protocol\".",
        "mustSupport": true
      },
      {
        "id": "Organization.telecom",
        "path": "Organization.telecom",
        "comment": "Not to be used for biobank.cy."
      },
      {
        "id": "Organization.address",
        "path": "Organization.address",
        "comment": "Not to be used for biobank.cy."
      },
      {
        "id": "Organization.partOf",
        "path": "Organization.partOf",
        "comment": "for biobank.cy collections reference to Organization/biobank.cy",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact",
        "path": "Organization.contact",
        "slicing": {
          "discriminator": [
            {
              "type": "pattern",
              "path": "purpose"
            }
          ],
          "rules": "open"
        }
      },
      {
        "id": "Organization.contact.purpose",
        "path": "Organization.contact.purpose",
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips"
            ]
          }
        ]
      },
      {
        "id": "Organization.contact:head",
        "path": "Organization.contact",
        "sliceName": "head",
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:head.extension",
        "path": "Organization.contact.extension",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "url"
            }
          ],
          "rules": "open"
        },
        "min": 0
      },
      {
        "id": "Organization.contact:head.extension:ContactRole",
        "path": "Organization.contact.extension",
        "sliceName": "ContactRole",
        "comment": "biobank.cy: Use Principle Investigator",
        "min": 0,
        "max": "1",
        "type": [
          {
            "code": "Extension",
            "profile": [
              "https://fhir.bbmri.de/StructureDefinition/ContactRole"
            ]
          }
        ],
        "isModifier": false
      },
      {
        "id": "Organization.contact:head.purpose",
        "path": "Organization.contact.purpose",
        "min": 1,
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips"
            ]
          }
        ],
        "patternCodeableConcept": {
          "coding": [
            {
              "system": "http://terminology.hl7.org/CodeSystem/contactentity-type",
              "code": "ADMIN"
            }
          ]
        },
        "mustSupport": true
      },
      {
        "id": "Organization.contact:head.name",
        "path": "Organization.contact.name",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact:head.name.family",
        "path": "Organization.contact.name.family",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact:head.name.given",
        "path": "Organization.contact.name.given",
        "min": 1,
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact",
        "path": "Organization.contact",
        "sliceName": "contact",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.purpose",
        "path": "Organization.contact.purpose",
        "min": 1,
        "type": [
          {
            "code": "CodeableConcept",
            "profile": [
              "http://hl7.org/fhir/uv/ips/StructureDefinition/CodeableConcept-uv-ips"
            ]
          }
        ],
        "patternCodeableConcept": {
          "coding": [
            {
              "system": "https://fhir.bbmri.de/CodeSystem/ContactType",
              "code": "RESEARCH"
            }
          ]
        },
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.purpose.coding",
        "path": "Organization.contact.purpose.coding",
        "min": 1
      },
      {
        "id": "Organization.contact:contact.purpose.coding.system",
        "path": "Organization.contact.purpose.coding.system",
        "min": 1
      },
      {
        "id": "Organization.contact:contact.purpose.coding.code",
        "path": "Organization.contact.purpose.coding.code",
        "min": 1
      },
      {
        "id": "Organization.contact:contact.name",
        "path": "Organization.contact.name",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.name.family",
        "path": "Organization.contact.name.family",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.name.given",
        "path": "Organization.contact.name.given",
        "max": "1",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.telecom",
        "path": "Organization.contact.telecom",
        "slicing": {
          "discriminator": [
            {
              "type": "value",
              "path": "system"
            }
          ],
          "rules": "open"
        },
        "min": 1
      },
      {
        "id": "Organization.contact:contact.telecom.system",
        "path": "Organization.contact.telecom.system",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.telecom.value",
        "path": "Organization.contact.telecom.value",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.telecom:email",
        "path": "Organization.contact.telecom",
        "sliceName": "email",
        "min": 1,
        "max": "1"
      },
      {
        "id": "Organization.contact:contact.telecom:email.system",
        "path": "Organization.contact.telecom.system",
        "min": 1,
        "fixedCode": "email",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.telecom:email.value",
        "path": "Organization.contact.telecom.value",
        "min": 1,
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.address.line",
        "path": "Organization.contact.address.line",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.address.city",
        "path": "Organization.contact.address.city",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.address.postalCode",
        "path": "Organization.contact.address.postalCode",
        "mustSupport": true
      },
      {
        "id": "Organization.contact:contact.address.country",
        "path": "Organization.contact.address.country",
        "min": 1,
        "mustSupport": true,
        "binding": {
          "strength": "required",
          "valueSet": "http://ig.ehealth4u.eu/fhir/ValueSet/cyehr-vs-ehdsicountry"
        }
      },
      {
        "id": "Organization.endpoint",
        "path": "Organization.endpoint",
        "comment": "Not to be used for biobank.cy."
      }
    ]
  }
}